BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479548 Length=318 Score E Sequences producing significant alignments: (Bits) Value AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitinatio... 383 6e-106 AT3G23420.1 | Symbols: | F-box and associated interaction doma... 211 3e-54 AT5G36200.1 | Symbols: | F-box and associated interaction doma... 89.8 1e-17 AT3G24580.1 | Symbols: | F-box and associated interaction doma... 71.3 5e-12 > AT3G20400.1 | Symbols: EMB2743 | F-box associated ubiquitination effector family protein | chr3:7114403-7114714 FORWARD LENGTH=312 Length=312 Score = 383 bits (207), Expect = 6e-106 Identities = 285/321 (89%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTC 60 Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGG- 119 ||||||||||||||||||| | ||||| ||||| | |||||||||||||||| ||| Sbjct 61 TTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTA-TGGC 119 Query 120 TGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAAT-AAAGGCAAAG 178 | ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| Sbjct 120 TACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAG-CAAAG 178 Query 179 ACATGATGGGGATGCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTAAAGAAG 238 ||| || | | | ||| ||||||||||||| ||| |||||||||| || ||||||| Sbjct 179 ACAGGAAGC--A--C--AACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAG 232 Query 239 TGGATTTTGGAGAA-TCTCGAAACAGAAATCTCGAACCACTTGTGTGCTCTTATGTTCCA 297 ||||| |||||||| | |||||||||| ||||| |||||||||||| ||||||||||||| Sbjct 233 TGGATCTTGGAGAAGT-TCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCA 291 Query 298 AGTTCAATGCAACTTGAATAG 318 ||||||||||||||||||||| Sbjct 292 AGTTCAATGCAACTTGAATAG 312 > AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8386273-8387324 REVERSE LENGTH=858 Length=858 Score = 211 bits (114), Expect = 3e-54 Identities = 138/150 (92%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60 ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| Sbjct 670 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCAAGTTC 729 Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTTATGTTTTCGTTTAGTGGT 120 |||||||||||||||||||||| ||||||||| | | ||||||||||||||||| | Sbjct 730 TTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTAGTGAT 789 Query 121 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 150 |||||||||||||||||||||||||||||| Sbjct 790 GCAAGTTTCTTCATTGATGAGGAGAAGAAA 819 > AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14244106-14246296 REVERSE LENGTH=1416 Length=1416 Score = 89.8 bits (48), Expect = 1e-17 Identities = 80/94 (85%), Gaps = 8/94 (9%) Strand=Plus/Plus Query 220 GATGGAT-CTTTTAAAGAAGTGGATTTTGGAGAATCT-CGAAACAGAAATCTCG--AACC 275 ||||||| | |||||| |||||||| ||||||||||| | |||| |||| | | | || Sbjct 1072 GATGGATAC-TTTAAACAAGTGGATCTTGGAGAATCTAC-AAAC--AAATATTGTTACCC 1127 Query 276 ACTTGTGTGCTCTTATGTTCCAAGTTCAATGCAA 309 |||||||||||||||||||||||||||| ||||| Sbjct 1128 ACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161 > AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8969162-8970298 FORWARD LENGTH=1137 Length=1137 Score = 71.3 bits (38), Expect = 5e-12 Identities = 230/319 (72%), Gaps = 28/319 (9%) Strand=Plus/Plus Query 1 ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGTTGTCGTGGGGCAGCAAGTTC 60 ||| |||||||||| ||||| || ||||||||||| || ||| |||| ||||||| | Sbjct 829 ATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTG 888 Query 61 TTCTTATCAGTGGATATGAGAGTTCTCACCGGCAATGGGTTT-ATGTTTTC--GTTTAGT 117 |||||| | ||||||||| | |||| | || |||| | | |||| | |||| Sbjct 889 TTCTTAGCTGTGGATATG-CA---CTCA-C-TTAA---GTTTCA-G-TTTCAAG-TTAGA 936 Query 118 GGTGCAAGTTTCTTCATTGATGAGGAGAAGAAAATCGCTGTGGTTTTTAATAAAGGCAAA 177 | | | |||||||| || || |||||||||| | | | ||| |||||| ||||| | ||| Sbjct 937 GCTTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAA-G-AAA 994 Query 178 GACATGA--T-G-GGGAT-GCGTAACGCAGCTTTCATCATCGGAGAGGATGGATCTTTTA 232 || | | | | | | || ||| ||||| |||| | |||| ||||||| | | Sbjct 995 AACGTTATTTAGCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGGG 1054 Query 233 AAGAAGTGGATTTTGGAGAATCTC-G-AAACAGAA-ATCTCGAACCACTTGTGTGCTCTT 289 || ||||||| || | |||| || | | ||| || | | | |||||||||||||||| Sbjct 1055 AACAAGTGGACCTT-G-GAATGTCTGTAGACA-AATTTGTTTACCCACTTGTGTGCTCTT 1111 Query 290 ATGTTCCAAGTTCAATGCA 308 |||||||||||| | |||| Sbjct 1112 ATGTTCCAAGTTTAGTGCA 1130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14778718206 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5