BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479578
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20530.1 | Symbols: | Protein kinase superfamily protein | ... 2307 0.0
> AT3G20530.1 | Symbols: | Protein kinase superfamily protein
| chr3:7166047-7167929 FORWARD LENGTH=1555
Length=1555
Score = 2307 bits (1249), Expect = 0.0
Identities = 1372/1429 (96%), Gaps = 17/1429 (1%)
Strand=Plus/Plus
Query 1 CTCATTTTTGTTTGTTCCTTCTTTCTTTTGAGGCCAAAAGAGACCAGATTCATTTTTGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CTCATTTTTGTTTGTTCCTTCTTTCTTTTGAGGCCAAAAGAGACCAGATTCATTTTTGGT 70
Query 61 TTCTTCAAAGGCCAAACCtttttttttCTTATTTTCTCAG-CAAACCCTTTTGCCATCTT 119
|||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||
Sbjct 71 TTCTTCAAAGGCCAAACC--TTATTTTCTTATTTTCTCAGACAAACCCTTTTGCCATATT 128
Query 120 ACAAAATAAAATCTGTTCGTCTGAGAATTATCTCGATCCCTTTTGGATTCGAGGTTCAAG 179
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 129 ACAAAATAAAATTTATTCGTCTGAGAATTATCTTGATCCCTTTTGGATTCGAGGTTCAAG 188
Query 180 AACATTCATGAACTTCGAGT-AATCAGATCATCTTCTTGTAGTAATAATCCAGGAAGATA 238
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 189 AACATTCATGAACTTCGAGTAAATCA-ATCATCTTCTTGTAGTAATAATCCAGGAAGATA 247
Query 239 CA-TAAC-A-ACACATAATACAGAATGAAAATAAATTGCTTGTTCTGTTGTATGTCCGAG 295
|| || | | |||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 248 CATTATCAACACACATAAAACAGAATGAAAATCAATTGCTTGTTCTGTTGTATGTCCCAC 307
Query 296 AGACGATTTACCAGACGATCATCATCGAGACAAAGCATCAAAGACTGCATTGATGCAAAG 355
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AGACGATTTAACAGACGATCATCATCGAGACAAAGCATCAAAGACTGCATTGATGCAAAG 367
Query 356 AACAATATAACTACGTTTGACAACATCTCTTTTAAAACAGATAGCAGTAGGCGAAGATAC 415
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AACAATATAACTACATTTGACAACATCTCTTTTAAAACAGATAGCAGTAGGCGAAGATAC 427
Query 416 ATATCCGAGGAGATAGCAAAACTCGGTAAAGGGAACATCAGTGCTCACATTTTCACATTC 475
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 428 ATATCCGAGGAGATAGCAAAACTCGGTAAAGGGAACATCAGTGCTCATATTTTTACATTC 487
Query 476 AGAGAGCTCTGCGTCGCCACCAAGAACTTCAACCCCGATAATCAGCTCGGTGAAGGCGGG 535
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGAGAGCTTTGCGTCGCTACCAAGAACTTCAACCCCGATAATCAGCTCGGTGAAGGCGGG 547
Query 536 TTTGGAAGGGTTTACAAAGGGCACATAGAAACCCCGGAACAAGTTGTTGCGGTTAAGCAG 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 548 TTTGGAAGGGTTTACAAAGGGCAGATAGAAACCCCGGAACAAGTTGTTGCGGTTAAGCAG 607
Query 596 CTAGACAGGAATGGTTACCAAGGGAACAGAGAGTTTCTTGTGGAAGTCATGATGTTGAGT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTAGACAGGAATGGTTACCAAGGGAACAGAGAGTTTCTTGTGGAAGTCATGATGTTGAGT 667
Query 656 CTCTTACATCATCAAAACCTTGTCAATTTGGTTGGATATTGCGCAGATGGCGATCAACGG 715
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 668 CTCTTACATCATCAAAACCTTGTCAATTTGGTCGGATATTGCGCAGACGGTGATCAACGG 727
Query 716 ATTCTTGTCTATGAATATATGCAAAATGGCTCTTTAGAGGATCATCTTCTTGAATTGGCG 775
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 728 ATTCTTGTCTATGAATACATGCAAAATGGCTCTTTAGAGGATCATCTTCTAGAATTGGCG 787
Query 776 CGGAACAAGAAGAAGCCGTTGGATTGGGACACAAGAATGAAAGTTGCAGCAGGAGCAGCG 835
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 788 CGGAACAAGAAGAAGCCGTTGGATTGGGACACAAGAATGAAAGTTGCGGCAGGAGCAGCT 847
Query 836 AGAGGGCTTGAGTATCTACACGAAACAGCTGATCCTCCTGTGATCTACAGAGATTTCAAG 895
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 848 AGAGGGCTTGAGTATCTACACGAAACAGCAGATCCTCCTGTTATCTACAGAGACTTCAAG 907
Query 896 GCCTCAAACATATTGCTTGACGAAGAATTCAATCCAAAGCTTTCGGATTTCGGTTTAGCT 955
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 908 GCCTCAAATATATTACTTGACGAAGAATTCAACCCAAAGCTTTCGGATTTCGGTTTAGCT 967
Query 956 AAGGTTGGTCCGACCGGTGGAGAGACTCATGTGTCAACGAGAGTGATGGGAACATACGGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AAGGTTGGTCCGACCGGTGGAGAGACTCATGTGTCAACGAGAGTGATGGGAACATACGGC 1027
Query 1016 TATTGTGCGCCTGAGTATGCTCTCACAGGACAGCTCACTGTGAAATCAGATGTATACAGC 1075
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1028 TATTGTGCGCCTGAGTATGCTCTCACAGGACAGCTCACTGTGAAATCCGATGTATACAGC 1087
Query 1076 TTTGGAGTCGTGTTCTTGGAGATGATCACAGGAAGAAGAGTCATTGACACCACAAAACCA 1135
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1088 TTCGGAGTCGTGTTCTTGGAGATGATCACAGGAAGACGAGTCATTGACACAACAAAACCA 1147
Query 1136 ACTCAAGAACAGAACTTAGTCACTTGGGCGAGTCCATTGTTTAAAGATAGGAGAAAGTTC 1195
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1148 ACTGAAGAACAGAACTTAGTCACTTGGGCGAGTCCATTGTTCAAAGATAGGAGAAAGTTC 1207
Query 1196 ACGTTAATGGCGGATCCATTGCTTGAAGGAAAGTACCCGATAAAAGGATTGTATCAAGCG 1255
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1208 ACGTTAATGGCAGATCCATTGCTTGAAGGAAAGTATCCAATAAAAGGATTGTATCAAGCG 1267
Query 1256 CTTGCAGTAGCAGCAATGTGTCTTCAAGAAGAAGCAGCAACGAGACCAATGATGAGTGAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CTTGCAGTAGCAGCAATGTGTCTTCAAGAAGAAGCAGCAACGAGACCAATGATGAGTGAT 1327
Query 1316 GTAGTCACTGCGCTTGAGTACTTAGCCATGACCAAAACCGAAGAAGATGGACAAACTGTa 1375
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1328 GTAGTCACTGCGCTTGAGTACTTAGCCGTGACCAAAACCGAAGAAGATGGACAAACTGTA 1387
Query 1376 gaag-a-a-gaagaagaaga------cgaaagaTCCAAACTTTGAGCAA 1415
|||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 1388 GAAGGAGAAGAAGAAGAAGAAGAAGACGAAAGATCCAAACTTTGAGCAA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5