BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479553
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20300.1 | Symbols: | Protein of unknown function (DUF3537)... 2505 0.0
AT1G50630.1 | Symbols: | Protein of unknown function (DUF3537)... 850 0.0
> AT3G20300.1 | Symbols: | Protein of unknown function (DUF3537)
| chr3:7079617-7081921 REVERSE LENGTH=1686
Length=1686
Score = 2505 bits (1356), Expect = 0.0
Identities = 1564/1661 (94%), Gaps = 28/1661 (2%)
Strand=Plus/Plus
Query 1 TCCAACCGCGTCATCAATTTATATTT-G---GC---aaaaaaaaaa--CAGAGCCTCTCC 51
|||||||||||||||||||||||||| | | |||||||||| ||||||||||||
Sbjct 22 TCCAACCGCGTCATCAATTTATATTTAGACAACAAAAAAAAAAAAAGCCAGAGCCTCTCC 81
Query 52 TCAAATTTCTCACTTT-CCGAGCGATCGTCCATGGCGGACATCGACATCGGGACCGCAGC 110
||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 82 GGTAATTTCTCATTTTCCCGAGCGATCGTCCATGGCGGACATCGACATCGGAACCGCAGC 141
Query 111 AACAACAGGAGGAAACGACGGAAGAGGA---ACACGAGAACGTCTAATAAACCGAGAAAC 167
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 142 AACAACAGGAGGAAACGAAGGAAGAGGAGGCACACGAGAACGTCTAATAAACCGAGAAAA 201
Query 168 CAAGTTCACACGTAGCGTATCTCACGCACAAGACGAGCTCCAGAGTTTCCGGAAATATCT 227
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 202 CAAGTTCACACGTAGCGTATCTCACGCACAAGACGAGCTCCACAGTTTCCGGAAATATCT 261
Query 228 GCGATGGATGTGCGTGGATCAGTCGAGTCCTTGGACCGCGGTTCTCTCTTGGTCTATGTT 287
|||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 262 CCGATGGATGTGCGTAGATCAGTCGAGTCCTTGGACGGCGGTTCTATCATGGTCTATGTT 321
Query 288 TGTTGTTTTCACGCTCGTTGTTCCTGCCACGTCTCACTTCATGCTCGCTTG-TGCTGACT 346
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 322 CGTTGTTTTCACGCTCGTTGTTCCTGCCACGTCTCACTTCATGCTCGCTTGCT-CTGACT 380
Query 347 GCGATAGCCATCACTCGAGGCCGTACGATTCCGTTGTCCAGCTTTCTCTTAGCAGTTTCG 406
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 381 GCGATAGCCATCACTCTAGGCCGTACGATTCCGTTGTTCAGCTTTCTCTTAGCAGTTTCG 440
Query 407 CTGCTCTTTCGTTT-TTATGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTT 465
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CTGCTCTTTCGTTTCTT-TGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTC 499
Query 466 CTGTTCTTTGATAAGCTTTGGGATGAGAGCGAGACGGTTCGTCGAGGCTACACCAATCAG 525
|| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 500 CTATTCTTTGATAAGCTTTGGGATGAGAGCGAGACCGTTCGTCTAGGCTACACCAATCAG 559
Query 526 CTCAATAGGTCGCTCAAGATTCTCTCCTACTTCGTCACTCCTTGTTTCTTAGCGATGAGC 585
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 560 CTCAATAGATCGCTTAAGATTCTCTCCTACTTCGTGTCTCCTTGTTTCTTAGCGATGAGC 619
Query 586 TCTTATAAGATATGGTGGTATGCTTCAGGAGCTTCTCAGATTCCTTTCCTTGGTAATGTT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TCTTATAAGATATGGTGGTATGCTTCAGGAGCTTCTCAGATTCCTTTCCTTGGTAATGTT 679
Query 646 ATCTTGAGTGATACAGTCGCTTGTCTGATGGAACTCTGCTCGTGGCTGTACCGTACTACC 705
