BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479582
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20560.1 | Symbols: ATPDIL5-3, PDI12, ATPDI12, PDIL5-3 | PDI... 2874 0.0
AT1G50950.1 | Symbols: | Thioredoxin protein with domain of un... 1212 0.0
> AT3G20560.1 | Symbols: ATPDIL5-3, PDI12, ATPDI12, PDIL5-3 | PDI-like
5-3 | chr3:7182035-7186567 FORWARD LENGTH=1776
Length=1776
Score = 2874 bits (1556), Expect = 0.0
Identities = 1689/1754 (96%), Gaps = 6/1754 (0%)
Strand=Plus/Plus
Query 1 AATCACGAAATCACGACCGCATTagagaagaaagagagagagagCTCTTCTTCTTCTTCC 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 8 AATCACGAAATCACGACCGCATTAGAGAAGAAAGAGAGAGAGAGAGCTT-TTCTTCTTCT 66
Query 61 TCTTCCGCTCACTAGATCTGCTCTCTCTCGCAGTCTCCTGGGTTTTGGC-AATTGCTTTC 119
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 67 TCTTCCGCTCACTAGATCTGCTCCCTCTCGCAGTCTCCTGGGTTTTGGCAAATTGCTTTT 126
Query 120 GTTTCTTCTC-GGCGGCAGCCATGGTTTCATCCACCAAACTCAAGTCCGTTGATTTCTAC 178
| |||||||| || |||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 127 GATTCTTCTCGGGTGGCAGCTATGGTTTCCTCCACCAAACTCAAATCCGTTGATTTCTAC 186
Query 179 AGGAAAATCCCGAGAGATTTGACGGAGGCGTCTCTATCAGGCGCTGGGTTATCAATTGTA 238
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 187 AGGAAAATTCCGAGAGATTTGACGGAGGCATCTCTATCAGGCGCTGGGTTATCAATTGTA 246
Query 239 GCTGCTCTCTTTATGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGAAGTTAAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCTGCTCTCTTTATGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGAAGTTAAC 306
Query 299 ACTACCACAGCTGTAATAGTTGACAAGAGCAGTGATGGAGACTTCTTACGCATTGATTTC 358
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 307 ACTACCACAGCTGTTATAGTTGACAAGAGCAGTGATGGTGACTTCTTACGCATTGATTTC 366
Query 359 AACATCAGTTTTCCTGCCCTTTCATGTGAATTTGCATCTGTTGATGTGAGCGACGTGTTG 418
||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||
Sbjct 367 AACATCAGTTTTCCTGCTCTTTCCTGTGAATTTGCATCCGTTGATGTGAGCGATGTCTTG 426
Query 419 GGAACAAATAGGTTGAATATAACAAAAACAATTCGCAAGTTTCCAATTGACCCGCATTTA 478
||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 427 GGAACGAATAGGTTGAATATAACAAAAACAGTTCGCAAGTTTCCAATTGATCCACATTTA 486
Query 479 AGGTCCACCGGCGCAGAATTCCACTCTGGCCTTGCATTACATAACATTAACCATGGAGAA 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 AGGTCCACCGGCGCAGAATTCCACTCTGGCCTTGCATTACATAACATAAACCATGGAGAA 546
Query 539 GAAACTAAGGAAGAGTTTCCTGATGGTGCTATACCATTAACCAGTGCTAGTTTTGAAGCA 598
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 547 GAAACTAAGGAAGAGTTTCCTGATGGTGCTATACCATTGACCAGTGCTAGTTTTGAAGCA 606
Query 599 CTATCACATCACTTTCCAATATTGGTTGTCAACTTCAATGCACCATGGTGCTACTGGAGT 658
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 607 TTATCACATCACTTTCCAATATTGGTTGTTAACTTTAATGCACCATGGTGCTACTGGAGT 666
Query 659 AATCGTCTGAAACCTGCATGGGAAAAAGCAGCTAATATAATAAAACAAAGATATGATCCT 718
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 667 AATCGTCTGAAACCTTCATGGGAGAAAGCAGCTAATATAATAAAACAAAGATATGATCCT 726
Query 719 GAAGCTGATGGTCGTGTTCTTCTAGGAAACGTTGATTGCACGGAAGAACCTGCGCTATGT 778
