BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479561 Length=1390 Score E Sequences producing significant alignments: (Bits) Value AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:71053... 1808 0.0 AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:70997... 368 7e-101 > AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:7105371-7107225 FORWARD LENGTH=1396 Length=1396 Score = 1808 bits (979), Expect = 0.0 Identities = 1273/1408 (90%), Gaps = 47/1408 (3%) Strand=Plus/Plus Query 1 GCATTATTAACTAAGCATGTATCTCCCACTAA-G-------TACTAACCATATAAGAGTA 52 |||||||||||||||||||||||||||||||| | |||||||||||| | ||| Sbjct 4 GCATTATTAACTAAGCATGTATCTCCCACTAAGGCACAAATTACTAACCATAT-A-AGTC 61 Query 53 ACAGTACTCTCAGTTCTGTACACTTCATTC-CAAAACCAACCTTAAGAGATGACGAGCCA 111 |||||||||| |||||| | ||||||| | |||||||||| |||||||||| ||||||| Sbjct 62 TCAGTACTCTCTGTTCTGCAAACTTCATACACAAAACCAACATTAAGAGATGGCGAGCCA 121 Query 112 CTCCAGAAACACAAGCTCTATTGCTTATCTCTTGCTTTGTTTCTTCATTACCTCTGCGAC 171 || ||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||| || Sbjct 122 CTACAGAAACACAAGCGCTATTGCTTATCTATTGCTTTGTCTCTTCATTACATCTGCCAC 181 Query 172 TGCACATTCCTTCATACGACAATTCACTGATGGGGACCTCAACACAAATCTGCAGCAAAC 231 |||||||||||||||||||||| |||||||| |||||||| |||||||||||| | Sbjct 182 TGCACATTCCTTCATACGACAAATCACTGAT---GACCTCAAAACAAATCTGCAG----C 234 Query 232 AGAGGAGGTAGGCGCAGAACCAATCCGAAACCTGGACGTAGGACATTACTTACAAGAAAA 291 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 235 --AGGAGGTAGGAGCAGAACCAATCCAAAACCTGGACGTAGGACATTACTTACAAGAAAA 292 Query 292 TAAGGAGATCTCATCACGTGATTATAAAGTCTCAGCCTCAAACGCAGTGAAAGGTCTGAG 351 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| Sbjct 293 TAAGGAGATCTCATCACGTGATTATAAAGTATCAGCTTCAAACGCAGTGAAAGGTTTGAG 352 Query 352 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTC 411 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 353 AGATCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTC 412 Query 412 AACTTACACGGAGAAATACGCATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 471 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 413 AACTTACACGGAGAAATATGTATCTCGTCCCTTTTCAGTTGGTGGATACAACTGGACACT 472 Query 472 TGTTGTGTTCCCCAATGGGAACAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACGT 531 |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 473 TGTTGTGTTCCCAAATGGTAACAAGAAGGATAGTGGTTCAGGGTACCTTTCTCTTTACGT 532 Query 532 AGCCATAGACAACTCAACTCTTGTCGCTGCACAGCAAGAGATCTACGCGGATCTAAGGTT 591 ||||||||||||||||||||| || | |||||||||||| ||||| ||||||||||| Sbjct 533 AGCCATAGACAACTCAACTCT---CG--G-ACAGCAAGAGATTTACGCAGATCTAAGGTT 586 Query 592 TTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATGGAA 651 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 