BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479575
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20500.1 | Symbols: ATPAP18, PAP18 | purple acid phosphatase... 1016 0.0
> AT3G20500.1 | Symbols: ATPAP18, PAP18 | purple acid phosphatase
18 | chr3:7157906-7160417 FORWARD LENGTH=1507
Length=1507
Score = 1016 bits (550), Expect = 0.0
Identities = 641/682 (94%), Gaps = 18/682 (3%)
Strand=Plus/Plus
Query 626 GGCTGATCTCTCAAAGGTGGACCGAGAAAGAACTCCATGGCTAATAGTCCTCTTCCATGT 685
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 GGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCTAATAGTCCTCTTCCATGT 895
Query 686 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAGATGATGGCTGAAAT 745
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 ACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAAATGATGGCTGAAAT 955
Query 746 GGAGCCTTTGCTTTATGCAAGCGGTGTTGATATCGTATTTACTGGTCATGTCCATGCTTA 805
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 956 GGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATTTACTGGTCATGTCCATGCTTA 1015
Query 806 TGAGCGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCGGTACACATAAC 865
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1016 TGAACGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCCGTACACATTAC 1075
Query 866 CATAGGCGATGGAGGAAACAGAGAAGGGCTGGCTCGCAAGTACAAAGATCCGTCGCCAGA 925
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1076 CATAGGTGATGGAGGAAACAGAGAAGGATTGGCTCGCAAGTACAAAGATCCGTCACCAGA 1135
Query 926 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGCGAGCTTCAGATGGTGAACTCAAC 985
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1136 GTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGGGAGCTTCAGATGGTGAATTCAAC 1195
Query 986 CCATGCGCTTTGGACCTGGCATAGGAACGATGATGACGAGCCAACAAGGTCTGATGAAGT 1045
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 ACATGCGCTATGGACCTGGCATAGGAACGATGATGACGAACCAACAAGGTCTGATGAAGT 1255
Query 1046 TTGGTTAAACTCTCTTGTGAACTCGGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1256 TTGGTTAAACTCTCTTGTGAACTCCGGATGCTTGAAGAAAAGGCCTCAAGAACTCAGGAA 1315
Query 1106 AATGCTCTTGGAACCTTAATTATATAATCCATAAAGTGAGA-TTTGCAGTAAAATAGTCC 1164
||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 1316 AATGCTCTTGGAACCTTAATTATAT---CCATAAAGTGAGAATTT-CAGTAAAATAGTCC 1371
Query 1165 ATTAAGTAAGTCTATATAGAAAGCTACAAGCTTGT--TGT-GTTAGCAATGGGACTCTTA 1221
||||| | | ||| |||| |||||||||||| ||| |||||||||||||||||||
Sbjct 1372 ATTAA--A--T--ATA--GAAATCTACAAGCTTGTAATGTTGTTAGCAATGGGACTCTTA 1423
Query 1222 ATCACACCATTGAAGAAGAATTCCACCAACTCCATAGAAAAATCTTAGTTCCAACTTTAA 1281
||||||||||||||||||| || ||||||||| ||||||| || |||||||||||||||
Sbjct 1424 ATCACACCATTGAAGAAGATTTTCACCAACTCTATAGAAA--TCATAGTTCCAACTTTAA 1481
Query 1282 AATTTTGTAAACTTGCACTTTG 1303
||||||||||||||||||||||
Sbjct 1482 AATTTTGTAAACTTGCACTTTG 1503
Score = 907 bits (491), Expect = 0.0
Identities = 587/634 (93%), Gaps = 4/634 (1%)
Strand=Plus/Plus
Query 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGAAGATTGCTGCTCGTAACAGTATC-- 58
|||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||
Sbjct 1 GAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGGATTTTGCTACTCGTAACATTATCAG 60
Query 59 TG-CGTTAATCTTTGCTTCTGTGGCGGCAGATGATTACGTCAGACCAAAACCTCGTGAAG 117
|| | |||||||| |||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 61 TGTCAATAATCTTTACTTCTGCGGCCGCAGATGATTACGTCCGACCAAAACCTCGTGAAA 120
Query 118 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTTTACCCGAGCAGGTGCATATCTCAT 177
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCTTGCAGTTTCCATGGAAACAAAAGTCCTCTTCTGTACCCGAGCAGGTGCATATCTCAT 180
Query 178 TGGCTGGAGATAAACATATGCGGGTCACTTGGGTTACGAGTGACAAATCATCTCCTTCGT 237
|||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||| |
Sbjct 181 TGGCTGGAGATAAACATATGCGAGTTACTTGGGTTACGAATGACAAATCGTCTCCTTCAT 240
Query 238 TTGTTGAATATGGAACATCGCCAGGGAAATACTCCTATCTCGGTCAAGGAGAAAGCACCT 297
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 241 TTGTTGAATATGGAACATCGCCAGGGAAATACTCTTATCTTGGTCAAGGAGAAAGCACCT 300
Query 298 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATCGGGCCATTGG 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATTGGGCCATTGG 360
Query 358 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAAAAGGGCCCGAGTTCCATCTGAAAA 417
||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||
Sbjct 361 AAGCGGATACTGTTTATTATTACCGTTGTGGTGGAGAAGGACCTGAGTTCCATTTGAAAA 420
Query 418 CACCGCCAGCTCAGTTTCCAATTACTTTTGCAGTGGCTGGGGATCTTGGGCAAACTGGTT 477
|||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 421 CACCACCAGCTCAGTTCCCGATTACTTTTGCAGTGGCGGGGGATCTTGGACAAACCGGTT 480
Query 478 GGACTAAGTCGACTCTAGATCATATCGATCAGTGCAAATACGCTGTGCATCTACTTCCTG 537
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 481 GGACTAAGTCGACTCTAGATCATATTGATCAATGCAAATATGCTGTGCATCTACTTCCAG 540
Query 538 GGGATCTTTCTTATGCTGACTATATGCAGCATAAGTGGGACACGTTTGGAGAGCTGGTTC 597
||||||| || ||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 541 GGGATCTATCGTATGCGGACTATATGCAGCATAAGTGGGACACGTTTGGGGAACTAGTTC 600
Query 598 AGCCTCTGGCTAGTGTAAGGCCATGGATGGCTGA 631
|||||||||| ||||||||||| ||||||| |||
Sbjct 601 AGCCTCTGGCAAGTGTAAGGCCGTGGATGG-TGA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5