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 727 GAAGCTGATGGCCGTGTTCTTCTAGGAAATGTTGATTGCACGGAAGAACCTGCGCTATGT 786
Query 779 AAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGACCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGACCTT 846
Query 839 AGAGAGGACCATGGACACCACGAACATGAATCTTACTATGGAGATCGGGACACGGATAGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 847 AGAGAGGACCATGGACACCACGAACATGAATCTTACTATGGAGATCGGGACACAGACAGT 906
Query 899 ATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAGACTCACAAGGTAGCT 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 907 ATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAGACTCACAAGGTGGCT 966
Query 959 TTGGATGGTAAATCCAATGATACCGTAAAGA-ATCTTAAAAAGGCACCAGTTACAGGAGG 1017
|||||||| |||||||||||||| ||||| | |||||||||||| |||||||||||||||
Sbjct 967 TTGGATGGAAAATCCAATGATACTGTAAA-ACATCTTAAAAAGGGACCAGTTACAGGAGG 1025
Query 1018 TTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGAAACCTCGTTATCTCAGC 1077
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1026 TTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGAAATCTCGTGATCTCAGC 1085
Query 1078 TCATTCAGGAGCTCATTCATTCGATTCTTCTCAAATGAACATGTCGCATGTTGTGTCCCA 1137
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1086 TCATTCAGGAGCTCATTCATTTGATTCTTCTCAAATGAACATGTCGCATGTTGTTTCTCA 1145
Query 1138 TCTTTCGTTTGGGAGGATGATTTCTCCTAGGTTGCTGACCGATATGAAACGGTTGTTGCC 1197
| ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 1146 TTTTTCGTTTGGGAGGATGATTTCTCCTAGGCTGCTGACCGATATGAAGCGATTGTTGCC 1205
Query 1198 ATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAACATGAGTT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAACATGAGTT 1265
Query 1258 TGGTGCCAATGTCACTATCGAACACTACCTTCAAATAGTCAAAACAGAGGTCATTACAAG 1317
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1266 TGGTGCCAATGTCACTATCGAACACTACCTTCAAACAGTCAAAACAGAGGTCATTACAAG 1325
Query 1318 AAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCACAGCAGCGT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 AAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCACAGCAGCGT 1385
Query 1378 GGCTCAGACTTACTACTTACCCGTTGCGAAGTTTCACTTTGAGCTCTCTCCCATGCAGAT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1386 GGCTCAGACTTACTACTTACCCGTTGCGAAGTTTCACTTTGAGCTCTCTCCTATGCAGAT 1445
Query 1438 CTTAATAACCGAAAACCCAAAGTCCTTCTCACACTTCATCACAAATCTGTGTGCCATTAT 1497
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CTTAATAACCGAAAACCCGAAGTCCTTCTCACACTTCATCACAAATCTGTGTGCCATTAT 1505
Query 1498 TGGTGGTGTTTTCACGGTTGCCGGAATACTTGATTCGATTTTCCACAATACAGTAAGACT 1557
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1506 TGGTGGTGTTTTCACGGTTGCCGGAATACTAGATTCGATTTTTCACAATACAGTAAGACT 1565
Query 1558 GATAAAAAAGGTCGAACTTGGGAAAAACATTTGATCGTCCACCGGAGGTTAGAATTTTCC 1617
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1566 GGTAAAAAAGGTCGAACTTGGGAAAAACATTTGATCGTCCACTGGAGGTTAGAATTTTCC 1625
Query 1618 ATTAATCTATAAAACCATAGAAGAACCTCAGACTGTTTACTTCGAATAGCTGATCTACAT 1677
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1626 ATTAATATATAAAACCATAGAAGAACCTCAGACTGTTTACTTTGAATAGCTGATCTACAC 1685