||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 680 ATCTTGAGTGATACAGTTGCTTGTTTGATGGAGCTCTGCTCGTGGTTGTACCGTACTACC 739
Query 706 GTGATCTTTCTGGTTTGCGTCCTCTTTCGTCTCATCTGTCATCTCCAGATTCTTAGGCTG 765
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 740 GTGATCTTTCTGGTTTGTGTCCTCTTCCGTCTCATCTGCCATCTCCAGATTCTTAGGCTG 799
Query 766 CAAGACTTTGCTCAGGTTTTCCAGATGGATTCTGATGTTGGTTCTATCTTGTCTGAACAT 825
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 800 CAAGACTTTGCCCAGGTTTTCCAGATGGATTCAGATGTTGGTTCTATCTTGTCTGAACAT 859
Query 826 CTCCGCATCAGACGTCACCTGAGAATCATCAGCCACAGATACCGAACCTTTATATTGTTG 885
||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 860 CTCCGTATCAGACGTCATCTGAGAATCATCAGCCACCGATACCGAACCTTTATATTGTTG 919
Query 886 TCCTTGATTCTT-GTCACTGGAAGTCAGTTTTACTCTCTGCTTATTACCACTAAGGCCTA 944
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TCCTTGATA-TTAGTCACTGGAAGTCAGTTTTACTCTCTGCTTATTACCACTAAGGCCTA 978
Query 945 CGCTGAATTGAATATCTACAGAGCAGGAGAACTAGCACTATGTTCAATGACGCTGGTCAC 1004
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 979 CGCTGAATTGAATATCTACAGAGCTGGAGAACTAGCACTATGTTCAATGACGCTGGTCAC 1038
Query 1005 CGCACTGCTCATTCTACTACGAAGTGCCTCAAAGATCACACACAAGGCTCAGGCAGTGAC 1064
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1039 TGCACTGCTCATTTTACTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCGGTGAC 1098
Query 1065 TTGTCTTGCAGCCAAGTGGCATGTCTGTGCGACAATAGAATCCTTTGAGACAGTGGATGG 1124
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1099 TTGTCTTGCAGCCAAGTGGCATGTATGTGCGACGATAGAATCCTTTGAGACTGTGGATGG 1158
Query 1125 AGAGACTCCAAGGTTAGTTGATAGAGCAAGCGGACACGGATACTATCCAACAGATGATGA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGAGACTCCAAGGTTAGTTGATAGAGCAAGCGGACACGGATACTATCCAACAGATGATGA 1218
Query 1185 TAATGGAGAATCAGACAGTGAAGATTATGGAGACGAAGAAGATGATTTCGATAACAACAA 1244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TAATGGAGAATCAGATAGTGAAGATTATGGAGACGAAGAAGATGATTTCGATAACAACAA 1278
Query 1245 TCTCATTCCTGCTTATGCTTACAGCACCATATCATTCCAAAAAAGGCAAGCTCTAGTTAA 1304
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 1279 TCTCATTCCTGCTTATGCTTATAGCACCATATCATTCCAAAAACGGCAAGCTCTAGTGAA 1338
Query 1305 TTACTTTGAGAACAATAGAGCAGGAATCACGGTGTTTGGGTTTACACTTGATAGAAGTAC 1364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1339 TTACTTTGAGAACAATAGATCAGGAATCACGGTGTTTGGGTTTACACTTGATAGAAGCAC 1398
Query 1365 TCTCCATACAATCTTCGGTATCGAAATGTCGCTTGTTCTCTGGTTACTTGGTAAGACCAT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 TCTCCATACAATCTTCGGTATCGAAATGTCGCTTGTTCTCTGGTTACTTGGTAAGACCAT 1458
Query 1425 TGGAATTTCTTGAAGCATTCTTTGGATCATTAAAGCTCTCAAAGTTTTGGCTCCCTTGTT 1484
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1459 TGGAATTTCTTGAATCATTCTTTGGATCATTAAAGTTCTCAAAGTTTTGGCTCCCTTGTT 1518
