BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479548
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitinatio... 383 6e-106
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 211 3e-54
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 89.8 1e-17
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 71.3 5e-12
> AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitination
effector family protein | chr3:7114403-7114714 FORWARD LENGTH=312
Length=312
Score = 383 bits (207), Expect = 6e-106
Identities = 285/321 (89%), Gaps = 12/321 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60
Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 119
||||||||||||||||||| | ||||| ||||| | |||||||||||||||| |||
Sbjct 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119
Query 120 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAAT-AAAGGCAAAG 178
| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAG-CAAAG 178
Query 179 ACATGATGGGGATGCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTAAAGAAG 238
||| || | | | ||| ||||||||||||| ||| |||||||||| || |||||||
Sbjct 179 ACAGGAAGC--A--C--AACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAG 232
Query 239 TGGATTTTGGAGAA-TCTCGAAACAGAAATCTCGAACCACTTGTGTGCTCTTATGTTCCA 297
||||| |||||||| | |||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 233 TGGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCA 291
Query 298 AGTTCAATGCAACTTGAATAG 318
|||||||||||||||||||||
Sbjct 292 AGTTCAATGCAACTTGAATAG 312
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 211 bits (114), Expect = 3e-54
Identities = 138/150 (92%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 670 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCAAGTTC 729
Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGGT 120
|||||||||||||||||||||| ||||||||| | | ||||||||||||||||| |
Sbjct 730 TTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTAGTGAT 789
Query 121 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 150
||||||||||||||||||||||||||||||
Sbjct 790 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 819
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 89.8 bits (48), Expect = 1e-17
Identities = 80/94 (85%), Gaps = 8/94 (9%)
Strand=Plus/Plus
Query 220 GATGGAT-CTTTTAAAGAAGTGGATTTTGGAGAATCT-CGAAACAGAAATCTCG--AACC 275
||||||| | |||||| |||||||| ||||||||||| | |||| |||| | | | ||
Sbjct 1072 GATGGATAC-TTTAAACAAGTGGATCTTGGAGAATCTAC-AAAC--AAATATTGTTACCC 1127
Query 276 ACTTGTGTGCTCTTATGTTCCAAGTTCAATGCAA 309
|||||||||||||||||||||||||||| |||||
Sbjct 1128 ACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 71.3 bits (38), Expect = 5e-12
Identities = 230/319 (72%), Gaps = 28/319 (9%)
Strand=Plus/Plus
Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60
||| |||||||||| ||||| || ||||||||||| || ||| |||| ||||||| |
Sbjct 829 ATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTG 888
Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTT-ATGTTTTC--GTTTAGT 117
|||||| | ||||||||| | |||| | || |||| | | |||| | ||||
Sbjct 889 TTCTTAGCTGTGGATATG-CA---CTCA-C-TTAA---GTTTCA-G-TTTCAAG-TTAGA 936
Query 118 GGTGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAATAAAGGCAAA 177
| | | |||||||| || || |||||||||| | | | ||| |||||| ||||| | |||
Sbjct 937 GCTTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAA-G-AAA 994
Query 178 GACATGA--T-G-GGGAT-GCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTA 232
|| | | | | | | || ||| ||||| |||| | |||| ||||||| | |
Sbjct 995 AACGTTATTTAGCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGGG 1054
Query 233 AAGAAGTGGATTTTGGAGAATCTC-G-AAACAGAA-ATCTCGAACCACTTGTGTGCTCTT 289
|| ||||||| || | |||| || | | ||| || | | | ||||||||||||||||
Sbjct 1055 AACAAGTGGACCTT-G-GAATGTCTGTAGACA-AATTTGTTTACCCACTTGTGTGCTCTT 1111
Query 290 ATGTTCCAAGTTCAATGCA 308
|||||||||||| | ||||
Sbjct 1112 ATGTTCCAAGTTTAGTGCA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14778718206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5