BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479571

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20470.1 | Symbols: GRP-5, ATGRP-5, GRP5, ATGRP5 | glycine-r...   891    0.0  


> AT3G20470.1 | Symbols: GRP-5, ATGRP-5, GRP5, ATGRP5 | glycine-rich 
protein 5 | chr3:7140440-7141228 REVERSE LENGTH=789
Length=789

 Score =  891 bits (482),  Expect = 0.0
 Identities = 540/567 (95%), Gaps = 8/567 (1%)
 Strand=Plus/Plus

Query  1    ATCATCACATACACAAAACACAAAGATCGATCGACATGGCTTCCAAGTCACTCTTTCTTG  60
            |||||||||||| ||||||||||| |   |||||||||||||||||||||||||||||||
Sbjct  49   ATCATCACATACGCAAAACACAAA-A---ATCGACATGGCTTCCAAGTCACTCTTTCTTG  104

Query  61   TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  105  TTGCCTTACTTGTCGGCTCTTTTGCTTTCACTTCATTTGCCAGTGTCGCTAACAGGAAGC  164

Query  121  TAAAGAGTGGTCTCGAGGACCAAAAGACTTTCTTCCACCATCCaggcggtggtcttggtg  180
            | |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct  165  TGAAGAGTGGTCTCGAGGACCAAAAGACATTCTTCCACCATCCAGGCGGAGGTCTCGGTG  224

Query  181  gaggaggcggtcttggtggagg-aggcggtcttggtggaggtggcggccttggtggagga  239
            ||||||||||| |||||||||| ||  |||||||||||||| |||||| |||||||||||
Sbjct  225  GAGGAGGCGGTATTGGTGGAGGCAGT-GGTCTTGGTGGAGGAGGCGGCTTTGGTGGAGGA  283

Query  240  ggcggtcttggcggaggagctggaggcggtggcggtttaggaggaggagctggtggtgga  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  GGCGGTCTTGGCGGAGGAGCTGGAGGCGGTGGCGGTTTAGGAGGAGGAGCTGGTGGTGGA  343

Query  300  gctggaggaggatttggtggaggagctgg-aggcggtggtggtcttggtgggggtggtgg  358
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  344  GCTGGAGGAGGATTTGGTGGAGGAGCTGGGAG-CGGTGGTGGTCTTGGTGGGGGTGGTGG  402

Query  359  tgccggtggaggatttggcggtggtgctggtggtggttcaggtggagggtttggaggagg  418
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  403  TGCTGGTGGAGGATTTGGCGGTGGGGCTGGTGGTGGTTCAGGTGGAGGGTTTGGAGGAGG  462

Query  419  agctggtgctgggggtggactcggaggaggaggtggagctggtggtggtggtgggtttgg  478
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  463  AGCTGGTGCTGGGGGTGGACTCGGAGGAGGAGGTGGAGCTGGTGGCGGTGGTGGGTTTGG  522

Query  479  aggaggaggtggaagtggtatcggtggtggattcggtggtggagccggtgctggaggtgg  538
            ||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct  523  AGGAGGAGGCGGAAGCGGTATTGGTGGTGGTTTCGGTGGGGGAGCCGGTGCCGGAGGTGG  582

Query  539  tttcggcggtggaCATCATTGATGAGA  565
            |||||| ||||||||||||||||||||
Sbjct  583  TTTCGGTGGTGGACATCATTGATGAGA  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5