BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479588
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20620.1 | Symbols: | F-box family protein-related | chr3:7... 2239 0.0
> AT3G20620.1 | Symbols: | F-box family protein-related | chr3:7198454-7202489
REVERSE LENGTH=1751
Length=1751
Score = 2239 bits (1212), Expect = 0.0
Identities = 1580/1752 (90%), Gaps = 48/1752 (3%)
Strand=Plus/Plus
Query 1 AACACGACTTGTTTCTTCTTCT-CACAACACGTGTTCTTCAAATTCGCTCGTATTATTCT 59
||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 17 AACACGAATTGTTTCTTCTTCTCCA-AACACGTGTTCTTCAAATTCGCTCATATTATTCT 75
Query 60 CGATT-CC-C-aa-a-aaaaa-aa-a-a--aaaaaTTATAAAATCCCGAT-ATCAGAATC 108
||||| || | || | ||||| || | | |||||||||||||||||||| || ||||||
Sbjct 76 CGATTCCCACAAACAGAAAAAGAAGATACTAAAAATTATAAAATCCCGATAAT-AGAATC 134
Query 109 ATGAAATTGTTTCCTGATT-TGGGGGTTTTAATTGCGTTTAATCGGAATCTCTTGCCGTT 167
|||||||||||||| | || |||| ||||||||||||| |||||||||||||||||||||
Sbjct 135 ATGAAATTGTTTCC-GTTTATGGGTGTTTTAATTGCGTCTAATCGGAATCTCTTGCCGTT 193
Query 168 ATCTTCTAC-TACTTATGAGT--TCCAAAGAGGCACGACTAATTTCATGGATCA--ATG- 221
||| ||| | || | | | || | ||||||||||| ||| ||||||||||||| ||
Sbjct 194 ATCGTCTGCTTA-TCA-GGGTAAT-CAAAGAGGCACTACTGATTTCATGGATCATTGTGA 250
Query 222 -TG-A---CTGAGAGTTGGTGAATCAGCAAGCTTCTGTTGCAGAGCCTTAGCAACAGAAA 276
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 251 TTGAAGTTTTGAGAGTTGGTGAATCAGCAAGCTTCTGTTACAGAGCCTTAGCAACAGAAA 310
Query 277 GCAAACAGAAAATGGTCAAAACTCGTGCTCAGAGTATCAAGCGGATGAGTGTTGTAGATG 336
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 311 GCAAACAGAAAATGGTCAAAACTCGTGCTCAGCGTATCAAGCGGATGAGTGTTGTAGATG 370
Query 337 CACTTTGCATCCGGTCTCAGATCTCAGTCAAATCTACCCGGTATTGTAAGACAGTTAGTA 396
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 371 CACTTTGCATCCGGTCTCAGATCTCGGTCAAATCTGCCCGGTATTGTAAGACAGTTAGTA 430
Query 397 AGCACCTTGCAAAGCTACAGTTAGCAGAATCTGGAAAGAATTCATCATTGGTAGTCTGTC 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGCACCTTGCAAAGCTACAGTTAGCAGAATCTGGAAAGAATTCATCATTGGTAGTCTGTC 490
Query 457 CT-GCTATGGGGAAAACAATGAAGTTGTATTCGATGGATGCAAGGAGATGTAAACTTTCC 515
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 491 CTAG-TATGGGGAAAACAATGAAGTTGTATTCGATGGATGCAAAGAGATGTAAACTTTCC 549
Query 516 CTCCTCAGTACTATTGATCCATCTCAAAGAAGCCCTGAGGAGTTCATGTACATGATATCA 575
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 550 CTCCTCAGTACTATTGATCCATCTCAAAGAACCCCTGAGGTGTTCATGTACATGATATCA 609
Query 576 TCCTATAATGGGATCATCTGCTGTGTGAATATGATTTATGATGAAGACGTAGAAAACAAG 635
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCCTATAACGGGATCATCTGCTGTGTGAATATGATTTATGATGAAGACGTAGAAAACAAG 669
Query 636 TTCTGTGATCTCCAGATATGGATATGCAACCCT-TGTACAAGGGAGACTCTCCTTCTTCC 694
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 670 TTCTGTGATCTCCAGATATGGATATGCAACCCCAT-TACAAAGGAGACTCTCCTTCTTCC 728
Query 695 CCAAGGAACACCCTCGTTTGAGTTTGAGCCAAGCATTGGAGTAGCTTATGGCTCTGATGT 754
||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||
Sbjct 729 CCAAGGAACACCCTCATTTGAGTTTGAGCCTAGTATAGGAGTGGCTTATGGCTCTGATGT 788
Query 755 CAGTGACTATAGGATTTT-CCGTATATTCCGCACTGGAAAGATAATTCCTGAAGAAAGGG 813
|||||||| | | ||| |||||| || ||||||| |||||||||||||||||||| |
Sbjct 789 AAGTGACTACAA-AGTTTACCGTATTTTTTGCACTGGGAAGATAATTCCTGAAGAAAGAG 847
