BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479595
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20700.1 | Symbols: | F-box associated ubiquitination effec... 1074 0.0
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 224 1e-57
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 76.8 3e-13
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 73.1 4e-12
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 63.9 2e-09
> AT3G20700.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:7233525-7234505 REVERSE LENGTH=981
Length=981
Score = 1074 bits (581), Expect = 0.0
Identities = 703/763 (92%), Gaps = 4/763 (1%)
Strand=Plus/Plus
Query 1 ATGCGATCTACTTGCAAAAAGTGGAACGTTTTAACCAAAGATCAGAGGTTTGCAAAAAAG 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGATCTACTTGCAAAAAGTGGTACGTTTTAACCAAAGATCAGAGGTTTGCAAAAAAA 60
Query 61 CGAGGAAAAGAGTTTCTGATGATAATGAATCATAGGGTGTATCTGATTGGCGTCAATCTC 120
|| |||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 61 CGGGGAAAAGAGTTTCTAATGATAATGAATCGTAGGGTATATTTGATTGGCGTCAATCTC 120
Query 121 CACGACAACATTGATCTATCTATTAAGTGTAAAGGTAAACTTATTAGCAGAGACAAAACA 180
||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 121 CACAACAACATTGATCTATCTATAAAGTGTAGAGGTAGACTTATTAGCAGAGACGAAACA 180
Query 181 GGTGAGGAATTATATGTGTCTCGAGTCTTTCACTGCAATGGTTTATTGTTATGCGTATCA 240
| | ||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 181 GCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCA 240
Query 241 GGAAAAACTAGTCATGATACTAGGCTTGTGGTTTGTAATCCGTATTTGGGG--AAACCAA 298
|||||||||| | |||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 241 GGAAAAACTATTGATGACACTAGGCTTGTGGTTTGTAACCCGTA--TGGGGTAAAACCAA 298
Query 299 AATGGGTCAAACCCAAAAATAATTATGGGATACTAGACAAATTTGCTCTCGGATATGACA 358
||||| |||| |||||| ||||||| |||| | |||||| |||| ||||||||| |||||
Sbjct 299 AATGGATCAATCCCAAAGATAATTACGGGAGATTAGACATATTTTCTCTCGGATTTGACA 358
Query 359 AATTATGCGGTAGCTACAAAATCTTGAGGATTTACGATTTCGATAATAAACTAGAAATCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 AATTATGCGGTAGCTACAAAATCTTGAGGATTTACGATTTCGATAATAAACTCCAAATCT 418
Query 419 ACGAATTGAGCTCTAATTCATGGATGATTCCTAGTGACACTTTTGGACGGGATAAAGAGT 478
|||| |||||||||||||||||||||||||| || |||||| |||||||||||| |||||
Sbjct 419 ACGATTTGAGCTCTAATTCATGGATGATTCCAAGAGACACTCTTGGACGGGATATAGAGT 478
Query 479 GTATGCAACATGGCGTGTCTTCCAAGGGAAATACTTATTGGTGTGCTAGAGATAAAGAAT 538
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 479 ATATGCAAAATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAGAGATAAACAAT 538
Query 539 CACAATATTGTAATCTGTTCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGCCTGC 598
||||||||||| | |||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 539 CACAATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCGGACCGCGTCTAC 598
Query 599 CACTGCCCTTCAATGGAACTTATGTGTCTCTATCTACGGTTAAAGAAGAGCAGCTTACGG 658
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
Sbjct 599 CACTGCCCTTCAATGGAGCTTATGTGTCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAG 658
Query 659 TGTTATTACAGCCGTCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGC 718
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGTTATTTCAGCCATCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGC 718
Query 719 CTGATGAAGTGTCGTGGAGCATCTTCTTGAAAGTTGAAATGAA 761
|||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 719 CTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGAAATGAA 761
Score = 130 bits (70), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 763 AAATTCGCAGTTGTTTTTGATAAAGACAAGGGAAAGGGGTTTAAAACCATTTACAACATA 822
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 805 AAATTCGCAGTTGTTTTTGATAAAGACAAGGCAAAGGGGTTTAAAACCAATTACGACATA 864
Query 823 GCTTACGTCATTGGAGAGAATG 844
||||||||||||||||| ||||
Sbjct 865 GCTTACGTCATTGGAGAAAATG 886
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 224 bits (121), Expect = 1e-57
Identities = 499/669 (75%), Gaps = 76/669 (11%)
Strand=Plus/Plus
Query 131 TTGATCTATCTATTAAGTGTAAAGG-TAAACTTATTAGCAGAGACAAAACAGGTGAGGAA 189
|||||||||||||| || | |||| |||| || ||||||||||||||| || ||| |
Sbjct 242 TTGATCTATCTATTCAG-CTTAAGGCTAAAATTGTTAGCAGAGACAAAAAAGATGATTTA 300
