BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479560
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:70997... 773 0.0
> AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:7099771-7101636
REVERSE LENGTH=1320
Length=1320
Score = 773 bits (418), Expect = 0.0
Identities = 540/598 (90%), Gaps = 11/598 (2%)
Strand=Plus/Plus
Query 175 TATC-ATCAC-GTGATA-GGTCTAAGAGATTGTCCTCCATCGTCTTATACTATCTCAAGA 231
|||| | ||| |||| | ||||| ||||| ||||||||||||| | |||| ||||||||
Sbjct 208 TATCGAGCACGGTGA-AGGGTCTGAGAGAACGTCCTCCATCGTC-T-TACTCTCTCAAGA 264
Query 232 TGGAGTCTTTCAATACACTCATGAAGTCTGTTTACACCGAGAGATATGAATCTCGTCCTT 291
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 265 TGGAGTCTTTCAACACACTCATGAAGTCTGTTTACACTGAGAGATACGAATCTCGTCCTT 324
Query 292 TTAGGGTCGGTAGATACAATTGGACGCTTGTCGTATATCCTAAGGGGAACAAGAATGATA 351
||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 325 TTAGGGTCGGTAGATACAACTGGACGCTTGTTGTGTATCCGAAGGGAAACAAGAACGATA 384
Query 352 ACGGTACAGGGTACATTTCGCTTTATGTCGTCTTAGACATCTCAACTCTAACCTCTCCAC 411
||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||| ||
Sbjct 385 ACGGTACAGGGCACATTTCGCTATACGTCGTCTTAGACAACTCAACTCTCACCTCT-CAA 443
Query 412 A-TGAAGAGGTTCATGTAGATCTCAGATTTTACGTCTTCAACAAGAAAGAGAAGAAGTAC 470
| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 444 AGTGAAGAGGTTCATGTAGATCTCAGATTTTACGTATTCAACAAGAAAGAGACGAAGTAC 503
Query 471 TTTACGATCCAAGATACTGATGTATGGCGATTCAGTGCAATCAAAACCATGTGGGGGTTT 530
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 504 TTTACGATCCAAGATACTGATGTATGGCGATTCAGTGCAATCAAAAGAATGTGGGGATTT 563
Query 531 TCTAAGGTTCTTCCTCTGACTACGTTTAACAACCTGAAAAATGGCTACCTTTATGATATC 590
||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
Sbjct 564 TCTAAGGTTCTTCCTCTGATTACGTTTAACAACCTAAAAAATGGATACCTTTATGACGTT 623
Query 591 GACCATTGCGAGTTTGGCGGCGTTGACGTCATCATTCCAGCATTCTATGAGAAGTCGGAA 650
|||||||| |||||||||| ||||||| ||||||||| ||||||| || || ||||||
Sbjct 624 GACCATTGTGAGTTTGGCG---TTGACGTTATCATTCCACCATTCTACGAAAAATCGGAA 680
Query 651 CTTTTCTCTGTCACCAAGAGTTTTCCAAACGAAAGATTCACCTGGTTTATTCAGGGATTC 710
||||||||||||||||||||||||| | | ||||||||||||| |||||| |||| |
Sbjct 681 GTTTTCTCTGTCACCAAGAGTTTTCCGAGCCCGAGATTCACCTGGTATATTCAAGGATAC 740
Query 711 TCGACACTGCCTACTGATTACCTATCAGAGGAGTTCATCATCGGAAGAAAAAGCTGGA 768
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 741 TCGACACTGCCTACTGATTACCTATCAGAGGAGTTCATCATCGGAGGAAAAAGCTGGA 798
Score = 630 bits (341), Expect = 8e-180
Identities = 405/434 (93%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 817 CAAAACCTTATGACAAGGTTTACGTACGAGCCAAGCTTCGTGTTCCTAACCAATTCCCAT 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 889 CAAAACCTTATGACAAGGTTTACGTACGAGCCAAGCTTCGTGTTCCTAACCAATTCGGAT 948
Query 877 CCCAATCCAA-CACTGTTTTGGAAAGGCCACTTGATAACTGGTTCAGTCCCCAAACAATC 935
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CCCAATCCAATCTC-GTTTTGGAAAGGCCACTTGATAACTGGTTCAGTCCCCAAACAATC 1007
Query 936 GGGTGGGGTTACGCTGACTTCATGCCTCTTTCTGATCTGAGAAATTCATCAAAGGGTTT- 994
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GGGTGGGGATACGCTGACTTCATGCCTCTTTCTGATCTGAGAAATTCATCAAAGGGTTTT 1067
Query 995 CGTTGTGAATGATATGTTGGTTGTTCAAGTCGCGATGGAGGAAATTTCTTCAACAAAGTA 1054
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1068 C-TTGTGAATGATATGTTGGTTGTTCAAGTCGCTATGGAGGAAATTTCTTCTACAAATTA 1126
Query 1055 CCTTCCCAATTAGACTTGTATAGAAGCTCAAATCGTGTGGCAGCTA-A-TCTATGTGTTA 1112
||||||||| ||||||||| |||||||| ||| |||| | || ||| | | |||||||||
Sbjct 1127 CCTTCCCAAATAGACTTGTTTAGAAGCTTAAACCGTG-G-CATCTATAATATATGTGTTA 1184
Query 1113 TATAGTCCTATCTTTTGTGCTTTAACTTAATATCATGTTTCTTATGGTTTGTGTTTCAAG 1172
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1185 TATAGTCTTATCTTTTGTGCTTTAACTTAATATCATGTTTCTTATGCTTTGTGTTTCAAG 1244
Query 1173 TGTTCTTTC---C-AATGGAAAACCTTATTTCTTTCTCCCACTTGGTCTAAAATAAATGA 1228
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TGTTCGTTCTTTCGAATGGAAAACCTTATTTCTTTCTCCCACTTGGTCTAAAATAAATGG 1304
Query 1229 ATATATCATTTAAA 1242
||||||||||||||
Sbjct 1305 ATATATCATTTAAA 1318
Score = 235 bits (127), Expect = 7e-61
Identities = 174/196 (89%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 1 AACAAGTCTCACACCGACTCTCTAAACTTCATTCATAGATCTTTGACATGATGAG-TA-- 57
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1 AACAAGTCTCACAGTGACTCTCTAAACTTCATTCATAGATCTTTGAAATGATGAGCTATC 60
Query 58 ACTACATAGACACCTTATGCATGGT--TT-CTCTCCTCTCTTGTCTCTTCATTACCTCTT 114
|||||||| ||||||||||||| || || ||||| | |||||||||||||| |||||||
Sbjct 61 ACTACATAAACACCTTATGCATTGTAATTTCTCTCTTGTCTTGTCTCTTCATCACCTCTT 120
Query 115 GTTTTGCAGGACCGGTCCCAAACCAGGAGAATGGCTCTCAGAAACTTATCCCCACTCAAA 174
|||||||||||| || ||||||||||| ||||| ||||||||| || |||||||||| |
Sbjct 121 CTTTTGCAGGACCAGTTCCAAACCAGGAAAATGGATCTCAGAAAATTTTCCCCACTCAGA 180
Query 175 TATCATCACGTGATAG 190
||||||||||||||||
Sbjct 181 TATCATCACGTGATAG 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5