Query 1485 GGATGATGTTAGTATATT--T-T-T-TATGC-C-GAGGCTCTATGTATAATAACAATTTC 1537
|||||||||| |||||| | | | ||| | | ||||||||||||| |||||| ||||
Sbjct 1519 GGATGATGTTGGTATATGCATGTATGTATACACAGAGGCTCTATGTAAAATAACGTTTTC 1578
Query 1538 TCATTTTGT-ATCACTGTAAATCTTCTTATTTGTTCTTTAACAAGTCGATTTTGTAATAG 1596
|| |||| | ||||||||||||| |||||||| |||||||||| |||||||| |||||||
Sbjct 1579 TCGTTTTTTTATCACTGTAAATCATCTTATTTTTTCTTTAACATGTCGATTT-GTAATAG 1637
Query 1597 ATTTCATGTGTTCAATGAGTGATCTTACAGTAAATTAGATT 1637
| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1638 AATTCATGTGTTCAACAAATGATCTTACAGTAAATTAGATT 1678
> AT1G50630.1 | Symbols: | Protein of unknown function (DUF3537)
| chr1:18751456-18753669 REVERSE LENGTH=1660
Length=1660
Score = 850 bits (460), Expect = 0.0
Identities = 1031/1300 (79%), Gaps = 65/1300 (5%)
Strand=Plus/Plus
Query 182 GCGTATCTCACGC-ACAAGACGAGCTCCAGAGTTTCCGGAAATATCTGCGATGGATGTGC 240
|||| || ||| | |||||||||||| || || ||||| ||||| || | ||||||||
Sbjct 186 GCGTTTCACAC-CAACAAGACGAGCTACACAGCTTCCGCAAATACCTAAGGTGGATGTGT 244
Query 241 GTGGATCAGTCGAGTCCTTGGACCGCGGTTCTCTCTTGGTCTATGTTTGTTGTTTTCACG 300
|| ||||| || ||||| ||||| ||| ||||||||||| | ||||| | || |||||
Sbjct 245 GTAGATCACTCTAGTCCATGGACAGCGATTCTCTCTTGGACCATGTTCATCGTCTTCACA 304
Query 301 CTCGTTGTTCCTGCCA-CGTCTCACTTCATGCTCGCTTGTGCTGACTGCGATAGCCATCA 359
||||| ||||| || | | ||||||||| | |||||||||||||| ||||| || | ||
Sbjct 305 CTCGTCGTTCCGGCGATC-TCTCACTTCCTCCTCGCTTGTGCTGATTGCGACAGTTACCA 363
Query 360 CTCGAGGCCGTACGATTCCGTTGTCCAGCTTTCTCTTAGCAGTTTCGCTGCTC-TTTCGT 418
|| || || ||||| ||||| || ||||||||||| ||||| |||| | | | || |
Sbjct 364 TTCAAGACCTTACGACTCCGTCGTTCAGCTTTCTCTAAGCAGCGTCGCCAC-CGTCTC-T 421
Query 419 TT-TTATGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTTCTGTTCTTTGAT 477
|| | |||||| ||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 422 TTCCTCTGTCTCACCAGATTCGTTAGCAAGTATGGTCTTCGACGCTTCCTCTTCTTTGAT 481
Query 478 AAGCTTTGGGATGAGAGCGAGACGGTTCGTCGAGGCTACACCAATCAGCTCAATAGGTCG 537
|| || ||||| |||||||| || ||||| ||| || |||||||| ||||||| |||
Sbjct 482 AAACTCTGGGACGAGAGCGAAACCGTTCGACGAAATTATACCAATCAACTCAATACTTCG 541
Query 538 C-TCAAGATTCTCTCCTACTTCGTCACTCCTTGTTTCTTAGCGATGAGCT-CTTATAAGA 595
| || | ||| | |||||||| || | ||||||||||| ||| ||||| | | || || |
Sbjct 542 CTTC-ATATTGTGTCCTACTTTGTGATTCCTTGTTTCTCAGCAATGAG-TGCATACAAAA 599
Query 596 TATGGTGGTATGCTTCAGGAGCTTCTCAG-ATTCCTTTCCTT-GGTAATGTTATCTTGAG 653
| |||||||| |||||||| | |||| | || ||||| || || |||| | |||| ||
Sbjct 600 TTTGGTGGTACGCTTCAGGTGGATCTC-GAATACCTTT-TTTAGGAAATGCTGTCTTAAG 657
Query 654 TGATACAGTCGCTTGTCTGATGGAACTCTGCTCGTGGCTGTACCGTACTACCGTGATCTT 713
|||||||| |||||| | ||||| || || || ||||| ||||| || ||||| |||||
Sbjct 658 CGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTATACCGAACAACCGTAATCTT 717
