BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479579
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20550.1 | Symbols: DDL | SMAD/FHA domain-containing protein... 1807 0.0
> AT3G20550.1 | Symbols: DDL | SMAD/FHA domain-containing protein
| chr3:7174464-7177942 REVERSE LENGTH=1281
Length=1281
Score = 1807 bits (978), Expect = 0.0
Identities = 1131/1203 (94%), Gaps = 17/1203 (1%)
Strand=Plus/Plus
Query 1 ATCTCTGCGATTATTATTATTCACTCTCTCCTCTTCTCTCCGCCGAAGTAGTCACAGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 ATCTCTGCGATTATTATTATTCACTCTCTCCTCTTCTCTCCGCCGAAGTAGTCACAGTTC 61
Query 61 CGGCCACCAGGCAAAGAAGAGAGAAAACGA-CCTGTCTCCAATAATGGCTCCTAGTTCTA 119
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 62 CGGCCACCAGGCAAAGAAGAGAGAAAACGACCCTGACTCCAATAATGGCTCCTAGTTCTA 121
Query 120 GGTCTCCTTCACCACGTACTaagagattgagaagagctcaaggcgagaagaaggaggttg 179
||||||||||||||||||| |||||| |||||||||||| | | ||| ||||||| |||
Sbjct 122 GGTCTCCTTCACCACGTACGAAGAGACTGAGAAGAGCTCGA-G-GAG-AGAAGGAAATTG 178
Query 180 ggagaagtagagagagagaagatgatggtagaggaagggagaagagaaacagtagggaaa 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 GGAGAAGTAGAGAGAGAGAAGATGATGGTAGAGAAAGGGAGAAGAGAAACAGTAGGGAAA 238
Query 240 gggatggagatATAGGAAGAGAT-----T-GGGACAG----GGAG-A-GAAAAAGAGATA 287
||||| ||||||||||||||||| | |||| || |||| | || |||||||||
Sbjct 239 GGGATAGAGATATAGGAAGAGATAGGGATAGGGAGAGAAAAGGAGAAGGAGAAAGAGATA 298
Query 288 GGGAAGTTGGGGATAAGAGAAGACGATCAGGGAGAGAGGATACTGAAGAAAGGGGAAGGG 347
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 299 GGGAAGTTGGGGATAAGAGAAGACGATCAGGGAGAGAGGATACTGAAAAAAGGAGAAGGA 358
Query 348 CAGGAAGAGATGATGAGAGATACTCTAAAGGAAGACATGAGAGGTCTACTTCACCGTCAG 407
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 CAAGAACAGATGATGAGAGATACTCTAGAGGAAGACATGAGAGGTCTACTTCACCGTCAG 418
Query 408 ATAGGAGTCGCATGAGTAGTAGGCGTTCACCTGAAAGAGCTATTGCCTCAAGGCATGATG 467
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATAGGAGTCACAGGAGTAGTAGGCGTTCACCTGAAAGAGCTATTGCCTCAAGGCATGATG 478
Query 468 AGGGGTCTAATGCAAGAGGGGGTGGCGAGGAGCCAAATGTTGAGGAAGATTCAGTCGCAA 527
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 479 AGGGGTCTAATGCAAGAGGGGGCAGCGAGGAGCCAAATGTCGAGGAAGATTCAGTCGCGA 538
Query 528 GAATGAGAGCAGTTGAAGAGGCTCTGGCAGCAAAGAAAAAGGAAGAACCATCATTTGAGC 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GAATGAGAGCAGTTGAAGAGGCTCTGGCAGCGAAGAAAAAGGAAGAACCATCATTTGAGC 598
Query 588 TATCAGGGAAACTTGCTGAAGAAACCAACAGATACAGAGGTATCACACTCCTGTTCAATG 647
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 599 TATCAGGGAAACTTGCTGAAGAAACTAACAGATACAGAGGTATCACACTCCTCTTCAATG 658
Query 648 AGCCCCCGGAGGCTAGAAAACCCAGCGAAAGATGGAGACTATATGTTTTTAAGGATGGTG 707
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 659 AGCCCCCAGAGGCTAGAAAACCCAGCGAACGATGGAGACTGTATGTTTTTAAGGATGGTG 718
Query 708 AACCACTGAATGAGCCACTCTGCCTCCATCGCCAAAGTTGCTATCTCTTTGGACGTGAAA 767
||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 719 AACCACTGAATGAGCCACTCTGCCTTCACCGCCAAAGCTGCTACCTCTTTGGACGTGAAA 778
Query 768 GAAGGATTGCCGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCAGTCATTC 827
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 GAAGGATTGCCGACATTCCTACGGATCACCCATCTTGCAGCAAGCAGCATGCTGTCATTC 838
Query 828 AGTACCGGGAAATGGAAAAGGAGAAACCGGATGGTATGATGGGGAAGCAAGTGAAGCCTT 887
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 AGTACCGGGAAATGGAAAAGGAGAAACCAGATGGTATGATGGGGAAGCAAGTGAAGCCTT 898
Query 888 ACATAATGGATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCAC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACATAATGGATCTTGGTAGTACCAACAAAACTTATATCAATGAAAGTCCCATTGAGCCAC 958
Query 948 AAAGATATTATGAGCTTTTTGAGAAAGACACCATAAAGTTCGGCAACAGCAGCCGAGAGT 1007
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 AAAGATATTATGAGCTTTTTGAGAAAGACACCATAAAGTTTGGCAACAGCAGCCGAGAGT 1018
Query 1008 ACGTACTGTTGCACGAGAATTCTGCTGAGTGAATGAAATCAGAGTCGAGCAGCAAGGAGT 1067
||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 1019 ACGTACTGTTGCACGAGAATTCTGCCGAGTGAATGAAATCAGAGTCAAGCAGAAACGAGT 1078
Query 1068 ATATCTCAAGATTTAGATAGTTGCGTTTCTCAGAGATTTTAGAGATGCTTGAGCTGCTTC 1127
| ||| ||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1079 AAATCACAAGATT-AGATAGTTGCGTTTCTCAGGGTTTTTAGAGATGTTTGAGCTGCTTC 1137
Query 1128 GTGCCTGTTTTCTACTGTGCTGGTGACAATCTCAGATAACATTTAGAAAGCTTTTGCTTA 1187
|| || ||||||| |||||||||| ||||||||| | |||||||||| |||||||||
Sbjct 1138 ATGTATGCTTTCTACCGTGCTGGTGATAATCTCAGACATCATTTAGAAATCTTTTGCTTG 1197
Query 1188 CTT 1190
|||
Sbjct 1198 CTT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5