BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479592
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20650.1 | Symbols: | mRNA capping enzyme family protein | ... 2001 0.0
> AT3G20650.1 | Symbols: | mRNA capping enzyme family protein
| chr3:7220799-7224090 REVERSE LENGTH=1633
Length=1633
Score = 2001 bits (1083), Expect = 0.0
Identities = 1187/1236 (96%), Gaps = 11/1236 (1%)
Strand=Plus/Plus
Query 34 TTGTAATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGGTCCTCCTCCTTCTTCCA 93
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 147 TTGTTATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCA 206
Query 94 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAAACCACAAAGAATT 153
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 207 GATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATT 266
Query 154 TTGCCCGGAAAGTTGCTGATCATTACAGTCGGAGAACTAACCAAACATTGGAAGAGCGAG 213
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 267 TTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAG 326
Query 214 AAGCTAGTCCCATCATCCATTTGAAGAAGCTTAACAATTGGATTAAAAGTGTGTTGATCC 273
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 327 AAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGATCC 386
Query 274 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATT 446
Query 334 TGATCAAATGGGATAAGGCGAGAATCGGGTACTATGTTGGAATCGATATTGCTGAAGGGT 393
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 447 TGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGT 506
Query 394 CGATTGAAGATTGTCGTACGCGTTATAATGGTGATGCAGACCATCATCAACGGCGTAAAA 453
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 507 CGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAA 566
Query 454 AGTTCAGTTTTCCGTCCCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 513
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGA 626
Query 514 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCAT 686
Query 574 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGCCCAG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 687 GGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGTCCAG 746
Query 634 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATaaaaaaaCTCAGAGAAG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATAAAAAAACTCAGAGAAG 806
Query 694 CTGAAGGTTTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAGTATTCCC 753
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 807 CTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCC 866
Query 754 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTATTTCATCTGGAGGATG 813
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 867 AAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAGGATG 926
Query 814 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCAGAAGAGT 873
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 927 CTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCGGAGGAGT 986
Query 874 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 ATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAA 1046
Query 934 AGCCAGAGTTTGTGGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAACAATGATC 993
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1047 AGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAGCAATGATC 1106
Query 994 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATCTATACCTCTCTTTTGTCTTGA 1053
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1107 AGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCTCTTTTGTCTTGA 1166
Query 1054 GGAAGAGGGGAGAACCAGATGGAGCTCGAAGGAGCGGACGGAGGAAGAATGGGAAAATGA 1113
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1167 GAAAGAGGGGAGAATCAGATGGAGCTCGAAGGAGCGGGCGGAGGAAGAATGGGAAAATGA 1226
Query 1114 ACTTATCGAAAGACGATGTTTTGTATATCGATAGCTGAAGTGTAAAAGAATGTTCCTTTT 1173
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1227 ACTTGTCGAAAGATGATGTTTTGTATATCGATAGCTGAAGTGTCAAAGAGTGTTTCTTTT 1286
Query 1174 A-TACACCAGAGTGTCTCAAGTCTCTGTTTTGGTCTCACTTCGTTCTCTTACGTTTTTGG 1232
| | | ||||| ||| || | | || |||||||||||||| ||||||||||||||
Sbjct 1287 ACT-CTT-AGAGTCTCT---GT-T-T-TT--GGTCTCACTTCGTTGTCTTACGTTTTTGG 1336
Query 1233 CCATTTGAATTGAGAGATTGTTTTACTTTCGAAAAA 1268
|||||||||||||||||||| ||||||| ||||||
Sbjct 1337 CCATTTGAATTGAGAGATTGCATTACTTTAGAAAAA 1372
Score = 128 bits (69), Expect = 1e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1268 AAGCCCAATAATATGATAGTCGTTGAACACTTATGTTTTCAAGTGTGTAGGCTTTGATAT 1327
||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1405 AAGCCAAATAATATTATAGTCGTTGAACACTTGTGTTTTCAAGTGTATAGGCTTTGATAT 1464
Query 1328 ACCATCAGGATGATGAACATG 1348
|||||||||||||||||||||
Sbjct 1465 ACCATCAGGATGATGAACATG 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5