BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479554
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene respons... 1611 0.0
> AT3G20310.1 | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response
factor 7 | chr3:7084806-7086805 REVERSE LENGTH=2000
Length=2000
Score = 1611 bits (872), Expect = 0.0
Identities = 1150/1275 (90%), Gaps = 55/1275 (4%)
Strand=Plus/Plus
Query 40 tctcttctccatcacattacttctggttttacacctttcttcttctCCATGAGGAAAGGG 99
|||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 67 TCTCTTCTTCATCACATTACTTCTGGCTTTACATCTTTTTTCTTCTCCATGAGGAAAGGG 126
Query 100 AGAGGCTCTTCCGTCGTTGGACCCGCCCTTCCAGTAACCGCCGGTGGATCTGTGAAGGAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGAGGCTCTTCCGTCGTTGGACCCGCCCTTCCAGTAACCGCCGGTGGATCTGTGAAGGAG 186
Query 160 CCGAGGTATAGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCGGCTGAGATCCGTGAT 219
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 CCGAGGTATAGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCAGCTGAGATCCGTGAT 246
Query 220 CCATTAAAGAAGTCTCGTGTTTGGCTCGGTACTTTCGATTCCGCCATAGAAGCTGCACGC 279
|||||||| || |||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 247 CCATTAAAAAAATCTCGTGTCTGGCTCGGTACTTTCGATTCCGCCGTAGATGCTGCACGC 306
Query 280 GCTTACGATACCGCCGCACGTAACCTCCGTGGTCCAAAAGCTAAGACCAATTTCCCGATC 339
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 307 GCTTACGATACCGCCGCACGTAACCTCCGTGGTCCAAAGGCCAAGACCAATTTCCCGATC 366
Query 340 GATTGCTCTCCTTCTTCTCCTCTCCAACCTCTCAACTACCTCCAGAATCAGAACCTCTGT 399
||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 367 GATTGTTCTCCTTCTTCTCCTCTCCAACCTCTCACCTACCTCCACAATCAAAACCTCTGT 426
Query 400 TCTCCTGCGGCGAATCAGAACCAGATCGATCCGTTTATGGACCATCGGTTATACGGCGGA 459
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCTCCTCCGGTGATTCAGAACCAGATCGATCCGTTTATGGACCATCGGTTATACGGCGGA 486
Query 460 GGTAATTTCCAGGAGCAGCA--A-CAG-A--TTATTAGTCGGCCGGCGAGTAGCAGCATG 513
|||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 487 GGTAATTTCCAGGAGCAGCAGCAGCAGCAGATTATTAGTCGGCCGGCGAGTAGCAGCATG 546
Query 514 AGCAGCACCGTCAAATCATGTAGCGGACCGAGACCGATGGAAGCCGCGGCGGCGTCTTCG 573
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGCAGCACCGTTAAATCTTGTAGCGGACCGAGACCGATGGAAGCCGCGGCGGCGTCTTCG 606
Query 574 TCGGTGGCGAAACCGTTACATGCGATAAAGAGATACCCGAGGACTCCACCGGTGGCCCCG 633
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||
Sbjct 607 TCGGTGGCGAAACCGTTACATGCGATTAAGAGATATCCGAGAACTCCACCGGTAGCTCCG 666
Query 634 GAGGATTGTCATAGCGATTGCGATTCTTCGTCGTCGGTAATTGACGACGGAGACGATATA 693
||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 667 GAGGATTGTCATAGCGACTGCGATTCTTCGTCGTCTGTTATTGACGACGGAGATGATATC 726
