BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479594
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20680.1 | Symbols: | Domain of unknown function (DUF1995) ... 1506 0.0
> AT3G20680.1 | Symbols: | Domain of unknown function (DUF1995)
| chr3:7230068-7231194 REVERSE LENGTH=1127
Length=1127
Score = 1506 bits (815), Expect = 0.0
Identities = 973/1049 (93%), Gaps = 11/1049 (1%)
Strand=Plus/Plus
Query 18 ATCAGCCATGGCTTCTTCGACTCTCTTCAAACTTAATTCACAGACTTTGAAAGCACTAAA 77
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct 25 ATCAGCCATGGCTTCTTCGACTCTCTTCAAACTCAATTCACAGACATTCAAAGCTCTAAA 84
Query 78 CCCTTCTCCCCCTTCGTTATCTCCTCCTAATTCCAGAATTTTCCATCTTCATTTCTCCAA 137
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 85 CCCATCTCCTCCTTCGTTATCTCCTCCCAATTCCAGAATTTTCCATCTTCATTTCTCCAA 144
Query 138 ATCACTCTCACAACAACAACATTCAAAGCTCAGCCACAAATCAACAACTActcgtttctt 197
|||||||| | |||||| ||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 145 ATCACTCT--C-ACAACAGCATTCAAAGCTCAACCACAAATCAACCACTACTCGTTTATT 201
Query 198 cgttcctctctgtttctctcttccttca----c--cttcttctcctccAATTTCCAAAGA 251
|| ||||||||||| ||||||||||||| | ||||||||||||| ||||||||||
Sbjct 202 CGCTCCTCTCTGTTCCTCTCTTCCTTCACCTTCTTCTTCTTCTCCTCCCCTTTCCAAAGA 261
Query 252 AGAAGCCATTCTTCAAGCCAAGACTTGTCTCCTTTCTTGTCTCATCAAACCCTTAAACAA 311
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 262 AGAAGCCATTAATCAAGCCAAAACTTGTCTCCTTTCATGTCTCATCAAACCCTTAAACAA 321
Query 312 CCCAAAACTCGCTTCCCCAAAACTCAGGAAGCTCAAACAACCAAGATTCCGTCTTGAAAT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CCCAAAACTCGCTTCCCCAAAACTCAGGAAGCTCAAACAACCAAGATTCCGTCTTGAAAT 381
Query 372 CCCAATCCTTGACGATGATTCTCCTTCGTCTCTCTCTCAGCTCGCTTTTTCGATCTTCCA 431
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 382 CCCAATCCTTGACGATGATTCTCCTTCGTCACTCTCTCAGCTCGCTTTCTCGATCTTTCA 441
Query 432 TGACTTACCCATCTCGAGAAGAGGCTCTAATGTCAAGCTTCTCTTCCTCTGGCCTGACCC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 442 TGACTTACCCATCTCGAGAAGAGGCTCTAATGTCAAGCTTCTCTTCCTCTGGCCTAACCC 501
Query 492 TTCATTCATCGATTCCGCCGTTAAAGCTTTCCGGTCAGACTCTGTTAACCACATTGCCAT 551
||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 502 TTCATTCATCGATCCCGCCGTTAAAGCTTTCCGGTCAGACTCTATCCACCACATTGCCAT 561
Query 552 GTCTCCTGTTTCAGACTCTGTTAACAA-AGCTCTGAGATCTGCTGACGTGGCGGTTTTCA 610
|||||| || ||||||||| |||| || ||||||||||||||||||||||||| | ||||
Sbjct 562 GTCTCCGGTCTCAGACTCTCTTAA-AACAGCTCTGAGATCTGCTGACGTGGCGATCTTCA 620
Query 611 TGGCTCCGGAGAAATCGCAGCTGGAGGATGTGAAGACGGCGAGTGAAGCttttttttCGA 670
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | | |
Sbjct 621 TGGCTCCGGAGAAATCGCAGCTGGAGGATGTTAAGACCGCGAGTGAAGCTTTTTCTACAA 680
Query 671 AACCTGTGGTGATGATCAATCCGAGATGGTTGTTTGAGGAAGAGAAAGGATTTGGTGATG 730
||||||| || |||||||||||||||||||||||||| ||||||||| | ||||| ||||
Sbjct 681 AACCTGTAGTAATGATCAATCCGAGATGGTTGTTTGAAGAAGAGAAAAGCTTTGGAGATG 740
Query 731 GCTTTATTGGTTCCTTTGAAGTGATTTATGCGTTCACAGGTTTAGAAGTGAGAGGAGTGT 790
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 741 GCTTTATTGGTTCCTTTGAAGTGATTTATGCGTTCACTGGCTTAGAAGTGAGAGGAGTGT 800
Query 791 TGAGTAAGAGAAAAGGAGTGATCTTTAAGTGTGTGAGAGATGGTGTTGTGAGTGGAGAGA 850
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 801 TTAGTAAGAGAAAAGGAGTGATCTTTAAGTGTGTAAGAGACGGTGTTGTGAGTGGAGAAA 860
Query 851 GATGGAATGTTCTTGTTGAAGAAGAAGAAGGTAATGGAACTTTGAAAGTGGTTTCACAGT 910
||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 861 GATGGAATGTTCTCGTTGAAGAAGAAGAAGGTAATGGTACTTTGAAAGTTGTTTCACAAT 920
Query 911 TCAACTCTCGGCCATCAATGGAAGAAGTTGAGCTTGTTCTGTATAATTTGATGGCTATGA 970
|||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 921 TCAATTCTCGACCATCAATCGAAGAAGTTGAGCTTGTTCTGTATAACTTGATGGCTATGA 980
Query 971 ATTCTCCTATCACCAAATCAGCTAAGTTTCTGAAAGATTTGGTTTCGAACATCACTGGGA 1030
|||||||||| |||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 981 ATTCTCCTATTACCAAATCAGCTAAGTTTCTTAGTGATTTGGTTTCAAATATCACTGGGA 1040
Query 1031 AGAAGTAATTTGTTAGGAGTTCAATGTGT 1059
||||||| |||||||||| ||||||||||
Sbjct 1041 AGAAGTAGTTTGTTAGGACTTCAATGTGT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5