BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479584
Length=2372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20580.1 | Symbols: COBL10 | COBRA-like protein 10 precursor... 3794 0.0
> AT3G20580.1 | Symbols: COBL10 | COBRA-like protein 10 precursor
| chr3:7187856-7190562 REVERSE LENGTH=2372
Length=2372
Score = 3794 bits (2054), Expect = 0.0
Identities = 2275/2381 (96%), Gaps = 18/2381 (1%)
Strand=Plus/Plus
Query 1 AGATTTCTCACACTAAACCTTATTCGTTGATCAATCTTCATCTTTGTCAAAAAGG-TTCG 59
|||||| ||||| |||||||||||||||||||||||||| ||||||| |||||| || |
Sbjct 1 AGATTTTTCACATTAAACCTTATTCGTTGATCAATCTTCGTCTTTGTTTAAAAGGCTT-G 59
Query 60 GTTGATTCCTAGtttttttttCTTTCTCTCGCTGCCTTGCGGTTCCAGTAATCACAAGGC 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GTTGATTCCTAGTTTTTTTTTC--TCTCTCGCTGCCTTGCGGTTCCAGTAATCACAAGGC 117
Query 120 GGTGGGGAAGAAGaaaaaaaaTTGATAACGATGAGGGCTATTGACGTTAAAACGGGGATG 179
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGTGGGGAAGAAG-AAAAAGATTGATAACGATGAGGGCTATTGACGTTAAAACGGGGATG 176
Query 180 AAGATACCTTGGGACGTACGCTATTCATTAAGTCTATTTATTTTGTTATCATCAATTCTT 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 177 AAGATACCTTGGGACGTACGCTATTCATTAAGTCTATTTATTTTCTTATCATCAATTCTT 236
Query 240 TTTGTTTGCAACGGCCAAGATTATGGAACT-CCGGGTGAGGA---CGGAGGAGGAGCTGA 295
||| ||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 237 TTTCTTTCCAACGGCCAAGATTATGGAA-TGCCGGGCGAGGATGGAGGAGGAGGAGCTGA 295
Query 296 GCCACCGCCTGAGATGGCGCAATGCAATGGTATTTTCATGAGCTACAACTTTGGTAGCCG 355
||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 296 GCCACCGCCGGAGATGGCACATTGTAACGGTATTTTCATGAGCTACAACTTTGGTAGCCG 355
Query 356 CGAAAGAGAGTACCCGCACGTCAAGAATGTGACCGCGCAATCATGGGCGTTTAAATCGAC 415
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 356 TGAAAGAGAGTACCCGCACGTGAAGAATGTAACCGCCCAATCATGGGCGTTTAAATCGAC 415
Query 416 TGCGATGATTGTAAACGCGGGTAGGGAAGAACTTAAGGGTTGGCAAATGTTCATAGGGTT 475
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 416 TGCGATGATTGTAAACGCGGGTAGGGAAGAGCTTAAGGGATGGCAAATGTTCATAGGGTT 475
Query 476 CCGTCACAAAGAGCTGATCGTTTCTGCTACTGGTGCGGCTCCTATGGACGGTGATTATCC 535
|||||||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||
Sbjct 476 CCGTCACAAAGAACTGATCGTTTCCGCGACTGGTGCGACTCCTATGGACGGAGATTATCC 535
Query 536 TCTAGACGCGAGCAATGGAACCACGTTTGTTGGATCGCCAAACACGGATTTGAAAACCTC 595
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 536 TCTAGACGCGAGCAATGGAACCACGTTCGTTGGATCGCCAAACATGGATTTAAAAACCTC 595
Query 596 GATTGAAACCGCTGGTGATTTTACTCAGATATCTGCGAATATCGAGATCACAGGAACTCT 655
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 596 TATTGAAACAGCCGGTGATTTCACTCAGATATCTGCGAATATCGAGATCACAGGAACTCT 655
Query 656 TTTCGGGGTTTCAAAAGCCGTCACGCCCATGCCAAAAACTATTAAGCTCACCAACGATGG 715
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TTTTGGGGTTTCAAAAGCGGTCACGCCCATGCCAAGAACTATTAAGCTCACCAACGATGG 715
