BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479566 Length=1222 Score E Sequences producing significant alignments: (Bits) Value AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein ... 1814 0.0 > AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 | chr3:7119282-7120919 REVERSE LENGTH=1289 Length=1289 Score = 1814 bits (982), Expect = 0.0 Identities = 1146/1226 (93%), Gaps = 8/1226 (1%) Strand=Plus/Plus Query 1 GCGTCTCTTTAGATTCTCTCTACCATGGATCACTCTATCTCACCGGAGTACAATTTTCCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GCGTCTCTTTAGATTCTCTCTACCATGGATCACTCTATCTCACCGGAGTACAATTTCCCG 60 Query 61 GCGATCACTCGCTGTTA-CTTATCCAATTCACTTCCTCATCTTCCTCCATCAGCACCGCC 119 || ||||||||||| || |||||||||||||||||||| | ||| |||||| ||| ||| Sbjct 61 GCCATCACTCGCTG-TAGTTTATCCAATTCACTTCCTCACCGTCCACCATCACCACTGCC 119 Query 120 GCCTTCAGCTGATATCCAACGCTTCTACAGTTCTTTTTCCCCATCAGCACCAAGCGTTCC 179 | |||| || |||||||| |||||||||| |||| ||||||||||||||||||||||||| Sbjct 120 GTCTTCGGCCGATATCCACCGCTTCTACAATTCTCTTTCCCCATCAGCACCAAGCGTTCC 179 Query 180 GGTTACGCCGGAGATGGAGTCTATGGAAGCATTGGAGAAGATTCTCAACTACAAATTCAA 239 |||| || ||||||||||||||||||||||| | |||||||| ||||||||||||||| | Sbjct 180 GGTTTCGTCGGAGATGGAGTCTATGGAAGCAGTAGAGAAGATACTCAACTACAAATTC-A 238 Query 240 G-AACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCATGTACGGACTTTCCCTCTT 298 | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 239 GTAACAAGAGTCTTCTCAAGGAAGCGATTACACACACCTCGTGTACAGACTTTCCTTCTT 298 Query 299 ACGAGAGGCTTGAGTTTGTAGGCGATAGTGCTATTGGTTTAGCTATCTCGAATTACTTAT 358 ||||| |||| ||||| ||||||||||||||||||||||||| ||||| |||||| ||| Sbjct 299 ACGAGCGGCTAGAGTTCATAGGCGATAGTGCTATTGGTTTAGCAATCTCAAATTACCTAT 358 Query 359 ACCTAACGTACCCTAGCCTTGAGCCTCACCAGTTGTCTCTGTTGAGAGCAGCTAATGTTA 418 ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 359 ACCTAACGTACCCTAGCCTTGAGCCACACGACTTGTCTCTGTTGAGAGCAGCTAATGTTA 418 Query 419 GTACTGAGAAACTCGCTCGTGTCACTCTTAATCACGGTCTCTA-TCAGTTTCTTCGACGC 477 ||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||| Sbjct 419 GTACTGAGAAACTCGCTCGTGTCTCTCTTAATCATGGTCTCTATTCA-TTTCTTCGACGC 477 Query 478 AATGCTCCTTCCTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGAT 537 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AATGCTCCTTCTTTAGATGAAAAGGTTAAAGAGTTCTCAGAGGCGGTGGGGAAAGAAGAT 537 Query 538 GATTTTTCAGTGGCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTGGCTGATCTTTTT 597 ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 538 GATTTGTCAGTGTCATATGGTGGATTAGTCAAAGCCCCTAAAGTTCTAGCTGATCTTTTT 597 Query 598 GAGTCTGTAGCTGGAGCTGTTTATGTTGATGTTAACTTTGATCTACAAAGACTATGGGTG 657 |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 598 GAGTCTTTAGCTGGAGCTGTGTATGTTGATGTCAACTTTGATCTACAAAGACTATGGGTG 657 Query 658 ATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATCTTTAGGGGTCTTTTGGAACCGATAGTTACATTGGACGATTTGCAGAAGCAACCTCAA 717 Query 718 CCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAAT 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CCTGTGTCTATGCTTTTTAAATTATGTCATAAACATAAGAAGCGAATCGACATCAAGAAT 777 Query 778 TGGAAAGATGGTAATATCAGTATTGCTGATATATATCTTGATGATGAGTTTTTGGCTTCA 837 ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 778 TGGAAAGATGGTAATGTCAGTATTGCTGTTATATATCTTGATGATGAGCTTTTGGCTTCA 837 Query 838 GGGCGTGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAGGAAGCGTTACGGAAG 897 || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 838 GGCCGAGCTGAGAATAAAGATATCGCAAGGCTGATCGCTGCTAAAGAAGCGTTACGGAAG 897 Query 898 TTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAGGATAGTGTAGAAATTGAACTT 957 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 898 TTGTCAGAAGTTTTTCCCGTTGAAATGGTTATTGATGAAGATAGTGTAGAGATTCAACTT 957 Query 958 AAACATGCTAAAACAAAGTTGAATGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATC 1017 | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 958 ACACATGCTAAAACGAAGTTGAACGAGATTTGCTTAAAGAAAAAGTGGCCTAAGCCTATC 1017 Query 1018 TACAGCATTGAGGAAGATAGAACCTCTGTACATGGAAAGAGATTTGTTTGTTCTGCTAAG 1077 |||||| ||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| Sbjct 1018 TACAGCGTTGAGGAAGATAGAAGCTCGGTACAGGGAAAGAGATTTGTTTGCTCTGCTAAG 1077 Query 1078 ATTAAGATCCCA-ACAGGAGAAACTTTTTATATGAAGGGAGATGAACAGTCCAAGATCAA 1136 |||||||| || | || | |||| || ||||||||||||||||||||||||||||| || Sbjct 1078 ATTAAGATAACAGA-AGAAAAAACATTATATATGAAGGGAGATGAACAGTCCAAGATAAA 1136 Query 1137 GAAAGCAGAAAGCTCCTCAGCCTACCACATGATTAGAGCATTGAGAAAATCACATTATCT 1196 |||||||||||||||||| || || |||||||||||||| ||||||||||| |||||||| Sbjct 1137 GAAAGCAGAAAGCTCCTCGGCGTATCACATGATTAGAGCCTTGAGAAAATCTCATTATCT 1196 Query 1197 CTAATTATCTTGTATCATTTGTAAAA 1222 ||||| ||||||||||||||||||| Sbjct 1197 CTAATGGTCTTGTATCATTTGTAAAA 1222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60039851820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5