Query 190 TTATATGTGTCTCGAGTCTTTCACTGCAATGGTTTATTGTTATGCGTATCAGGAAAAACT 249
|| | |||| |||| |||||||||| ||| |||| ||||||||| | || ||
Sbjct 301 TTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTA-C-GG--GAA-- 354
Query 250 AGTCATGATACTAGGCTTGTGG-TTTGTAATCCGTATTTGGGGA-AACCAAAATGGGTCA 307
| | | | | |||||||| |||| || ||||| ||||||| || ||||| || ||
Sbjct 355 A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTA-TTGGGGACAAACAAAACGGATC- 402
Query 308 AACCCAA-AAATAATTAT-GGGATAC-TAGACAAATTTGCTCTCGGATATGACAAAT-TA 363
| |||| | | || | ||| | | | |||| | |||||||||||| ||||||| |
Sbjct 403 ATGCCAAGACCTCCTT-TCGGG-TGCTTCGACAGGTATGCTCTCGGATACGACAAATCCA 460
Query 364 TGCGGTAGCTACAAAATCTTGAGGATTTACGAT-T--TCGATAATAAACTAGAA-ATCTA 419
|||||||| |||||||| ||||| ||| || | | | | ||||| || || |||||
Sbjct 461 -GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTCAACCAAAATAACCT-CAATATCTA 518
Query 420 CGAATTGAGCTCTAATTCATGGATGATTCCTAG-TGACACTTTTGGACGGGATAAAGAGT 478
||| |||||||||| |||||||||||||||| | || |||| ||| ||| |||| ||||
Sbjct 519 CGATTTGAGCTCTAGTTCATGGATGATTCCT-GATGGCACTCTTGAACGAGATATGGAGT 577
Query 479 GTATGCAACATGGCGTGTCTTCCAAGGGAAATACTTATTGGTGTGCTAGAGATAAAGAAT 538
|||| |||| |||||||||| || ||| ||||||| |||| ||||| |||||| ||||
Sbjct 578 ATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAAT 637
Query 539 CACA-ATA-TTGTAATCTGTTCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGC-C 595
|| | | | | ||| | | || |||||||||||||||||||||||||| ||| | | | |
Sbjct 638 CA-ATAGACTGGTACT-TATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACAC-CTC 694
Query 596 TGCCACTGCCC-TT--CAAT---GG--A-ACT-T------A---TGT--GTCTCTATCTA 634
|||| |||||| || ||| || | ||| | | | | ||||||||||
Sbjct 695 TGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTG 754
Query 635 CGGTTAAAGAAGAGCAGCTTACGGTGTTATTACAGCCGTCGGATAAATCTGAGATAGAGA 694
| ||||||||||| ||||| |||||||| | | | |||| | | | || | |
Sbjct 755 CTCTTAAAGAAGAGAAGCTTGCGGTGTTACT--A----TGGGAT--A-C--A-ATGGTTA 802
Query 695 TTTGGGTTACGAACAAGATTGAGCCTGATGAAGTGTCGTGGAGCATCTTCTTGAAAGTTG 754
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 803 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTG 862
Query 755 AAATG-AAC 762
| ||| |||
Sbjct 863 ATATGGAAC 871
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 76.8 bits (41), Expect = 3e-13
Identities = 146/192 (76%), Gaps = 25/192 (13%)
Strand=Plus/Plus
Query 557 TCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGCCTGCCACTGCCCTTCAATGGAA 616
||||||||||||||||||||||||||||||| |||| || || || || | || |
Sbjct 695 TCTGTTTTGATTTTACAAGAGAGAGATTCGGGCCGCTTCTCCCTCTACCGTGCAGCG--- 751
Query 617 CT-TA--TGTGTCTCTATCTACG-GTTAAAGAAGAGCAGCTTACGG-TGTTATTACAGCC 671
|| || |||| || ||||| | |||||||||||| ||||| | | | ||||| ||||
Sbjct 752 CTGTAGATGTGACTTTATCTT-GTGTTAAAGAAGAGAAGCTTGCAGCT-TTATTTCAGC- 808
Query 672 GTCGGATAAATCTGAGATAGAGATTTGGGTTACGAAC-AAGATTGA-GCCTGATGAA-G- 727
|| || |||||| | ||||| ||| |||||| | |||||||| ||| || || |
Sbjct 809 GT----TA--TCTGAGTTGGAGATATGGATTACGA-CTAAGATTGATGCC-GA--AACGG 858
Query 728 TGTCGTGGAGCA 739
||||||||||||
Sbjct 859 TGTCGTGGAGCA 870
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 73.1 bits (39), Expect = 4e-12
Identities = 92/116 (79%), Gaps = 9/116 (8%)
Strand=Plus/Plus
Query 490 GGCGTGTCT-TCCAAGGGAAATACTTATTGGTGTGCTAGAG-ATAAAGAATCACAAT-AT 546
||||| ||| || ||||| || ||||| ||||||||||||| | ||| | ||| || |
Sbjct 619 GGCGTCTCTCTCAAAGGG-AACACTTACTGGTGTGCTAGAGAAGAAA-ACTCA-GATGGT 675
Query 547 TGTAATC-TGT--TCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGCCTGCC 599
| |||| | | |||||||||||||||||||||||||||| || |||| |||||
Sbjct 676 TACAATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTCTGCC 731
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 63.9 bits (34), Expect = 2e-09
Identities = 44/49 (90%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 557 TCTGTTTTGATTTTACAAGAGAGAGATTCGGACCGCGCCTGCCACTGCC 605
|||||||||||||||||||||||||||| ||||||| || || |||||
Sbjct 1169 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGCC 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5