Query 716 TTGGGAATGTCCCGCCGCTAAAAGAAAAGGAGGTAGTATGCACGTTTGTTGCAAGAGAAA 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 TTGGGAATGTCCCGCCGCTAAAAGAAAAGGAGGTAGTATGCACGTGTGTTGCAAGAGAAA 775
Query 776 CCCTAAGTTCAAGAACAAGACT-GGACTAAAGACAAAGTTTGCACCGAGAAGGAACGGTG 834
||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 776 CCCTAAGATCAAGAACAAGA-TCGGACTAAAGACAAAGTTTGCACCGAGAAGGTACGGTG 834
Query 835 ATTTGAACATAGTCTACGATGTTCTTCAATCGTTCGACAGCAACTACTTAGCCCAAGTGA 894
| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 835 ACCTGAACATAGTCTACGATGTTCTGCAATCATTCGACAGCAACTACTTAGCCCAAGTGA 894
Query 895 CCATCGACAATGATAATCCGCTCGGGCGGTTAGACCGTTGGAACCTGACTTTTGAATGGA 954
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCATCGACAATGATAATCCTCTCGGGCGGTTAGACCGTTGGAACCTGACTTTTGAATGGA 954
Query 955 TGCGAGGAGAGTTTATAAACACTATGCGAGGAGCTTACACTCACAAGAAAGATCCATCAG 1014
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 955 TGCGAGGAGAGTTTATAAACACTATGCGAGGAGCTTACACTCATAAGAAAGATCCATCGG 1014
Query 1015 AATGCCTTTATAGCAAAGCTGGACAGTATTACAAAGACTTAGATTTCTCTCAGGTCATGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1015 AATGCCTTTATAGCAAAGCTGGACAGTATTACAAAGACTTAGATTTCTCCCAGGTCATGA 1074
Query 1075 ATTGTCAGAGGAAACCAGCCATTTCCGATTTGCCTCCTGAGAAGAAGGAAGATAACGTGA 1134
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 ATTGTCAGAGAAAACCAGCCATTTCCGATTTGCCTCCTGAGAAGAAGGAAGATAACATGA 1134
Query 1135 CTGGAAAGTTACCTTTCTGTTGCAAAAACGGAACTCTCTTGCCACCTATTATGGACCCTT 1194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 CAGGAAAGTTACCTTTCTGTTGCAAAAACGGAACTCTCTTGCCACCTATTATGGATCCTT 1194
Query 1195 CGAAATCTAGATCTATGTTTCAATTGCAGGTTTTCAAGTTGCCTCCTGACCTAAATAGAA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 CGAAATCTAGATCTATGTTTCAATTGCAGGTTTTCAAGTTGCCTCCTGACCTAAACAGAA 1254
Query 1255 CAGCTCTATACCCACCTCAGCATTGGAAAATCGACGGTGTTCTCAATCCGCAGTACAAAT 1314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 CAGCTCTATACCCACCTCAGCATTGGAAAATCGACGGTGTTCTCAATCCTCAGTACAAAT 1314
Query 1315 GCGGGCCACCGGTTCGTGTTGACCCGTCTCAATTTCCTGATCCTAGTGGTCTACTGGCTG 1374
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1315 GCGGGCCACCGGTTCGTGTTGACCCGTCTCAATTCCCTGATCCTAGCGGTCTACTGGCTG 1374
Query 1375 TAACCTACGCCATCTCCAGCTGGCAAGTGGTCTGCAACATAACCAAACCCAAAGCACAAG 1434
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1375 TAACCTACGCCATCTCCAGCTGGCAAGTGGTCTGCAACATAACCAAGCCTAAAGCCCAAG 1434
Query 1435 CCTCAAGATGTTGTGTCTCTTTCTCTGCATTTTACAACAACTCTGCAGTTCCTTGCAACA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CCTCAAGATGTTGTGTCTCTTTCTCTGCATTTTACAACAACTCTGCAGTTCCTTGCAACA 1494
Query 1495 CTTGTGCTTGCGGATGCAATGACATCGATACCGACACTTGCAATGCTAACAGTAACCCAC 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1495 CTTGTGCTTGCGGATGCAATGACATCGATACCGACACTTGCAATGCTAACAGTAACCCGC 1554
