BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479561
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:71053... 1808 0.0
AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:70997... 368 7e-101
> AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:7105371-7107225
FORWARD LENGTH=1396
Length=1396
Score = 1808 bits (979), Expect = 0.0
Identities = 1273/1408 (90%), Gaps = 47/1408 (3%)
Strand=Plus/Plus
Query 1 GCATTATTAACTAAGCATGTATCTCCCACTAA-G-------TACTAACCATATAAGAGTA 52
|||||||||||||||||||||||||||||||| | |||||||||||| | |||
Sbjct 4 GCATTATTAACTAAGCATGTATCTCCCACTAAGGCACAAATTACTAACCATAT-A-AGTC 61
Query 53 ACAGTACTCTCAGTTCTGTACACTTCATTC-CAAAACCAACCTTAAGAGATGACGAGCCA 111
|||||||||| |||||| | ||||||| | |||||||||| |||||||||| |||||||
Sbjct 62 TCAGTACTCTCTGTTCTGCAAACTTCATACACAAAACCAACATTAAGAGATGGCGAGCCA 121
Query 112 CTCCAGAAACACAAGCTCTATTGCTTATCTCTTGCTTTGTTTCTTCATTACCTCTGCGAC 171
|| ||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||| ||
Sbjct 122 CTACAGAAACACAAGCGCTATTGCTTATCTATTGCTTTGTCTCTTCATTACATCTGCCAC 181
Query 172 TGCACATTCCTTCATACGACAATTCACTGATGGGGACCTCAACACAAATCTGCAGCAAAC 231
|||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 182 TGCACATTCCTTCATACGACAAATCACTGAT---GACCTCAAAACAAATCTGCAG----C 234
Query 232 AGAGGAGGTAGGCGCAGAACCAATCCGAAACCTGGACGTAGGACATTACTTACAAGAAAA 291
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 235 --AGGAGGTAGGAGCAGAACCAATCCAAAACCTGGACGTAGGACATTACTTACAAGAAAA 292
Query 292 TAAGGAGATCTCATCACGTGATTATAAAGTCTCAGCCTCAAACGCAGTGAAAGGTCTGAG 351
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 293 TAAGGAGATCTCATCACGTGATTATAAAGTATCAGCTTCAAACGCAGTGAAAGGTTTGAG 352
Query 352 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTC 411
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 353 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTC 412
Query 412 AACTTACACGGAGAAATACGCATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 471
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 413 AACTTACACGGAGAAATATGTATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 472
Query 472 TGTTGTGTTCCCCAATGGGAACAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACGT 531
|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 TGTTGTGTTCCCAAATGGTAACAAGAAGGATAGTGGTTCAGGGTACCTTTCTCTTTACGT 532
Query 532 AGCCATAGACAACTCAACTCTTGTCGCTGCACAGCAAGAGATCTACGCGGATCTAAGGTT 591
||||||||||||||||||||| || | |||||||||||| ||||| |||||||||||
Sbjct 533 AGCCATAGACAACTCAACTCT---CG--G-ACAGCAAGAGATTTACGCAGATCTAAGGTT 586
Query 592 TTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATGGAA 651
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 587 TTACATCTTTAACAAGAATGAGAGGAAGTACTTCACTATCCAAGATACCGATGTGTGGAA 646
Query 652 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCTCCATTGATACATTCAA 711
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 647 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCCCCATTGATACATTCAA 706
Query 712 AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGTTGATGTAAC 771
||| || | ||| ||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 707 AGATCCGACAAAAGGATATCTCTACGATGGAGATCACTGCGAGTTTGGTGTTGATGTAAC 766
Query 772 CATTCCTTCTCTTTATGAAAAATCGGAACTTTTCACTGTCACAGAGAATTTCCAAAATCC 831
||| |||||||| || |||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 767 CATGCCTTCTCTCTACGAAAAATCGGAACTTTTCTCTGTCACAGAGAATTTTCTAAATCC 826
Query 832 GAGATTCACTTGGACCATTCGGGGATTCTCTACGCTGCTAAAAGACACTTACCTATCAGA 891
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 827 GAGATTCACCTGGACCATTCGGGGATTCTCTACGCTGCTAAAAAACAGTTACCTATCAGA 886
Query 892 TGTGTTCACCATCGGAGGAAGAAGTTGGAATATACAAGTTAATCCAAGTGGTCGTGCCAC 951
|||||| ||||||||||||||||||||||||||||| | ||||||||||||| || ||
Sbjct 887 AGTGTTCTCCATCGGAGGAAGAAGTTGGAATATACAAATCAATCCAAGTGGTCTTGGTAC 946
Query 952 CGGAGAGGGAAAAGCCTTGTCGATGTATCTTAACCTTAATGTGAATGAGATATTTAGACC 1011
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 947 GGGAGAGGGAAAAGCTTTGTCGATGTATCTTGGCCTTAATGTGAATGAGATATTCAGACC 1006