Query 694 GCATCTTCGTCTTCGCGCCGGAAACCGCCGTTTCAGTTTGATCTTAATTTCCCGCCGTTG 753
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 727 GCATCTTCGTCTTCCCGCCGGAAAACGCCGTTTCAGTTTGATCTTAATTTCCCGCCGTTG 786
Query 754 GATGGCGTTGACTTATTCGCTGGCGGGACAGATGATCTCCACTGTACCGATCTACGTCTC 813
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 787 GATGGCGTTGACTTATTCGCTGGCGGGATAGATGATCTCCACTGTACCGATCTACGTCTC 846
Query 814 TGATTT-CGTGGTaaa-aaaaaaaGATCCGTTGATTT-ACACAAA-----TT-T----TT 860
|||||| | || | | ||||||| ||||||||||| ||||||| || | ||
Sbjct 847 TGATTTGC-TGCTTTACAAAAAAA-ATCCGTTGATTACACACAAAAAAAATTCTCAAATT 904
Query 861 --ACAAAATGAAAATTTTCTGCTCCttttttttttC-ATTTTCCTTTGATATCATATTGa 917
||||||||| || ||| ||||| |||| |||||| |||||||||||||||||||||||
Sbjct 905 TTACAAAATGATAACTTTATGCTC-TTTTGTTTTTCCATTTTCCTTTGATATCATATTGA 963
Query 918 aagaaaaaaaaaaggaagaacaaaaaaaa--GATTGAGCGTGATGATTTTTATCATCAAC 975
|||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 964 AAGAGAAAAAAA-GGAAGAACAAAAAAAAAAGATTGAGCGTGATGATTTT-ATCATCAAC 1021
Query 976 GAAGATGATGACGATTAAAAagagagagagagTGTGTTAAGATCTTTTACTGTAAGAACC 1035
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1022 GAAGATGATGACGATTAAAAAGAGAGAGAGATTGTGTTAAGATCTGTTACTGTAAGAACC 1081
Query 1036 AGATCTGGGTTTCGTTTCAACCC-TTTGTT---ATACAT-AT--AT-AAC--------A- 1078
||||||||||||| ||| | | ||| || ||| | || | ||| |
Sbjct 1082 AGATCTGGGTTTCATTTTTATCTGTTTCTTCTTATAAAAGATCCAACAACCCTTTGTTAC 1141
Query 1079 -TAT-TCTGA-AG-CTGA---TGATGATGATTTCTAAATGATTCAAATCCATAATCTTTA 1131
||| | | | | |||| || ||||||||||| |||||||||||||||| |||||||
Sbjct 1142 ATATATATAACATTCTGAAGCTGGTGATGATTTCTGAATGATTCAAATCCATTATCTTTA 1201
Query 1132 GATTTCTACTTCTTCATAGAGTATCCCCTGATGTGAGTAGGAAGCTACATTTACACTA-T 1190
||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct 1202 GATTTCTACTTATTCATAGAGTGTCCCCTGATGTAAGTAGGAAGCTGCATTTACA-TAGT 1260
Query 1191 ATGTAACAGAACCACACAGGGCACAAATATTTGTTTGTCTCTCGTCTCTTGGCTTCATCT 1250
|||||||||||||||||||||||||| ||||||||||| | | |||||||||||| ||||
Sbjct 1261 ATGTAACAGAACCACACAGGGCACAAGTATTTGTTTGTGTTTTGTCTCTTGGCTTGATCT 1320
Query 1251 TGATTAATTCAGGGT 1265
|||| ||||||||||
Sbjct 1321 TGATCAATTCAGGGT 1335
Score = 878 bits (475), Expect = 0.0
Identities = 731/843 (87%), Gaps = 63/843 (7%)
Strand=Plus/Plus
Query 1053 CAACCCTTTGTTATACATATATAACATATTCTGAAGCTGATGATGATGATTTCTAAATGA 1112
||||||||||||| | ||||||||| |||||||||||| | ||||||||||| |||||
Sbjct 1128 CAACCCTTTGTTACATATATATAAC--ATTCTGAAGCTG--G-TGATGATTTCTGAATGA 1182
Query 1113 TTCAAATCCATAATCTTTAGATTTCTACTTCTTCATAGAGTATCCCCTGATGTGAGTAGG 1172
||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1183 TTCAAATCCATTATCTTTAGATTTCTACTTATTCATAGAGTGTCCCCTGATGTAAGTAGG 1242
