BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479585
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20590.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1129 0.0
AT3G20600.1 | Symbols: NDR1 | Late embryogenesis abundant (LEA)... 821 0.0
> AT3G20590.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:7191686-7192453
FORWARD LENGTH=768
Length=768
Score = 1129 bits (611), Expect = 0.0
Identities = 706/752 (94%), Gaps = 5/752 (1%)
Strand=Plus/Plus
Query 9 AGAAGAAGAACTTGGTCGAAAATGTTGTACTTGCTGCTTAAAGTTCATCTTCACAGCTGG 68
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || |
Sbjct 18 AGAAGAAGAACTTGGTCGAAAATGTTGTACCTGCTTCTTCAAGTTCATCTTCACAACTCG 77
Query 69 TCTCGGCGCTCTTATCTTATGGCTTAGTCTCCGTGCC-GGCAAACCCAAATGCTCAATCC 127
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 78 TCTCGGCGCTCTTATCTTATGGCTTAGTCTCCGTGCCAAG-AAACCCAAATGCTCAATCC 136
Query 128 AAAACTTTTACATTCCTGCCCTCAGCAAAAACCTAAGTTCACGAGACAATACCACTCTAA 187
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 137 AAAACTTTTACATTCCTGCCCTCAGCAAAAACCTAAGCTCACGAGACAATACCACTCTAA 196
Query 188 ATTTCATGGTTCGTTGTGACAATCCAAATAGAGACAAAGGAATCTACTACAACGATGTCC 247
||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 197 ATTTCATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCC 256
Query 248 ACCTTATTTTCTCCACCATCAACACGACCAAGACCAATTCATCTGCTCTTGTCTTAGTTG 307
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 257 ACCTTACTTTCTCCACCATCAACACGACCACGACCAATTCATCTGATCTTGTCTTAGTCG 316
Query 308 CTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CTAACTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTC 376
Query 368 AAGTAAAGCCGCTAAACAACCAAACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTG 427
|||| ||||||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 377 AAGTTTGGCCGCTAAACAACCAGACGGTTTTACGAGCTGTTTTGCCTAATGGATCGGCGG 436
Query 428 TTTTCAGGTTGGATCTCAAGACTCAAGTGAGATTCAAGATTGTTTTTTGGAAAACTAAAT 487
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 437 TTTTCAGGCTGGATCTCAAGACTCATGTGAGATTCAAGATTGTTTTTTGGAAAACTAAAT 496
Query 488 GGTATAGGAGAGTGGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTA 547
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GGTATAGGAGAATTAAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTA 556
Query 548 ATGAGAAAGAGATTATGATGAAGAAATCTGATTTTTGGAAAACTCAGGGATATTGGAGTG 607
||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 557 ATGAGAAAGAGATTAAGATGGAGAAATCTAATTTTTGGAAAACTCATGGATATTGGAGTG 616
Query 608 ACTTTGGTGCTGACGATG-T-T-GATCTCACCGGTGATGGAGCTCAAAATAAAGGAAGTA 664
| |||||| |||||||| | | || ||||||||||||||||||||||| ||||||||||
Sbjct 617 AATTTGGTTTTGACGATGATGTTGAACTCACCGGTGATGGAGCTCAAAAGAAAGGAAGTA 676
Query 665 AGATGAAGAAATCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTTGTGTTTTAA 724
||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 677 AGACGAAGAAATCGGATTCTTCTTTACCATTAAGAAGCTCTTTTCCGATTTTTGTTTTGA 736
Query 725 TGAATTTGCTCGTATTCTTCGCTATTCGTTAA 756
||||||||||||||||||| ||||||||||||
Sbjct 737 TGAATTTGCTCGTATTCTTTGCTATTCGTTAA 768
> AT3G20600.1 | Symbols: NDR1 | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family | chr3:7194846-7195736
FORWARD LENGTH=891
Length=891
Score = 821 bits (444), Expect = 0.0
Identities = 529/567 (93%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 21 TGGTCGAAAATGTTGTACTTGCTGCTTAAAG-TTCATCTTCACAGCTGGTCTCGGCGCTC 79
||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 61 TGGTCGAAACTGTTGTACTTGCTGCTT-AAGCTTCATCTTCACAGCTGGTCTCACCTCTC 119
Query 80 TTATCTTATGGCTTAGTCTCCGTGCCGG-CAAACCCAAATGCTCAATCCAAAACTTTTAC 138
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 120 TTTTCTTATGGCTTAGTCTCCGTG-CGGACAAACCCAAATGCTCAATCCAAAACTTTTTC 178
Query 139 ATTCCTGCCCTCAGCAAAA-ACCTAAGTTCACGAGACAATACCACTCTAAATTTCATGGT 197
|||||||||||| | |||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 179 ATTCCTGCCCTC-GGAAAAGACCCAAATTCACGAGACAATACCACTCTAAATTTCATGGT 237
Query 198 TCGTTGTGACAATCCAAATAGAGACAAAGGAATCTACTACAACGATGTCCACCTT-ATTT 256
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||
Sbjct 238 TCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTAATTT 297
Query 257 TCTCCACCATCAACACGACCAAGACCAATTCATCTGCTCTTGTCTTAGTTGCTAACTACA 316
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 298 T-TCCACCATCAACACGACCAAGATCAATTCATCTGCTCTTGTCTTAGTTGGTAACTACA 356
Query 317 CAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGC 416
Query 377 CGCTAAACAACCAAACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGT 436
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCTAAACAACCAGACGGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGT 476
Query 437 TGGATCTCAAGACTCAAGTGAGATTCAAGATTGTTTTTTGGAAAACTAA-ATGGTATAGG 495
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 477 TGGATCTCAAGACTCAAGTTAGATTCAAGATTGTTTTTTGGAAAACTAAGA-GGTAT-GG 534
Query 496 AGAGTGGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTAATGA-GAA 554
| || |||||||| |||||||||||||||||||||||||||||||||||| | || |||
Sbjct 535 -G-GTTGAAGTTGGAGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCA-GAAGAA 591
Query 555 AGAGA-TTATGATGAAGAAATCTGATT 580
|| || ||| |||||||||||||||||
Sbjct 592 AG-GAATTAAGATGAAGAAATCTGATT 617
Score = 176 bits (95), Expect = 3e-43
Identities = 158/186 (85%), Gaps = 13/186 (7%)
Strand=Plus/Plus
Query 579 TTTTTGGAAAACTCAG-GGATATTGGAG-TGACTTTGGTGCTGACGATGTTGATCTCACC 636
||||||||||||| || || || ||| | ||| |||| ||| |||||||| ||| |
Sbjct 511 TTTTTGGAAAACTAAGAGG-TA-TGGGGTTGAAGTTGGAGCT---GATGTTGAAGTCAAC 565
Query 637 GGTGAT-G-G----AGCTCAAAATAAAGGAAGTAAGATGAAGAAATCTGATTCTTCTTTT 690
|||||| | | |||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 566 GGTGATGGAGTTAAAGCTCAGAAGAAAGGAATTAAGATGAAGAAATCTGATTCTTCTTTT 625
Query 691 CCATTAAGAAGCTCTTTTCCGATTTGTGTTTTAATGAATTTGCTCGTATTCTTCGCTATT 750
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||
Sbjct 626 CCATTAAGAAGCTCTTTTCCGATTAGTGTTTTGATGAATTTACTCGTATTCTTTGCTATT 685
Query 751 CGTTAA 756
||||||
Sbjct 686 CGTTAA 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5