BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479587

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20610.1 | Symbols:  | non-race specific disease resistance ...   375    2e-103


> AT3G20610.1 | Symbols:  | non-race specific disease resistance 
protein, putative | chr3:7196723-7197391 FORWARD LENGTH=669
Length=669

 Score =  375 bits (203),  Expect = 2e-103
 Identities = 222/231 (96%), Gaps = 1/231 (0%)
 Strand=Plus/Plus

Query  192  GGAATCTATTACGACGACCTTCACTTATCTTTCTCCACAAGTATCAACAACTCCTCTCTT  251
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  235  GGAATCTATTACGAAGACCTTCACTTATCTTTCTCCACACGTATCAACAACTCCTCTCTT  294

Query  252  CCATGTGGCTAACTACACAGTGCCAAGATTCTATCAAGGACACGAGAAGAAGGCCAAGAA  311
             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  -CTTGTGGCTAACTACACAGTGCCAAGATTCTATCAAGGACACGAGAAGAAGGCCAAGAA  353

Query  312  GTGGGGACAGGCCTTGCCTCTTAACAACCAGACGGTTTTTCAAGCGGTTTTGCCTAATGG  371
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct  354  GTGGGGACAGGCCTTGCCTTTTAACAACCAGACGGTTATTCAAGCGGTTTTACCTAATGG  413

Query  372  CTCGGCGATTTTTCGTGTGGAATTGAAGATGCAGGTAAAATACAAAGTCAT  422
            ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  414  CTCGGCGATTTTTCGTGTGGATTTGAAGATGCAGGTGAAATACAAAGTCAT  464


 Score =  259 bits (140),  Expect = 2e-68
 Identities = 174/190 (92%), Gaps = 3/190 (2%)
 Strand=Plus/Plus

Query  404  AGGTA-AAATACAAAGTC-ATTGTGAATCTTGAAGTCAACGAGGATGGAGCCACTAAAGT  461
            ||||| ||||  |||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct  481  AGGTACAAAT-TAAAGGCTAGTGTGAATCTTGAAGTCAACGAGGATGGAGCCACTAAAGT  539

Query  462  CAAGAACAAAGAGGATGGGATTAAAATGAAGATATCAGATTCTTCTCCGCGACGACTAAC  521
            |||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||
Sbjct  540  CAAGGACAAAGAGGATGGGATTAAGATGAAGATATCAGATTCGTCTCCACAACGACTAAC  599

Query  522  CTTTTTCCAACTTTGCTTTTCGATTATTTGTGTTTTGATGAATTGGCTCGTCTTTTTGGC  581
             ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct  600  ATTTTTCCAAGTTTGCTTTTCGATTATTTGTGTTTTGATGAATTGGCTCATCTTCTTGGC  659

Query  582  TATTTGTTAA  591
            |||| |||||
Sbjct  660  TATTCGTTAA  669


 Score =  217 bits (117),  Expect = 1e-55
 Identities = 138/148 (93%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  47   TCCTCTATGTATCGTTTCTTCTGGCTTTCTTTCTCTGGATTA-CTACTTTGGTCCACGAC  105
            ||||||||||||||||||| |||||||| | ||||||| ||| |||||||||||||| ||
Sbjct  59   TCCTCTATGTATCGTTTCTCCTGGCTTTATGTCTCTGG-TTATCTACTTTGGTCCACCAC  117

Query  106  ATACCTCGATGCTCAATCCATTACTTTTACATTCCTGTCCTAAACAAATCTCTCAATTCA  165
            |||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct  118  ATACCTAGATGCTCAATCCATTACTTTTACATTCCTGCCCTAAACAAATCCCTCATTTCA  177

Query  166  TCAGACAACACCACTCTCAACTTCATGG  193
            ||||||||||||||||||||||||||||
Sbjct  178  TCAGACAACACCACTCTCAACTTCATGG  205



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5