Query 1173 AAGCTACATTTACACTA-TATGTAACAGAACCACACAGGGCACAA--A--T-ATT-TG-T 1224
||||| |||||||| || ||||||||||||||||||||||||||| | | || || |
Sbjct 1243 AAGCTGCATTTACA-TAGTATGTAACAGAACCACACAGGGCACAAGTATTTGTTTGTGTT 1301
Query 1225 TTGTCTC-T--CGT-CTCTTG-GC--TTCA-----TCTT-GATT----AA-T-----TCA 1261
||||||| | | | ||||| | |||| |||| ||| || | | |
Sbjct 1302 TTGTCTCTTGGCTTGATCTTGATCAATTCAGGGTTTCTTCTATTCAACAAGTAAAGCTTA 1361
Query 1262 G-GG-TCT-TGAGATGGAAGCAATAAAAAGATTG-AAGAAAGAAAGACGGTGAAGCTCCT 1317
| || ||| |||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 1362 GTGGTTCTCTGAGATGGAAGCAATAAAAAGA-TGAAAGGAAGAAAGACGGTGAAGCTCCT 1420
Query 1318 TTGCTATCTAATTGGGTGATTCGAAGAGGGATGTTAGAATACTCATTGTCATTCTTAAGC 1377
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 1421 TTGCTATCTAATTGGGTGATTCGAAGA-GGAAGTTAGAATACTCATTGTCATTGTTAAGC 1479
Query 1378 CTGAAGTATTCATTCATCAGC-ATGGAGACAAGAGAGGCTTTCCCTTTCGTGTA-TCTAT 1435
|| |||| ||||||||||||| | |||||||||| ||||||||||||| ||||| | ||
Sbjct 1480 CTCAAGTTTTCATTCATCAGCGA-GGAGACAAGAAAGGCTTTCCCTTTTGTGTACCCAAT 1538
Query 1436 CG-A-CGTTTGGATGTTAAACAACAGCGAGATTAAGGGCATTGTCAATGGGCGGTGAGTG 1493
| | |||||||| | || |||| |||||||||||||| ||||||||||||||||||
Sbjct 1539 -GAATATTTTGGATGGTGAAGAACATAGAGATTAAGGGCATGGTCAATGGGCGGTGAGTG 1597
Query 1494 ATTTGGGTGTGATCGATAAAGCTCAATGACCAAAGGCCAAATCTTTAGGTTAAAGTTTGG 1553
||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1598 GTTTTGTTGTGATCGATAAAGCTCAATGAGCACAGGCCAAATCTTTAGGTTAAAGTTTGG 1657
Query 1554 TGGCTGAGATGATTGTTTTGATCTTTAAGAGCTGTGGGTTGGGGTGGCA-AATTTCGTTG 1612
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 1658 TGGCTGAGATGATTGTTTTGATCTTTAAGAGCTGTGGGTTGAGGTGGCAGAATT-CGTTG 1716
Query 1613 TGT-TTTGACCTTTTTGATTTGAATTTGCTGGTAGAGAGTTGTCCCAAATTTGGTACCTA 1671
||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 1717 TGTGTTTGACCTTTTTGATTTGAATTTGCTGGTAGAGAGTTTTCCCAATTTTGGTATCTA 1776
Query 1672 CTTTGCTTCTATGCCACGGATTCAGACAGTGAATCTTTGTGTCTAAAGCAAAA-CCGAGt 1730
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1777 CTTTGCTTCTATGCCACGGATTCAGACAGTGAATCTTTGTGTCTGAAGCAAAAACCGAGT 1836
Query 1731 -ttttttAACCGTTTTGGG-TAGGCTTCTTCTTAAGTTAAAGTGGAAGTCAAAAGCAATG 1788
|||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1837 ATTTTTTTACCGTTTTGGGGTAGGCTTCTTCTTAACTTAAAGTGGAAGTCAAAAGCAATG 1896
Query 1789 TCTTGttttttttttttACTCTTACCGATTTATGACTTTAACTGATCTCAAGTGGCTTTT 1848
||||||| |||| ||| | || |||||| ||| |||||||||||||| ||||||
Sbjct 1897 TCTTGTTATTTTC----ACTGTAAC-GATTTAAGAC---AACTGATCTCAAGTCGCTTTT 1948
Query 1849 CCT 1851
|||
Sbjct 1949 CCT 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91615994625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5