Query 1012 ATATGAGAAGATTTATGTTCGAGCCAAATTTCGAGTTCTTAACCAACGCAATCTCAATAA 1071
||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||
Sbjct 1007 ATATGAGAAGATTTATGTTCGAGCCAAGCTTCGAGCTCTTAACCAACTCAATCTCAGTAA 1066
Query 1072 CGTCGAAAGGCCACTCGATATTTGGTACAATGGTCCGGGATATGGAGCAGAATATAGCTG 1131
| |||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1067 CATCGAAAGGGAACTCGATATTTGGTACAATGGTCCGGGATATGGAG-A-A-TATAGCTG 1123
Query 1132 GGGTTACCCTGAGTTTATCTCTCTCTCTGATCTCAGAGATGT-ATCAAAGGGTTTCGTTG 1190
||||| |||||||||||||| | || || |||||| |||| | ||||||||||||||||
Sbjct 1124 GGGTTTCCCTGAGTTTATCTATTTCCCTTATCTCACAGAT-TCATCAAAGGGTTTCGTTA 1182
Query 1191 TGAACGATATGTTGATGGTTCAAGTTGAAATGGAAGCCATTTCTTCAACCAAGTACTTTC 1250
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1183 AGAACGATGTGTTGATGGTTCAAGTTGAAATGGAGGCCATTTCTTCAACCAAGTACTTCC 1242
Query 1251 CTAGTTAGATTTT-TCCTA-GCCAAATAACTTG--C--ACCTCCATGTGTTTGATTTGTT 1304
| ||||||||||| || || || ||| |||||| | ||||||||||||||||||||||
Sbjct 1243 CGAGTTAGATTTTCTC-TAAGC-AAAGAACTTGTACCTACCTCCATGTGTTTGATTTGTT 1300
Query 1305 ATCAAATACCTACTAATAAGAATTTGCTTTTG-ATTTTCAAAT-CAATAAGTTTCTTTTT 1362
||||||||| || | |||||||||| || || |||| ||||| |||| ||||||||||
Sbjct 1301 ATCAAATAC-TA--A-TAAGAATTTGATTATGCATTT-CAAATACAATT-GTTTCTTTTT 1354
Query 1363 CTTCCGCATAGCAATATCAAATTATCAT 1390
|||| ||||| || ||||||||||||||
Sbjct 1355 CTTCAGCATATCATTATCAAATTATCAT 1382
> AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:7099771-7101636
REVERSE LENGTH=1320
Length=1320
Score = 368 bits (199), Expect = 7e-101
Identities = 506/649 (78%), Gaps = 41/649 (6%)
Strand=Plus/Plus
Query 297 AGATCTCATCACGTGATTA-TAAAGTCTCAGC-CTCAAACGCAGTGAAAGGTCTGAGAGA 354
|||| ||||||||||| || ||| || || | || | | | ||||| |||||||||||
Sbjct 178 AGATATCATCACGTGA-TAGTAAGGTTTC-TCTATCGAGCACGGTGAAGGGTCTGAGAGA 235
Query 355 TCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTCAAC 414
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 236 ACGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACACTCATGAAGTCTGT 295
Query 415 TTACACGGAGAAATACGCATCTCGTCCCTTTTCAGT-T-GGTGGATACAACTGGACACTT 472
|||||| |||| ||||| ||||||||| |||| || | ||| ||||||||||||| |||
Sbjct 296 TTACACTGAGAGATACGAATCTCGTCC-TTTT-AGGGTCGGTAGATACAACTGGACGCTT 353
Query 473 GTTGTGT-TCCCCAATGGGAA-CAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACG 530
||||||| ||| || ||||| |||||| ||| ||| ||||| || |||| || ||||
Sbjct 354 GTTGTGTATCCG-AA-GGGAAACAAGAACGATAACGGTACAGGGCACATTTCGCTATACG 411
Query 531 TAGCCATAGACAACTCAACTCTTGTCGCTGCACAGC-AAGAGAT-CTACGCGGATCTAAG 588
| | | |||||||||||||||| | || || || ||||| | | | | ||||| ||
Sbjct 412 TCGTCTTAGACAACTCAACTCTCACCTCT-CAAAGTGAAGAGGTTC-ATGTAGATCTCAG 469
Query 589 GTTTTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATG 648
|||||| | || |||||||| |||| ||||||||| || ||||||||||| ||||||||
Sbjct 470 ATTTTACGTATTCAACAAGAAAGAGACGAAGTACTTTACGATCCAAGATACTGATGTATG 529
Query 649 GAAGTTT-AGTGTCT-TCAAAACGA-TGTGGGGATTCTCTCAGGTCCTCTCCAT-TGAT- 703
| | || |||| | |||||| || |||||||||| ||| |||| || ||| | ||||
Sbjct 530 GC-GATTCAGTG-CAATCAAAA-GAATGTGGGGATTTTCTAAGGTTCT-TCC-TCTGATT 584
Query 704 ACATTCAA-AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGT 762
|| || || | ||| || ||| ||||||||||| || | || ||||| |||||||| ||
Sbjct 585 ACGTTTAACA-ACCTAAAAAATGGATACCTTTATGACGTTGACCATTGTGAGTTTGGCGT 643
Query 763 TGATGTAACCATTCCTTCTCTT-TATGAAAAATCGGAACTTTTCACTGTCAC-AGAGAAT 820
||| || | |||||| | || || |||||||||||| ||||| ||||||| | ||| |
Sbjct 644 TGACGTTATCATTCCACCA-TTCTACGAAAAATCGGAAGTTTTCTCTGTCACCA-AGAGT 701
Query 821 TT-CCAAAATCCGAGATTCACTTGG-ACCATTCGGGGATTCTCTACGCTGC-TAAAAGAC 877
|| || | ||||||||||| ||| | |||| |||| ||| || |||| || ||
Sbjct 702 TTTCCGAGC-CCGAGATTCACCTGGTAT-ATTCAAGGATACTCGACACTGCCTACT-GA- 757
Query 878 ACTTACCTATCAGATGTGTTCACCATCGGAGGAAGAAGTTGGAATATAC 926
|||||||||||| | ||||| ||||||||||| ||| |||||| |||
Sbjct 758 --TTACCTATCAGAGGAGTTCATCATCGGAGGAAAAAGCTGGAATTTAC 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5