BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479583
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20570.1 | Symbols: ENODL9, AtENODL9 | early nodulin-like pr... 1375 0.0
> AT3G20570.1 | Symbols: ENODL9, AtENODL9 | early nodulin-like
protein 9 | chr3:7186522-7187521 REVERSE LENGTH=912
Length=912
Score = 1375 bits (744), Expect = 0.0
Identities = 816/850 (96%), Gaps = 7/850 (1%)
Strand=Plus/Plus
Query 1 AGCTTACGAAATGGCACGAAACCTAAAGAACATGATGCTTTGTGGGTTTGGTCTCGTGTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 59 AGCTTACGAAATGGCACGAAACCTAAAGAGCATGATGCTTTGTGGGTTTGGTCTCTTGTG 118
Query 61 TTTTCTTATGATCGTTGACAGAGCCTACGCTAGAGAGTTTACGGTCGGTGGTGCAACAGG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTTTCTTATGATCGTTGACCGAGCCTACGCTAGAGAGTTTACGGTCGGTGGTGCAACAGG 178
Query 121 TTGGACTGTCCCTTCTGGTGCTCAAGTGTACAGTCAATGGGCAGAACAGAGCAGATTCCA 180
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGGACCGTCCCTTCTGGTTCTCAAGTGTACAGTCAATGGGCAGAACAGAGCAGATTCCA 238
Query 181 AATCGGCGACTCTCTGTTGTTCGTCTACCAATCAAACCAAGATTCAGTGCTCCAAGTCAC 240
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATTGGTGACTCTCTGTTGTTCGTCTACCAATCAAACCAAGATTCAGTGCTCCAAGTCAC 298
Query 241 AAGAGACGCTTACGACAGCTGCAACACGGACTCACCAACCGCTAAATTCGCCGATGGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAGACGCTTACGACAGCTGCAACACGGACTCACCAACCGCTAAATTCGCCGATGGCAA 358
Query 301 AACTTCCGTCACGCTGAACCACTCTGGGCCATACTATTTCATCAGTGGAAACAAAGACAA 360
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 AACTTCTGTCACGCTGAACCACTCTGGGCCATACTATTTCATTAGTGGAAACAAAGACAA 418
Query 361 CTGCAAGAAAAACGAGAAGCTTGTGGTCATTGTCATGGCTGATAGAAGCGGCAACAAAAA 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 CTGCAAGAAAAACGAGAAGCTTGTGGTCATCGTCATGGCTGATAGAAGCGGCAACAAAAA 478
Query 421 CACCACATCATCACCGCCGTCCCCTGCCCCAGCTCCCTCAGGAGAATCCTCTCCTTCTCC 480
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 479 CACCGCATCATCACCGCCGTCCCCAGCCCCAGCTCCCTCAGGAGAATCCGCTCCTTCTCC 538
Query 481 GCCTGTCTCGGGAACCTTTGAGATGACCCCAGCACCGACGCCTACTACTTCTCAAGAAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 539 ACCTGTCTCGGGAACCTTTGAGATGACCCCAGCACCGACGCCTACTACTTCTGAAGACAC 598
Query 541 TCCAAACAACGCAGCTTCTTCTTCTTCATCCTTTGTCGCTGCTCTTCTTGGGGCTGCTCT 600
|||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 599 TCCAAACAGCGCAGCTTCTTC--CTT-ATCATTTGTCGCTGCTCTTCTTGGGGCTGCTCT 655
Query 601 AGCTTCCACTCTATTCCTACACTAAGAAGTTTCTCTTTTGTCTTCCGATTTCAATCTGTA 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 656 AGCTTCCACTCTATTCCTACACTAAGAAGTTTCTCTTTTGTCTTCCCTTTTCATTCTGTA 715
Query 661 TTGAGTCTTTTCCCTTTCTCTCTTCATCCAAGTTTGTGTCAATTGGTGTTTGTTGTTTGA 720
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCGAGTCTTTTCCCTTTCCCTCTTCATCCAAGTTTGTGTCAATTGGTGTTTGTTGTTTGA 775
Query 721 ttttttttACCCCATTTGTTTTTTATGTAAATGAATAAAAGTTCTACTTGTGTGTATTTT 780
|||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 776 TTTTTT--ACCCCATTTGTTTTTCATGTATATGAATAAAAGTTCTACTCGTGTGTATTTT 833
Query 781 ACTGATGTCATATGTATATAGTAATAGAAGGATaa-aaaaaCCAGGCGGATTTTTAATAG 839
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 834 ACTGATGTCATATGTATATAGTAATGGAAGGATAAGAAAAACCAGGCGGATTTT-AATAG 892
Query 840 AACAAGAACC 849
||||||||||
Sbjct 893 AACAAGAACC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5