BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479577
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-716585... 3386 0.0
> AT3G20520.1 | Symbols: SVL3 | SHV3-like 3 | chr3:7162828-7165859
FORWARD LENGTH=2324
Length=2324
Score = 3386 bits (1833), Expect = 0.0
Identities = 2177/2339 (93%), Gaps = 40/2339 (2%)
Strand=Plus/Plus
Query 1 GAAAGCTCTCCACTACCATGGCGTGCCCTAGATTGATTTTTCTGATTCTGATCAAGTTCT 60
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 1 GAAAGCTCTCCACTACCATGGCGTGTCCTAGAGTGATTTTTCTGATTCTGATCACGTTCT 60
Query 61 TCATTTTACAGACTGCTTTATCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTTTACAGACTGCTTTCTCAAGTTCTTGGCAAACATTGAGTGGGAAACCTCCGGCTG 120
Query 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTAGTCAAGCATATCAGT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TGATTGCTCGAGGCGGATTCTCTGGTATGTTTCCAGATTCCAGTATTCAAGCATATCAGT 180
Query 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGAATATAACAACTTCACCAGACGTAATGCTCTGGTGTGATCTTCAACTAACAAAGG 240
Query 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAATCTTGATAACGGTTCTGATGTAATGACCA 300
||||||||||||||||||||||||||||||| ||||| || |||||| | || || | |
Sbjct 241 ATGGTGTTGGAATCTGCTTTCCAAATCTGAAGCTTGACAATGGTTCTAACGTCATAAGAA 300
Query 301 TTTACCCAAATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTATCTGATG 360
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 TTGACCCACATTACAAAGAAAGGTTTTCTGTTGATTTCACATGGAAGGAACTCTCTGATG 360
Query 361 TGAAATTGGCCCGGGGTGTTCTCTCGAGACCAAATATATTTGATGATCTTTCCTCGATAT 420
|||||||||| | ||||||| |||| |||||| ||||||| |||||| | ||||||||||
Sbjct 361 TGAAATTGGCACAGGGTGTTGTCTCAAGACCATATATATTCGATGATGTATCCTCGATAT 420
Query 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCCTCAGGCCTCTGGTTAAACATTCAGGACA 480
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 421 TGGCTATTGAAGAAGTAGCAAAGTTGACAGCTTCAGGCCTCTGGTTGAACATTCAGGACA 480
Query 481 GTGCTTTCTACGCGCAACACAATTTGAGTATGAGAAACTCTGTTCTCTCTCTATCAAGAC 540
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GTGCTTTCTACGCAAAACACAATTTGAGTATGAGAAACTCTGTTGTCTCTCTATCAAGAC 540
Query 541 TCCTGAAAGTTAACTTCATATCTTCACCAGAGATCAGTTTCCTGAAGAGCATGAAAAACA 600
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 541 GCCTGAAAGTTAACTTCATATCTTCTCCAGGGATCAGTTTCCTGAAGAGCATGAAAAACA 600
Query 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGACCACATAGAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 GTGTCAAGCCGACTGTGACAAAACTCATCTTTAGGTTTCTGAAACAAGAACACATAGAAC 660
Query 661 CCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTTCACCAACCAATCTTACGGCTCTCTTGCCAAGAATCTAAGTTATATAAGAACGTTTT 720
Query 721 CTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCATAGATTCAGCTCTTTACCTAC 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CTTCTGGAATTCTTGTTCCAAAATCTTACATATGGCCCGTAGATTCAGCTCTTTACCTAC 780
Query 781 AACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGTTTACAAGTTTTCGCCTCGG 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 AACCCCACACGTCGCTTGTAACAGATGCTCATAAAGAAGGCTTACAAGTTTTCGCCTCGG 840
Query 841 AGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTATT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTTGCCAATGATTTTGTAATTGCTTATAACTACAGCTATGATCCAACGGCTGAGTATC 900
Query 901 TATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCATATCAGACTCCCCGGTGA 960
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 901 TATCTTTCATTGACAACGGAAACTTCTCCGTTGATGGTTTCCTATCAGACTTCCCGGTGA 960
Query 961 CTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGACACC-AAAAGAGCTAAGGAGCAA 1019
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 961 CTCCATATCGAGCCATCAATTGCTTCTCTCATGTGGAC-CCTAAAAGAGCTAAGGAGCAA 1019
Query 1020 GCTAAGATAACTATTCTCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTGAC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTAAGATAACTATTATCTCGAAGAATGGAGCGAGTGGAGATTTCCCGGGCTGTACTGAC 1079
Query 1080 TTGGCGTATGAGAGAGCTGCAAGCGACGGGGCAGACATTCTTGATTGCAATGTCCAGATG 1139
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1080 TTGGCGTATCAGAGAGCTGCAAGCGACGGGGCTGATATTCTTGATTGCAATGTCCAGATG 1139
Query 1140 TCTAAAGACAAGATTCCTTTTTGTATGAGCTCCATTGATCTTATAAACAGCACTAATGTT 1199
