BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479569

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20450.1 | Symbols:  | B-cell receptor-associated protein 31...   719    0.0  


> AT3G20450.1 | Symbols:  | B-cell receptor-associated protein 
31-like  | chr3:7130627-7131274 REVERSE LENGTH=545
Length=545

 Score =  719 bits (389),  Expect = 0.0
 Identities = 430/450 (96%), Gaps = 1/450 (0%)
 Strand=Plus/Plus

Query  1    GATCCATTCTAAACTTCTCCATGTACTAA-CAAAAATGCTCGTAGAGATGTTTCAGCTTC  59
            |||||| ||||||||||||||||||||||  ||||||| |||||||||||||||| ||||
Sbjct  1    GATCCACTCTAAACTTCTCCATGTACTAATAAAAAATGTTCGTAGAGATGTTTCAACTTC  60

Query  60   TATTCACAATCGTGTCAATCGAAGCCGTCCTGATATTAACACTGGGGTTCGGGACTCCAG  119
            |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  61   TATTCACAATCGTGACAATCGAAGCCGTCCTGATATTAACACTCGGGTTCGGGACTCCAG  120

Query  120  CGAGAAGAGTGGTGGTGAAATTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG  179
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGAGAAGAGTGGTGGTGAAACTGCTAGACCTATCAAAGCAAGGTCGAGCACCACTGGTTG  180

Query  180  CGAAAACGGTCGCAGCCACAATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACGATTC  239
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  181  CGAAAACGGTCGCAGCCACTATGCTTGTGTTGTTTGGCTCGGTTATGTTCAGCACTATTC  240

Query  240  AAATACACACAAGGGTATCTGACTCTGGAGGTGTAGCTAACTCGACCGATCAAGTCATGT  299
            |||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  241  AAATCCACACAAGGGTCTCTGAATCTGGTGGTGTAGCTAACTCGACCGATCAAGTCATGT  300

Query  300  TTGCGAATTGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCAATGGTTA  359
            |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  301  TTGCCAATCGCCTCCTCGAAGCTTTCCTCATGGGGACTGTCTTGTTCTTGGCCATGGTTA  360

Query  360  TAGACAGAATGCATTATTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG  419
            |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TAGATAGAATGCATTACTACACAAGAGAGCTTCAAATCACAAGAAGAAACTTGGAGATTG  420

Query  420  CTGTAAATAAGGGCAAAACCGGTGCTTAAA  449
            ||||||| ||||||||||||||||||||||
Sbjct  421  CTGTAAAGAAGGGCAAAACCGGTGCTTAAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5