587 TTACATCTTTAACAAGAATGAGAGGAAGTACTTCACTATCCAAGATACCGATGTGTGGAA 646 Query 652 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCTCCATTGATACATTCAA 711 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 647 GTTTAGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCCCCATTGATACATTCAA 706 Query 712 AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGTTGATGTAAC 771 ||| || | ||| ||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 707 AGATCCGACAAAAGGATATCTCTACGATGGAGATCACTGCGAGTTTGGTGTTGATGTAAC 766 Query 772 CATTCCTTCTCTTTATGAAAAATCGGAACTTTTCACTGTCACAGAGAATTTCCAAAATCC 831 ||| |||||||| || |||||||||||||||||| |||||||||||||||| | |||||| Sbjct 767 CATGCCTTCTCTCTACGAAAAATCGGAACTTTTCTCTGTCACAGAGAATTTTCTAAATCC 826 Query 832 GAGATTCACTTGGACCATTCGGGGATTCTCTACGCTGCTAAAAGACACTTACCTATCAGA 891 ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 827 GAGATTCACCTGGACCATTCGGGGATTCTCTACGCTGCTAAAAAACAGTTACCTATCAGA 886 Query 892 TGTGTTCACCATCGGAGGAAGAAGTTGGAATATACAAGTTAATCCAAGTGGTCGTGCCAC 951 |||||| ||||||||||||||||||||||||||||| | ||||||||||||| || || Sbjct 887 AGTGTTCTCCATCGGAGGAAGAAGTTGGAATATACAAATCAATCCAAGTGGTCTTGGTAC 946 Query 952 CGGAGAGGGAAAAGCCTTGTCGATGTATCTTAACCTTAATGTGAATGAGATATTTAGACC 1011 |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 947 GGGAGAGGGAAAAGCTTTGTCGATGTATCTTGGCCTTAATGTGAATGAGATATTCAGACC 1006 Query 1012 ATATGAGAAGATTTATGTTCGAGCCAAATTTCGAGTTCTTAACCAACGCAATCTCAATAA 1071 ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| Sbjct 1007 ATATGAGAAGATTTATGTTCGAGCCAAGCTTCGAGCTCTTAACCAACTCAATCTCAGTAA 1066 Query 1072 CGTCGAAAGGCCACTCGATATTTGGTACAATGGTCCGGGATATGGAGCAGAATATAGCTG 1131 | |||||||| ||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 1067 CATCGAAAGGGAACTCGATATTTGGTACAATGGTCCGGGATATGGAG-A-A-TATAGCTG 1123 Query 1132 GGGTTACCCTGAGTTTATCTCTCTCTCTGATCTCAGAGATGT-ATCAAAGGGTTTCGTTG 1190 ||||| |||||||||||||| | || || |||||| |||| | |||||||||||||||| Sbjct 1124 GGGTTTCCCTGAGTTTATCTATTTCCCTTATCTCACAGAT-TCATCAAAGGGTTTCGTTA 1182 Query 1191 TGAACGATATGTTGATGGTTCAAGTTGAAATGGAAGCCATTTCTTCAACCAAGTACTTTC 1250 ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1183 AGAACGATGTGTTGATGGTTCAAGTTGAAATGGAGGCCATTTCTTCAACCAAGTACTTCC 1242 Query 1251 CTAGTTAGATTTT-TCCTA-GCCAAATAACTTG--C--ACCTCCATGTGTTTGATTTGTT 1304 | ||||||||||| || || || ||| |||||| | |||||||||||||||||||||| Sbjct 1243 CGAGTTAGATTTTCTC-TAAGC-AAAGAACTTGTACCTACCTCCATGTGTTTGATTTGTT 1300 Query 1305 ATCAAATACCTACTAATAAGAATTTGCTTTTG-ATTTTCAAAT-CAATAAGTTTCTTTTT 1362 ||||||||| || | |||||||||| || || |||| ||||| |||| |||||||||| Sbjct 1301 ATCAAATAC-TA--A-TAAGAATTTGATTATGCATTT-CAAATACAATT-GTTTCTTTTT 1354 Query 1363 CTTCCGCATAGCAATATCAAATTATCAT 1390 |||| ||||| || |||||||||||||| Sbjct 