Query 814 GACCTGCGGAGGGATATTATTTTCAAGAAGGTCGGTATTTTACAAAATACAGTCACGT-T 872
||||||| ||||||| |||| ||||||||||||||| ||||||||||||| ||||| | |
Sbjct 848 GACCTGCAGAGGGATTTTATGTTCAAGAAGGTCGGTTTTTTACAAAATACGGTCAC-TCT 906
Query 873 TTAGCTTACGAATGCGAGGTTTATTCGTCCAGCACGGGTTCTTGGAAAAACATCGGCCCC 932
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 907 TTAGCCTATGAATGCGAGGTTTATTCGTCCAGCACGGGTTCTTGGAAAAACATTGGCACC 966
Query 933 GTGCCTTGTGTTCCTATGAGTTGTGGTCTTAGGCCATTCAGAAGAACTGGTCATATATTT 992
||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||| |||
Sbjct 967 GTGCCTTGTCTTCCTATGAGTTGTAGTCTTAGGCCATACAGAAGAACTGGACATATTTTT 1026
Query 993 GTCG-ATGGAAAAGTGTATTGGCTTGTTTCTTTAGATGGGCCTGGTAAGATCCTCTCAGT 1051
|||| | |||||||| || ||||| ||||||||||||| ||| |||||||| ||||||||
Sbjct 1027 GTCGGA-GGAAAAGTTTACTGGCTCGTTTCTTTAGATGCGCCAGGTAAGATTCTCTCAGT 1085
Query 1052 AGATTTGGAAGGGAGATTCGAGGTCATAAACTTGCCTGCATATCCAGATGGACTAAGAGA 1111
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1086 AGATTTGGAAGGGAAATTCGAGGTTATAAACTTGCCTGCATATGCAGATGGACTAAGAGA 1145
Query 1112 GGAAGAGAAGATCACAGAGGCAAGTCATTTGGTAAACCTGAAAGGTTCTCTCGGGTTGCT 1171
|| ||| |||| ||||| || ||||||||| ||||||||||||||||||| ||||||||
Sbjct 1146 AGACGAGCAGATTACAGAAGCTAGTCATTTGATAAACCTGAAAGGTTCTCTTGGGTTGCT 1205
Query 1172 TGTTATACAACCAGATAACATGGATCTATGGGTTTGGAAACACGACGGCCAGAAATATAG 1231
||| |||| ||||| ||||||||| | ||||||||||||||||||||| ||| ||||||
Sbjct 1206 CGTTCTACATCCAGAGAACATGGATGTCTGGGTTTGGAAACACGACGGCGAGAGATATAG 1265
Query 1232 TTGGGATATTGAATTGAGCGATGATGTTCCAATAAAAAATGACGAATTGATTATAGCCGT 1291
||||| | || |||| | |||| ||||||||||||| |||| ||||||||| |||||||
Sbjct 1266 TTGGGTTTTTCAATTTAAAGATGTTGTTCCAATAAAAGATGATGAATTGATTTTAGCCGT 1325
Query 1292 AACTGCATTCGATAACAAGATCATATGTGTGAATGATACACACTGGCGTGTATATGATAT 1351
||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1326 AACTGCATTAGATAACAAGATCATATGTGTGAATGAAACACATTGGCGTATATATGATAT 1385
Query 1352 GGAGACTAAAAAGTGGAAGAGAAGAAGGGGCCCTCGTACTGGATTTAGGAATCCTGCTAT 1411
||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| | |
Sbjct 1386 GGAGACTGAAAAGTGGAAGAGAAGAAAGAGCCCTCGTACTGGATTTAGGAATCCTGTTGT 1445
Query 1412 GTTCCCATTCACCGAAAGCGTTCTTCCATGTAATGGCGGTGTGAAGCAGTAGAAGGAAAC 1471
| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1446 GCTCCCATTCACCGAAAGCGTTCTTCCTTGTAACGGCGGTGTGAAACAGTAGAAGGAAAC 1505
Query 1472 AGCAACAGTGTCGATGGGATGCAGAGAATGTTGAATCTGAG--AGGTTATGTGTTTCTCT 1529
|||| ||| |||||| ||||| |||| |||||||| || | ||| |||||||||||||
Sbjct 1506 CGCAAGAGTATCGATGTGATGCGGAGATTGTTGAAT-TG-GTCAGGCTATGTGTTTCTCT 1563
Query 1530 TAGGAACCTTCATATTGGTTTCGGTTTTAAGACtttttttttgcttgtgtcagtttttgt 1589
||||||| |||||||||||||| |||||| |||| ||||| | | || ||||||||||
Sbjct 1564 TAGGAACTTTCATATTGGTTTCTGTTTTAGGACTATTTTTCTACA-GT--CAGTTTTTGT 1620
Query 1590 ctctcttttttCAATTTCAACTTGGTTTATGCAGTTTCATATTTTAAGACTTCATTGATA 1649
|||| |||| | ||||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 1621 CTCT-TTTTAAGATTTTCAACTTGGTTTATGCATTTTCTTATTTTAAGACTTCATTGAAA 1679
Query 1650 CTAAATAAGTTGTGGTTGCTTCGTCTCTCAACAAAGTTTTAATGTTATAAAAACCATTAA 1709
||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1680 CTAAATAAGCTGTGGTTGCTTTGTCTCTGGACAAAGTTTTAATGTTATAAAAACCATTAA 1739
Query 1710 TGTTCTTATGCT 1721
||||||||||||
Sbjct 1740 TGTTCTTATGCT 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5