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 TCTAAAGACAAGATTCCCTTTTGTATGAGCTCCTTTGATCTTATAAACAGCACTAATGTC 1199
Query 1200 ATTGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATTCAACC---G-AGAAG 1255
|| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 1200 ATCGAAACAAGCTTCAGAAATCTGTCATCAGTAGTTTCAGAGATT-AACCCACGGAGAAG 1258
Query 1256 TGGGATCTACAGTTTCAGCCTGACCATGTCTCAGATACAAACCTTGAAGCGTAAGAGCAC 1315
||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1259 TGGTATCTACACTTTTAGCCTGACCATGTCTCAGATACAAACCTTGAAGCC------CAC 1312
Query 1316 TATTTCGAATCCTGAAAGGGACTGGGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGG 1375
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1313 TATTTCGAATCTTGAAAAGGACTCTGGTTTATTCAGAAACCCAAGAAACAACAAGGCTGG 1372
Query 1376 GAAGTTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCATTACAGCTCTCTCTTAGG 1435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1373 GAAGTTTCTTACATTATCCGAGTTCTTGTTTCTTCCAAACCGTTACAGCTCTCTCTTAGG 1432
Query 1436 CATCTTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGT 1495
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CCTCTTGATAGAAGTGGAGAATGCAGCTTATTTAGTGGAACATCAAGGAATTAGCGTGGT 1492
Query 1496 CGATGCGGTACTAGATGAATTGAAGAGAGCTAATAATAATCAGCAAAACAAGACAAGTGC 1555
|||||||||||||||||||||||||||||||| || | | | |||||||||||||||||
Sbjct 1493 CGATGCGGTACTAGATGAATTGAAGAGAGCTACTACTCA--A-CAAAACAAGACAAGTGC 1549
Query 1556 AAGAACAATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AAGAACAATACTGATCCAGTCTACTGATAAGTCTGTCTTGATGAAGTTCAAGGAGAAGAA 1609
Query 1616 CAAAATGAATCATGATGAGCTAGTCTATAGAGTCGATAA-AGACATCCGTGATGTAGAAG 1674
||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||| ||
Sbjct 1610 CAAAATGAATCATGACGAGCTGGTCTATAGAGTCGACGACA-ACATCCGTGATGTAGCAG 1668
Query 1675 ATTCTGC-AGTCAGGGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGGAAGAACTCA 1733
|||| || | ||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1669 ATTCGGCGA-TCAAAGACATCAAGAATTTCGCAGGCTCGATTGTCATCAGTAAGAAATCA 1727
Query 1734 GTCTTTCCTTACAAAGGGTTTTTCATCTTT-AAGAAGGGGCCAAATGTTGTTTCAAAGCT 1792
|||||||| |||||||||||| ||||| || || |||| | ||||| ||| |||||||||
Sbjct 1728 GTCTTTCCCTACAAAGGGTTTATCATCCTTGAA-AAGGAGACAAATATTGCTTCAAAGCT 1786
Query 1793 AAAATCAAGCGGGCTTCGTGTTTACGTAGAAACATTTAGCAATGAGTTTGTAACTCAAGA 1852
|||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| |
Sbjct 1787 AAAATCAAACGGGCTTCGTGTTTACGTTGAAAGATTTAGCAACGAGTGTGTAACTCATGC 1846
Query 1853 ATATGATTTTTACGAGGATCCAACGTTGGAGATAGACTGTTTTGTCCGGGATATCCAAGT 1912
|| ||| |||||||| ||||||||||| |||||||||| ||||||||| ||| ||||| |
Sbjct 1847 ATTTGACTTTTACGATGATCCAACGTTAGAGATAGACTCTTTTGTCCGCGATGTCCAAAT 1906
Query 1913 TGATGGCATTATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACCAGTGTTA 1972
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1907 TGATGGCATCATCACTGACTTCCCAGCAACCACTGCAAGATACAGAAAGAACAAGTGTTA 1966
Query 1973 CGGCAAATTTGATCTGCCTGA-AACCGGTGAGCTCAGAACTTTGGGGAATCCAATGATT- 2030
|||| |||||| |||| || | |||||||||||||| |||||| | |||||||||| ||
Sbjct 1967 CGGCGAATTTGGTCTGACT-ACAACCGGTGAGCTCATAACTTTCGCGAATCCAATGCTTC 2025
Query 2031 TTGGCTCCAGCCGAAGCTCCATATCCATTACTACGT-ATCTCAGATGTCTCGGAACCTCC 2089
|| | ||||| ||||||||||||||| ||||| | | ||||||||| ||||||| ||
Sbjct 2026 TTC-CACCAGCTGAAGCTCCATATCCAGCACTACTTGA-CTCAGATGTGACGGAACCACC 2083
Query 2090 ATTGCCTGAAGTAAGAAGTCAGACTCCTGCTTCTTCACCATCAAAGGCAGAGGAAAAAGC 2149
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2084 ATTGCCTGAAGCAAGAAGTCAGCCTCCTGCTTCTTCTCCATCAAAGGCAGAGGAAAAAGC 2143
Query 2150 AATAGAAGTTCCCTTTGCATTTATAGCCATGGCCATTCTTGTGAGCTTCTTTATTTCAGT 2209
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 2144 AATAGAAGTTCCCTTTGCATTTATAGCCATGGCTATTCTTGTGTGCTTCTTCATTTCAGT 2203
Query 2210 TTAGTGTTAAGTGCTTGTAACCTACTTCAACTGCA----CT--A--T---C-TTATGAAT 2257
|||||| |||||| |||||||| ||||| |||||| || | | | ||||||||
Sbjct 2204 TTAGTGATAAGTGTTTGTAACCGACTTCGACTGCAGTATCTGCAAGTGAACCTTATGAAT 2263
Query 2258 AACAGTGTCTAGTACTATATCATTCTTCTTTTTAATGTTTCAATAAGATATCTAGAATT 2316
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2264 AACAATGTCTAGTACTATATCATTCTTCTTTTTAAGGTTTCAATAAGATATCTAGAATT 2322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114959248050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5