BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479576
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:716... 1288 0.0
> AT3G20510.1 | Symbols: | Transmembrane proteins 14C | chr3:7160677-7162206
FORWARD LENGTH=782
Length=782
Score = 1288 bits (697), Expect = 0.0
Identities = 756/783 (97%), Gaps = 9/783 (1%)
Strand=Plus/Plus
Query 1 AAAAATGATGGACCGTAAGTGGAGGATTAGTTGTCTGAAGACCGTTGACGaaaaaaaGGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2 AAAAATGATGGACCGTAAGTGGAGGATTAGTTGTCTGAAGACCGTTGACG-AAAAAAGGC 60
Query 61 GGACCTTTTCCACGCGCTCACCACACAACACTTTCAT-ATATCAATTCATCGATCCATCG 119
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 GGACCTTTTCCACGCGCTCACCACACAACACTTTCATAAAATCAATTCATCGATCCATCG 120
Query 120 TCTCTTTCAGATCAA-TC--CGATTACGATCGCTC-TTGAACTTTCATCATCACCGGAGA 175
||||| ||||||||| || ||||| ||||||||| || || |||| |||||||||| ||
Sbjct 121 TCTCTATCAGATCAATTCATCGATTGCGATCGCTCTTTCAATTTTCTTCATCACCGGTGA 180
Query 176 AAATAATCCAAACCCAGCTA-GAGAAAAATGCATGATTTTTGCTTCACTATCCCGTACGG 234
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAATAATCGAAACCCAGC-ACGAGAAAAATGCATGATTTTTGCTTCACTATCCCGTACGG 239
Query 235 GATGCTTCTCATCGGCGGAGGATTTATCGGGTACATGAAGAAAGGAAGTATTACATCTTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GATGCTTCTCATCGGCGGAGGATTTATCGGGTACATGAAGAAAGGAAGTATAACATCTTT 299
Query 295 CGCCGGAGGTGCAGGCACTGGGTTATTACTCATTCTCGCTGGTTATATCAGTCTCAAAGC 354
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCCGGAGGTGCAGGCACTGGATTATTACTCATTCTCGCTGGTTATATCAGTCTCAAAGC 359
Query 355 TTTTGAGAAGAAGAAGAATTCCTCTATTGCTATGGTTCTTCAGACAGTCATCGCAGCTGC 414
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTGAGAAGAAGAAGAATTCCACTATTGCTATGGTTCTTCAGACAGTCATCGCAGCTGC 419
Query 415 TCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTATGCCGGCTGGTTT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTATGCCGGCTGGTTT 479
Query 475 GGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTGTACAAGATCGCTACTGGTGG 534
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGATCGCTACTGGTGG 539
Query 535 CAATAAATTCCCAGCAAAAGCTGAATGATGGTTCTGCTACATGCAGATGATACTATCCGT 594
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAATAAATTTCCAGCAAAAGCTGAATGATGGTTCTGCTACATGCAGATGATACTATCCGT 599
Query 595 TGTTGAATTTGTCGATTAGAATTCTATTTGGTGTACACAATGCTGCTGTCATAACGCCTT 654
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 600 TGTTGAATTTGTCGATTAGAATTCTTTTTGGTGTACACAATGCGGTTGTCATAACGCCTT 659
Query 655 AATAGCTTGTATTAGTCACAGAACTGCATATGGTCTTGTGTTTTCTTGTCATCGTGTTTT 714
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATAGCTTGTATTAGTCAAAGAACTGCATATGGTCTTGTGTTTTCTTGTCATCGTGTTTT 719
Query 715 TGTAACCACAAACTGTTTTGAGCAATACTACTATATATAT-GAGATATATCTGCCGTTTC 773
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 720 TGTAACCACAAACTGTTTTGAGCTATACTACTATATATATTGAGATATATCTGCCGTTTC 779
Query 774 GAT 776
|||
Sbjct 780 GAT 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5