BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479567

Length=778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20430.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Phosphory...   898    0.0  


> AT3G20430.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Phosphorylated 
adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); 
Has 110 Blast hits to 110 proteins in 51 species: 
Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants 
- 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI 
BLink). | chr3:7121102-7123173 FORWARD LENGTH=1041
Length=1041

 Score =  898 bits (486),  Expect = 0.0
 Identities = 548/577 (95%), Gaps = 8/577 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGGGAGAAGAGAGTTTGTTGGATGCTATTAATGAAGAAGACGGATTTGAAAACATG  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  145  ATGGAGGGAGAAGAGAGTTTGTTGGATGCTATAAATGAAGAAGACGGATTTGAAAACTTG  204

Query  61   GAGGATGTTGACATGGTTGATGTTGAAGAAGGGGAGATTGTTGTGGATCATGGCTTAGAT  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  205  GAGGATGTTGAAATGGTTGATGTTGAAGAAGGGGAGATTGTTGTGGATCATGATTTAGAT  264

Query  121  TCTGGAGAGAGACAAAATGGTGATGGTGATGGTGATGGAGTCAAAGATCAAGAAGG-GAT  179
            ||||||||||| |||||   |||   |||||||||||||||||||||| ||| ||| |||
Sbjct  265  TCTGGAGAGAGGCAAAA---TGA---TGATGGTGATGGAGTCAAAGATAAAG-AGGCGAT  317

Query  180  TTTGGGTGAGAAGAATGGACAGCAGCAGCCAAACaagaacaagaagaagaagaagaagaa  239
            |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||
Sbjct  318  TTTGGGTGAGAAGAATGGACTGCAACAGACAAACAAGAACAAGAGGAAGAAGAAGAAGAA  377

Query  240  aaagagaaaagGCCCTGTGATGGACAAACCCATGAGTGTAGACTGGTTTGTTAGGGATAC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  AAAGAGAAAAGGCCCTGTGATGGACAAACCCATGAGTGTAGACTGGTTTGTTAGGGATAC  437

Query  300  TTGTAGACGCCTCAAGGAAAAGAAGTCTTACATGGTATACACAGCTGTTGGGTGTCTTGG  359
            |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct  438  TTGTAGACGCCTTAAGGAGAAGAAGTCTTACATGATATACACAGCTGTTGGGTGTCTCGG  497

Query  360  AATTGCTGCCTTAAGTGATCTTGTCAATGAGGTGGTAGCAATTGAGACCTGTGGAGGTCA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  498  AATTGCTGCCTTAAGTGATCTTGTCAATGAGGTGGTAGCAATTGAGACCTGTGGAGGTCA  557

Query  420  GTTGACTGCTGATGGCAATAGGAAACGGTCAAGTGGTGGTGTATTGTGGAACATCATCAA  479
            | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct  558  GGTGACTGCTGATGGCACTAGGAAACGGACAAGTGGTGGTGTATTGTGGAACATCATCAA  617

Query  480  AGCGAGACAGCCTGCAGCTCATAGAGAGATAATGAAAAAGACCAAGGAGTTTGAGAAACA  539
            |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  618  AGCGAGACAGCCTGAAGCTTATAGAGAGATAATGAAAAAGACCAAGGAGTTTGAGAAACA  677

Query  540  ATTTAGGCAACCAAACACGAGACCGAAATCAGGGCCT  576
            |||||||||||||||||||||||| ||||||||||||
Sbjct  678  ATTTAGGCAACCAAACACGAGACCAAAATCAGGGCCT  714


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 94/97 (97%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  606  GGTAGCTGAGCAGACTGAATCCAAACCGGAAAAGGAAAGGAAATCTGTTCATGAGAGGAT  665
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  804  GGTAGCTGAGCAAACTGAATCCAAACCGGAAAAGGAAAGGAAATCTGTTCATGAGAGGAT  863

Query  666  CAGGGCACCTGTTTCATATGATGACCTTATCAGAGAT  702
            ||||| |||||||||||||||||||||| ||||||||
Sbjct  864  CAGGGTACCTGTTTCATATGATGACCTTTTCAGAGAT  900


 Score =  100 bits (54),  Expect = 2e-20
 Identities = 68/74 (92%), Gaps = 4/74 (5%)
 Strand=Plus/Plus

Query  706   ttttttt-ACTAGGTGAACAATATATCTAAGCTACTGGATAACTTCTTCTCTTGTGGAAA  764
             ||||||| ||||||| |||||||||||||||||||||||| |||||| || | |||||||
Sbjct  971   TTTTTTTAACTAGGTAAACAATATATCTAAGCTACTGGATGACTTCT-CT-T-GTGGAAA  1027

Query  765   GCAATTGTTTTGTC  778
             ||||||||||||||
Sbjct  1028  GCAATTGTTTTGTC  1041



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37826312691


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5