Query 714 TCTGGTTTGCGTCCTCTTTCGTCTCATCTGTCATCTCCAGATTCTTAGGCTGCAAGACTT 773
|| ||||| || ||||| |||||||| || ||||| ||||| ||| | || ||||||||
Sbjct 718 CCTTGTTTGTGTTCTCTTCCGTCTCATTTGCCATCTTCAGATCCTTCGTCTTCAAGACTT 777
Query 774 TGCTCAGGT-TTTCCAGATGGATTCTGATGTTGGTTCTATCTTGTCTGAACATCTCCGCA 832
|||| || | ||| ||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 778 TGCTAAGCTCTTT-CAGATTGATTCAGATGTTGGTTCTATCTTGTCTGAACATCTTCGTA 836
Query 833 TCAGACGTCACCTGAGAATCATCAGCCACAGATACCGAACCTTT-ATA-T-TGTTGTCCT 889
|||||||||| || |||||||| ||||| ||||| || | ||| || | |||| | |
Sbjct 837 TCAGACGTCATCTTAGAATCATTAGCCATAGATATCGTTC-TTTCATTCTATGTT-TA-T 893
Query 890 TGATTCTTGTCACTGGAAGTCAGTTTTACT-CTCTGCTTATTACCACTAAGGCCTACGCT 948
||||||| || |||||||||||||||| || ||||||||||||| || || |||||| ||
Sbjct 894 TGATTCTAGTTACTGGAAGTCAGTTTT-CTTCTCTGCTTATTACTACCAAAGCCTACACT 952
Query 949 GAATTGAATATCTACAGAGCAGGAGAACTAGCACTATGTTCAATGACGCTGGTCACCGCA 1008
||| | |||||||||||||| |||||||| || || ||||| ||||| | || || |||
Sbjct 953 GAAGTCAATATCTACAGAGCTGGAGAACTCGCTCTTTGTTCTATGACATTAGTTACTGCA 1012
Query 1009 CTGCTCATTCTACTACGAAGTGCCTCAAAGATCACACACAAGGCTCAGGCAGTGACTTGT 1068
|| || || ||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1013 CTTCTGATACTATTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCTGTGACATGT 1072
Query 1069 CTT-GCAGCCAAGTGGCATGTCTGTGCGACAATAGAATCCTTTGA---GACAGT-G---- 1119
|| || || || |||||||| || || || ||||||||||||| |||||| |
Sbjct 1073 -TTAGCTGCGAAATGGCATGTATGCGCCACGTTAGAATCCTTTGATCAGACAGTAGAATC 1131
Query 1120 ----GAT--G---G-AGAGACTCCAAGGTTAGTTGATAGAG-CAAGCG--GACA-CGGAT 1165
||| | | ||||||||||| || |||| |||| ||| | || | | |
Sbjct 1132 CTTTGATCAGACAGTAGAGACTCCAACTTTGGTTGCTAGAAACAA-CAATGATAACA-AC 1189
Query 1166 ACTATCCAACAGATGATGATAA-TGGA--GAATCAGACAGTGAAGATTATGGAGACGAAG 1222
| | |||| |||| || || | || |||||||||||||| || ||||| || ||||
Sbjct 1190 AATGTCCAT--GATGTTGTTACGTTGACAGAATCAGACAGTGACGAGTATGGTGATGAAG 1247
Query 1223 AAGATGATTTCGATAACAACAATC-TCATTCCTGCTTATGCTTACAGCACCATATCATTC 1281
|||||||| | || || || | | ||||||||| |||||||| ||| ||||| ||||||
Sbjct 1248 AAGATGATCTAGACAATAATGA-CATCATTCCTGTTTATGCTTTCAGTACCATGTCATTC 1306
Query 1282 CAAAAAAGGCAAGCTCTAGTTAATTACTTT-GAGAACAATAGAGCAGGAATCACGGTGTT 1340
|||||| ||||||||||||| | ||| ||| ||||| || || ||||||||||| ||||
Sbjct 1307 CAAAAACGGCAAGCTCTAGTGAGTTA-TTTCGAGAATAACAGCGCAGGAATCACAGTGTA 1365
Query 1341 TGGGTTTACACTTGATAGAAGTACTCTCCATACAATCTTCGGTA-TCGAAATGTCGCTTG 1399
||||||||||||||||||| |||||||||||||||||||||| | | ||| |||| ||||
Sbjct 1366 TGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTCGG-ACTTGAATTGTCTCTTG 1424
Query 1400 TTCTCTGG-TTACTTGGTAAGACCATTGGAATTTCTTGAA 1438
|||||||| || |||||||| |||||||||||||||||||
Sbjct 1425 TTCTCTGGCTT-CTTGGTAAAACCATTGGAATTTCTTGAA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5