Query 1678 AGAAAACCTCAAAAAA-GAGAGAATTTTTGTTTGACACAATCTTAGTTTCTTTACGGTTC 1736
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1686 AGAAAAACTCAAAAAAAGAGAGAATTTTTGTTTGACACAATCTTAGTTTCTTTATGGTTC 1745
Query 1737 TTGTTCTATTAAAA 1750
||||||||||||||
Sbjct 1746 TTGTTCTATTAAAA 1759
> AT1G50950.1 | Symbols: | Thioredoxin protein with domain of
unknown function (DUF1692) | chr1:18880320-18884225 FORWARD
LENGTH=1782
Length=1782
Score = 1212 bits (656), Expect = 0.0
Identities = 1224/1492 (82%), Gaps = 63/1492 (4%)
Strand=Plus/Plus
Query 135 CAGCCATGGTTTCATCCACCAA-ACTCAAGTCCGTTGATTTCTACAGGAAAATCCCGAGA 193
|||||||||||||| || |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 141 CAGCCATGGTTTCAACCTCCAAGA-TCAAGTCCGTTGATTTCTACAGGAAAATCCCAAGA 199
Query 194 GATTTGACGGAGGCGTCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTT--TA 251
|||||||| || || ||||| || || ||||| ||||| ||||||||||| | ||| ||
Sbjct 200 GATTTGACTGAAGCATCTCTCTCTGGTGCTGGATTATCCATTGTAGCTGC-C-CTTGCTA 257
Query 252 TGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGG-AAGTTAACACTACCACAGCT 310
|| |||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 258 TGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGCTA-TTAACACTAGCACATCT 316
Query 311 GTAATAGTTGACAAGAGCAGTGATGGAGACTTCTTACGCATTGATTTCAACATCAGTTTT 370
|||||||||||||| ||| |||||| ||||||||| ||||||||| |||||||| |||
Sbjct 317 GTAATAGTTGACAAAAGCTCTGATGGGGACTTCTTAAACATTGATTTTAACATCAGCTTT 376
Query 371 CCTGCCCTTTCATGTGAATTTGCATCTGTTGATGTGAGCGACGTGTTGGGAACAAATAGG 430
|||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | |||
Sbjct 377 CCTGCCCTCTCATGTGAATTCGCATCAGTTGACGTGAGTGACGTGTTTGGAACTCACAGG 436
Query 431 TTGAATATAACAAAAACAATTCG-CAAGTTTCCAATTGACCCGCATTTAAG-GTCCACCG 488
|| |||||| | ||||| ||| | ||| |||||||||| ||||||||||| | ||| |
Sbjct 437 TTAAATATATCGAAAACGATTAGAAAAG-TTCCAATTGATCCGCATTTAAGAG-CCA-CT 493
Query 489 GC-GCA-GAATTCCACTCTGGCCT-TGCA-TTACATAACATTAACCATGGAGAAGAA-AC 543
|| | | ||||| ||||| ||| || | |||||| ||| ||||||||||| ||| |
Sbjct 494 GCTG-AGGAATTTCACTC-CACCTCTG-ATTTACATCTCATCAACCATGGAGACGAAGA- 549
Query 544 T-AAGG-AAGAGT-TTCCTGATG-GTGCTATACCATTAACCAGTGCTAG-TTTTGAAGCA 598
| | || | | | | || ||| | | |||||| ||||| ||||| | ||||| || |
Sbjct 550 TCATGGTGACAATAGTACTTATGCG-GATATACCCTTAACTGGTGCT-GCTTTTG-AGAA 606
Query 599 CTAT-CACATCACTTTCCAATATTGGTTGTCAACTTCAATGCACCATGGTGCTACTGGAG 657
| | ||||||| |||| ||| |||||||| || || |||| |||||||||||||||||
Sbjct 607 GTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCGCCATGGTGCTACTGGAG 666
Query 658 TAATCGTCTGAAACC-TGCATGGGAAAAAGCAGCT-AATATAATAAAACAAAGATATGAT 715
|||||| |||||||| | | |||| |||||| || || |||| | | |||||||| ||
Sbjct 667 TAATCGCCTGAAACCAT-CTTGGGTGAAAGCATCTCAA-ATAACGAGAGAAAGATATAAT 724
Query 716 CCT-GAAGCTGATGGTCGTGTTCTTCTAGGAAACGTTGATTGCACGGAAGAACCTGCGCT 774
||| ||| |||||| |||||||||| |||||| ||||||||||| ||||||||| | ||
Sbjct 725 CCTGGAA-CTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACAGAAGAACCTACCCT 783
Query 775 ATGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGA 834
