BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479573
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20480.1 | Symbols: | tetraacyldisaccharide 4'-kinase famil... 1881 0.0
> AT3G20480.1 | Symbols: | tetraacyldisaccharide 4'-kinase family
protein | chr3:7151424-7153392 REVERSE LENGTH=1284
Length=1284
Score = 1881 bits (1018), Expect = 0.0
Identities = 1181/1262 (94%), Gaps = 2/1262 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCTGAGGAAGGTGGTGAACGAAATCGCCTACACGCGAGTCCATACTACTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 24 ATGGAGAAGCTGAGGAAGGTGGTGAACGAAATCGCCTACACGCGAGTCCATACGAATTCC 83
Query 61 CCTGCACTTCATCGCTCTCTCGTTCCCATCCTCACACTCGCTTCTTCTCTATACTCCGGC 120
||||| ||||| || |||||||||||| |||| ||| ||||||| ||||||||| | |
Sbjct 84 CCTGCTCTTCACCGTTCTCTCGTTCCCTTCCTAACAATCGCTTCGTCTCTATACGGAGTC 143
Query 121 GCTCTCCAAATCCGCCGCTCTCTCTACCGCTTCTCACTCTTGCAGAAAGACCGATTACCG 180
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 144 GCTCTCCAAATCCGCCGCTCTCTCTACCGCTACTCACTCTTACAGAAACACCGATTACCC 203
Query 181 GTTCCGGTGATCAGCGTTGGGAATCTGAGCTGGGGAGGTAACGGGAAGACGCCAATGGTG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 204 GTTCCGGTGATCAGCGTTGGGAATCTGAGCTGGGGAGGTAATGGGAAGACGCCAATGGTG 263
Query 241 GAATACATTTCTCAATTCCTCGTTGATTCTGGAATTTCACCTCTTATTCTCACTCGTGGT 300
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 264 GAATACATTTCTCAATTCCTCGTTGATTCTGGACTTACACCTCTTATTCTCACTCGTGGT 323
Query 301 TATGCTGGTGGAGATGAAGCCAAAATGCTTGCAAGACATCTTCGTGGTGGACCGGTAAAG 360
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 324 TATGCTGGTGGAGATGAAGTCAAAATGCTTGAAAGACATCTTCGTGGTGGACCGGTAAAG 383
Query 361 ATTGGTGTTGGTGCAAACCGGGCAGCTACTGCTGCTTTGTTTTTGGAAAAGTATGGTTGT 420
||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 384 ATTGGCGTTGGGGCTAACCGGGCAGCTACTGCTGCTTTGTTTTTGGATAAGTATGGTTGT 443
Query 421 GTAGATCCTTCTACTTTAAGGACATTCTTTGATCTTCATGAAAGAGCAGAAGCCAGGACC 480
|||||| |||||| ||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 444 GTAGATTCTTCTAGTTTAAGGTCATTCTTTGATCTTCATGAAAGAGCACAAGTTTGGACC 503
Query 481 ATTTCTCAAAAAATTGGTTCTATCAT-TCTAGATGATGGGATGCAGCATTTGAGTTTGTC 539
|||||| |||||||||||| |||||| | ||||||||||||||||||||| |||||||||
Sbjct 504 ATTTCTGAAAAAATTGGTTGTATCATAT-TAGATGATGGGATGCAGCATTGGAGTTTGTC 562
Query 540 TCGTGATCTAGAGATTGTGATGCTTAACGGGCTGAATCCGTGGGGAAATGGTCATTTGGT 599
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 563 TCGTGATCTCGAGATTGTGATGCTTAACGGGCTGAATCCATGGGGAAATGGTCATTTGAT 622
Query 600 TCCCCTTGGTCCTTTACGAGAATCTCTTGTGGCGCTTGAGCGGGTAGATATTGCTGTAGT 659
|| | |||||||||||||||| ||||| |||||||||| |||| |||| ||||||||||
Sbjct 623 GCCTCATGGTCCTTTACGAGAACCTCTTCTGGCGCTTGAACGGGCAGATGTTGCTGTAGT 682
Query 660 ACACCACGTGGACTTGATTACTAAACAAAGTCTCAGAGATATTGAGAACATGATACAAAG 719
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 683 ACACCATGTGGACTTGATTACTAAACAAAGCCTCAGAGATATTGAGAACATGATACAAGG 742
Query 720 ATTCAAAAAGTCGATCCCGATTTTCTACTCCAAGATGGTGCCAAAATACTTGTTCGATGT 779
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 743 ATTCAAAAAGTCGATACCGATTTTCTACTCCAAGATGGTGCCCAAATACTTGTTCGATGT 802
Query 780 TAAAAATGCTAGGTCACATGTAGCTTTAGAAGCATTGCGCTGTGCCTCTGTGCTATGTGT 839
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 803 TAAAAATGCTAGGTCACATGTAGCTTTAGAAGCGTTGCGCTGTGCCTCTGTGCTATGTGT 862
Query 840 TTCCGCAATTGGATCTGCTGACGCATTCGTCAAGAGCATCGAGATGACTGGAGCACATTA 899
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 863 TTCCGCAATTGGATCCGCTGATGCATTTGTCAAGAGCATCGAGATGACTGGAGCACATTA 922
Query 900 TGTTGATAGACTTGATTTCAGTGATCATCATTTGTTTGAAGCACAGGATGTCGAAACTAT 959
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 923 TGTTGATAGACTTGATTTCAGTGATCATCATTTATTTGAAGCAGAGGATGTTGAAACTAT 982
Query 960 GAGGAGGAGAGCAAATGGACTAGAGCACAAATCTAATTCCAAGCCTATCATTGTGGTAAC 1019
||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 983 GAGTAGGAGAGCAAAGGGACTAGAACACAAATCTAATTGCAAGCCTATCATTGTGGTAAC 1042
Query 1020 TGAAAAGGATTATGATAGAGACCCCGAGATCCTCAAATGTCTGGACTCATACACAGTCTT 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1043 TGAAAAGGATTATGATAGAGACCCGGAGATCCTCAAATGTCTGGACTCATACACAGTCTT 1102
Query 1080 AGTGCTATGCTCTGAGTTGCAAATAACTCCTATTAGGGGAACTGATGTGGATAGCTTTAA 1139
|| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1103 GGTTCTATGCTCTGAGTTGCAAATAACTCCTATTTTGGAAACTGATGTAGATAGCTTTAA 1162
Query 1140 TTCTACACTTATGAGAGCTCTAGCTGCTAAGTTTTATGTTTACAGTTAGATTCAAGGtta 1199
|| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1163 TTATACACTTATGAAAGCTCTAGCTGCTAAGTTCTATGTTTCCAGTTAGATTCAAGGTTA 1222
Query 1200 tattattgcattttgttattgttttattactcttaggaatttgatgatgtatttatttta 1259
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1223 TCTTTTTGCATTTTGTTATTGTTTTATTACTCTTAGGAATATGATGATGCATTTATATTA 1282
Query 1260 tt 1261
||
Sbjct 1283 TT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5