Query 1555 TCCTCCTCCCTCCTGACGCTCTCCTTGTTCCGTTCGATAACCGAACCTTAAAAGCTAGAG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 TCCTCCTCCCTCCTGACGCTCTCCTTGTTCCGTTCGATAACCGAACCTTAAAAGCTAAAG 1614
Query 1615 CTTGGGCTAAACAAAATCACATGCCAGTACCAAAGAAACTTCCTTGTCCGGATAATTGCG 1674
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1615 CTTGGGCTAAACAAAATCACATGCCAGTACCAAAGAAACTTCCTTGTCCAGATAACTGCG 1674
Query 1675 GAGTCAGTATTAACTGGCACGTTAGCACGGATTACAAAAATGGTTGGACCGCAAGGTTAA 1734
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GAGTCAGCATTAACTGGCACGTTAGCACGGATTACAAAAATGGTTGGACCGCAAGGTTAA 1734
Query 1735 CCGTTTTTAATTGGAGAGATTTCGCGTTTGAGGATTGGTTTGTCGCAATTGATATGGGAA 1794
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1735 CCGTTTTTAATTGGAGAGATTTCGCGTTTGAGGATTGGTTTGTGGCGATTGATATGGGAA 1794
Query 1795 AGGCAGGTCCAGGATATGAAAACGTTTACTCTTTTAATGGAACACGTGTTCCACCAAGCA 1854
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1795 AGGCAGGTCCAGGATATGAAAACGTTTACTCCTTTAATGGAACACGTGTTCCACCAAGCA 1854
Query 1855 ATAGAACCGTTATCTTCCAAGGCTTGCCTGGTATGAACTATCTTGTGGGTCAAGTTAACG 1914
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1855 ATCGAACCGTTATCTTCCAAGGCTTGCCTGGTATGAACTATCTTGTAGGTCAAGTTAATG 1914
Query 1915 GAACAAATCCATTAAGAGACCCTCCCGTGCCCGGAAAGCAACAATCTGTCATCTCCTTCA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAACAAATCCATTAAGAGACCCTCCCGTGCCCGGAAAGCAACAATCTGTCATCTCCTTCA 1974
Query 1975 CCAAGAAAAACATCAAAGCACTGAATATTCCTGAAGGCGACGGTTTCCCAACAAAGCTTT 2034
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1975 CCAAGAAAAACATCAAAGGACTGAATATTCCCGAAGGCGACGGTTTCCCAACAAAGCTTT 2034
Query 2035 TCTTCAACGGAGAAGAATGCGCGCTTCCAAAACATTTCCCCAAGAAGAGCTCAGGACATA 2094
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 2035 TCTTCAATGGAGAAGAATGTGCGCTTCCAAAACATTTCCCTAAGAAGAGCTCAGGGCATA 2094
Query 2095 GACACGGTATCAGTGTCTTGATGTCCTTTGTTTTCGCAACAATGGCAGCTTTTGCACTAA 2154
||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2095 GACGCGGTATCAGTGTCTCAATGTCCTTTGTTTTCGCAACAATCGCGGCTTTTGCACTAA 2154
Query 2155 TGATGGATTAATTACTGAGGAGATAACTAAACTTAGCATTCTTGATCAGTTTTTT-GATT 2213
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 2155 TGATGGATTAATTACTGAGGAGATAACTATACTTACCATTCTTGATCAGTTTTTTTGATC 2214
Query 2214 TTCAAATTCTAAAGATTGGTGTTTTGATGATGTTGGTGAACACAGAGGAAGGATCAAAAG 2273
|||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2215 TTCAAATTCTTAAGATTGGTGTTTTGATGATGTTGCTGAACA--GAGGAAGGATCAAAAG 2272
Query 2274 GAGCAGATTGTTATATGATTGATCTAA-TATGGAAATTTATTGACAATGT-GTATTAATA 2331
||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||
Sbjct 2273 GAGCAGATTGTTATATGATTGATCTAAGT-TGGAAAAATATTGACAATGTTGTATTAATA 2331
Query 2332 CTTTTGTTTGGTCTATAAAAGTATTAAAGTGTATGTTGTTC 2372
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 CTTTTGTTTGGTCTATAAAAGTATTAAAGTGTATGTTGTTC 2372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117770478570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5