BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479566
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein ... 1814 0.0
> AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein
2 | chr3:7119282-7120919 REVERSE LENGTH=1289
Length=1289
Score = 1814 bits (982), Expect = 0.0
Identities = 1146/1226 (93%), Gaps = 8/1226 (1%)
Strand=Plus/Plus
Query 1 GCGTCTCTTTAGATTCTCTCTACCATGGATCACTCTATCTCACCGGAGTACAATTTTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GCGTCTCTTTAGATTCTCTCTACCATGGATCACTCTATCTCACCGGAGTACAATTTCCCG 60
Query 61 GCGATCACTCGCTGTTA-CTTATCCAATTCACTTCCTCATCTTCCTCCATCAGCACCGCC 119
|| ||||||||||| || |||||||||||||||||||| | ||| |||||| ||| |||
Sbjct 61 GCCATCACTCGCTG-TAGTTTATCCAATTCACTTCCTCACCGTCCACCATCACCACTGCC 119
Query 120 GCCTTCAGCTGATATCCAACGCTTCTACAGTTCTTTTTCCCCATCAGCACCAAGCGTTCC 179
| |||| || |||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 120 GTCTTCGGCCGATATCCACCGCTTCTACAATTCTCTTTCCCCATCAGCACCAAGCGTTCC 179
Query 180 GGTTACGCCGGAGATGGAGTCTATGGAAGCATTGGAGAAGATTCTCAACTACAAATTCAA 239
|||| || ||||||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 180 GGTTTCGTCGGAGATGGAGTCTATGGAAGCAGTAGAGAAGATACTCAACTACAAATTC-A 238
Query 240 G-AACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCATGTACGGACTTTCCCTCTT 298
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 239 GTAACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCGTGTACAGACTTTCCTTCTT 298
Query 299 ACGAGAGGCTTGAGTTTGTAGGCGATAGTGCTATTGGTTTAGCTATCTCGAATTACTTAT 358
||||| |||| ||||| ||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 299 ACGAGCGGCTAGAGTTCATAGGCGATAGTGCTATTGGTTTAGCAATCTCAAATTACCTAT 358
Query 359 ACCTAACGTACCCTAGCCTTGAGCCTCACCAGTTGTCTCTGTTGAGAGCAGCTAATGTTA 418
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 359 ACCTAACGTACCCTAGCCTTGAGCCACACGACTTGTCTCTGTTGAGAGCAGCTAATGTTA 418
Query 419 GTACTGAGAAACTCGCTCGTGTCACTCTTAATCACGGTCTCTA-TCAGTTTCTTCGACGC 477
||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||
Sbjct 419 GTACTGAGAAACTCGCTCGTGTCTCTCTTAATCATGGTCTCTATTCA-TTTCTTCGACGC 477
Query 478 AATGCTCCTTCCTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGAT 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATGCTCCTTCTTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGAT 537
Query 538 GATTTTTCAGTGGCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTGGCTGATCTTTTT 597
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 GATTTGTCAGTGTCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTAGCTGATCTTTTT 597
Query 598 GAGTCTGTAGCTGGAGCTGTTTATGTTGATGTTAACTTTGATCTACAAAGACTATGGGTG 657
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 598 GAGTCTTTAGCTGGAGCTGTGTATGTTGATGTCAACTTTGATCTACAAAGACTATGGGTG 657
Query 658 ATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAA 717
Query 718 CCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAAT 777
Query 778 TGGAAAGATGGTAATATCAGTATTGCTGATATATATCTTGATGATGAGTTTTTGGCTTCA 837
||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 778 TGGAAAGATGGTAATGTCAGTATTGCTGTTATATATCTTGATGATGAGCTTTTGGCTTCA 837
Query 838 GGGCGTGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAGGAAGCGTTACGGAAG 897
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 GGCCGAGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAAGAAGCGTTACGGAAG 897
Query 898 TTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAGGATAGTGTAGAAATTGAACTT 957
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 898 TTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAAGATAGTGTAGAGATTCAACTT 957
Query 958 AAACATGCTAAAACAAAGTTGAATGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATC 1017
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 ACACATGCTAAAACGAAGTTGAACGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATC 1017
Query 1018 TACAGCATTGAGGAAGATAGAACCTCTGTACATGGAAAGAGATTTGTTTGTTCTGCTAAG 1077
|||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||
Sbjct 1018 TACAGCGTTGAGGAAGATAGAAGCTCGGTACAGGGAAAGAGATTTGTTTGCTCTGCTAAG 1077
Query 1078 ATTAAGATCCCA-ACAGGAGAAACTTTTTATATGAAGGGAGATGAACAGTCCAAGATCAA 1136
|||||||| || | || | |||| || ||||||||||||||||||||||||||||| ||
Sbjct 1078 ATTAAGATAACAGA-AGAAAAAACATTATATATGAAGGGAGATGAACAGTCCAAGATAAA 1136
Query 1137 GAAAGCAGAAAGCTCCTCAGCCTACCACATGATTAGAGCATTGAGAAAATCACATTATCT 1196
|||||||||||||||||| || || |||||||||||||| ||||||||||| ||||||||
Sbjct 1137 GAAAGCAGAAAGCTCCTCGGCGTATCACATGATTAGAGCCTTGAGAAAATCTCATTATCT 1196
Query 1197 CTAATTATCTTGTATCATTTGTAAAA 1222
||||| |||||||||||||||||||
Sbjct 1197 CTAATGGTCTTGTATCATTTGTAAAA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5