||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 784 ATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTCCGCAGAGGCAGTGG 843
Query 835 CCTTAGAGAGGACCAT-GGACACCACGAACATGAATCTTACTATGGAGATCGGGACACGG 893
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 844 TCTTAGGGAGGACCATGGGA-ACCACGAACATGAATCTTACTATGGAGATCGGGACACAG 902
Query 894 ATAG-TATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAG-ACTCACAA 951
|||| | |||| ||||||||||| | |||| || |||||| | |||| | ||| ||
Sbjct 903 ATAGCT-TAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAGGAGGA-TCATAA 960
Query 952 GGTAGCTTTGGATGGTAAATCCAATGATACCG-TAAAGAATCTTAAAAAGGCACCAGTTA 1010
| | ||||||||||||||||| || || | | | | | | ||||||||||||||||||
Sbjct 961 GTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCA-ACTTTTAAAAAGGCACCAGTTA 1019
Query 1011 CAGGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGA-AACCTCGTT 1069
||||||||| || ||||||| ||||| || | |||||||||||| || ||| | ||
Sbjct 1020 GTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGCGAACTT-GTA 1078
Query 1070 ATCTCAGCTCATTCAGGAGCTCATTCATTCGATTCTTCTCAAATGAACATGTCGCATGTT 1129
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||
Sbjct 1079 ATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATGTCTCATATT 1138
Query 1130 GTGT-CCCATCTTTCGTTTGGGAGGATGATTTCTCCTAGGTTGCTG-ACCGATATGAAAC 1187
|| | ||||||| | ||||| | ||| |||| |||||| || || ||||||||||
Sbjct 1139 GT-TACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTG-TGGACTGATATGAAAC 1196
Query 1188 GGTTGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATC 1247
| || |||| |||||||||| |||| |||| |||||| ||||||| | ||||| |||
Sbjct 1197 GATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTCATCAATG 1256
Query 1248 AAC-ATGAGTTTGG-TGCCAATGTCACTATCGAACACTACCTT-CAAATAGTCAAAACAG 1304
||| | | || || ||| ||||| || |||||||||||| || |||||| |||||||||
Sbjct 1257 AACGACAA-TT-GGATGCTAATGTTACAATCGAACACTAC-TTGCAAATAATCAAAACAG 1313
Query 1305 AGGTCATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCG 1364
|||||||| ||||||||||||| |||||||| ||| |||| |||||||||||||| || |
Sbjct 1314 AGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATATACGG 1373
Query 1365 CTCACAGCAGCGTGGCTCAG-ACTTACTACTTACCC-GTTGCGAAGTTTCACTTTGAGCT 1422
|||| |||||||| |||| | | |||| | ||| || | || |||||||||||||||||
Sbjct 1374 CTCATAGCAGCGTAGCTC-GTAGTTACCA-TTATCCTGAAGCAAAGTTTCACTTTGAGCT 1431
Query 1423 CTCTCCCATGCAGATCTTAATAACCGAAAACCCAAAGTCCTTCTCACACTTCATCACAAA 1482
|||||| |||||| || |||||| ||| ||||||||||| ||||| ||||||||||||||
Sbjct 1432 CTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACAAA 1491
Query 1483 TCTGTGTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTTGATTCGAT-TTTCC 1541
| | || ||||| || || |||||||| ||||| || |||||||| ||||| || ||||
Sbjct 1492 TGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTTCA 1551
Query 1542 ACAATACAGTAAGACTGATAAAAAAGGTCGAACTTGGGAAAAACATTTGATC 1593
| || ||||| ||| || | |||||| ||||||| |||||||||||||||||
Sbjct 1552 A-AACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATC 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86545739580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5