1355 CTTCAGCATATCATTATCAAATTATCAT 1382 > AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:7099771-7101636 REVERSE LENGTH=1320 Length=1320 Score = 368 bits (199), Expect = 7e-101 Identities = 506/649 (78%), Gaps = 41/649 (6%) Strand=Plus/Plus Query 297 AGATCTCATCACGTGATTA-TAAAGTCTCAGC-CTCAAACGCAGTGAAAGGTCTGAGAGA 354 |||| ||||||||||| || ||| || || | || | | | ||||| ||||||||||| Sbjct 178 AGATATCATCACGTGA-TAGTAAGGTTTC-TCTATCGAGCACGGTGAAGGGTCTGAGAGA 235 Query 355 TCGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACATACTCCTTAAGTCAAC 414 ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| Sbjct 236 ACGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACACTCATGAAGTCTGT 295 Query 415 TTACACGGAGAAATACGCATCTCGTCCCTTTTCAGT-T-GGTGGATACAACTGGACACTT 472 |||||| |||| ||||| ||||||||| |||| || | ||| ||||||||||||| ||| Sbjct 296 TTACACTGAGAGATACGAATCTCGTCC-TTTT-AGGGTCGGTAGATACAACTGGACGCTT 353 Query 473 GTTGTGT-TCCCCAATGGGAA-CAAGAAGGATGGTGGTTCAGGGTACCTTTCTCTTTACG 530 ||||||| ||| || ||||| |||||| ||| ||| ||||| || |||| || |||| Sbjct 354 GTTGTGTATCCG-AA-GGGAAACAAGAACGATAACGGTACAGGGCACATTTCGCTATACG 411 Query 531 TAGCCATAGACAACTCAACTCTTGTCGCTGCACAGC-AAGAGAT-CTACGCGGATCTAAG 588 | | | |||||||||||||||| | || || || ||||| | | | | ||||| || Sbjct 412 TCGTCTTAGACAACTCAACTCTCACCTCT-CAAAGTGAAGAGGTTC-ATGTAGATCTCAG 469 Query 589 GTTTTACATCTTTAACAAGAACGAGAGGAAGTACTTCACTATCCAAGATACCGATGTATG 648 |||||| | || |||||||| |||| ||||||||| || ||||||||||| |||||||| Sbjct 470 ATTTTACGTATTCAACAAGAAAGAGACGAAGTACTTTACGATCCAAGATACTGATGTATG 529 Query 649 GAAGTTT-AGTGTCT-TCAAAACGA-TGTGGGGATTCTCTCAGGTCCTCTCCAT-TGAT- 703 | | || |||| | |||||| || |||||||||| ||| |||| || ||| | |||| Sbjct 530 GC-GATTCAGTG-CAATCAAAA-GAATGTGGGGATTTTCTAAGGTTCT-TCC-TCTGATT 584 Query 704 ACATTCAA-AGACCCAATAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGT 762 || || || | ||| || ||| ||||||||||| || | || ||||| |||||||| || Sbjct 585 ACGTTTAACA-ACCTAAAAAATGGATACCTTTATGACGTTGACCATTGTGAGTTTGGCGT 643 Query 763 TGATGTAACCATTCCTTCTCTT-TATGAAAAATCGGAACTTTTCACTGTCAC-AGAGAAT 820 ||| || | |||||| | || || |||||||||||| ||||| ||||||| | ||| | Sbjct 644 TGACGTTATCATTCCACCA-TTCTACGAAAAATCGGAAGTTTTCTCTGTCACCA-AGAGT 701 Query 821 TT-CCAAAATCCGAGATTCACTTGG-ACCATTCGGGGATTCTCTACGCTGC-TAAAAGAC 877 || || | ||||||||||| ||| | |||| |||| ||| || |||| || || Sbjct 702 TTTCCGAGC-CCGAGATTCACCTGGTAT-ATTCAAGGATACTCGACACTGCCTACT-GA- 757 Query 878 ACTTACCTATCAGATGTGTTCACCATCGGAGGAAGAAGTTGGAATATAC 926 |||||||||||| | ||||| ||||||||||| ||| |||||| ||| Sbjct 758 --TTACCTATCAGAGGAGTTCATCATCGGAGGAAAAAGCTGGAATTTAC 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68473543380 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5