BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479597
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 1328 0.0
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 464 8e-130
AT3G20700.1 | Symbols: | F-box associated ubiquitination effec... 281 8e-75
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 80.5 3e-14
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 73.1 5e-12
AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 69.4 7e-11
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 65.8 9e-10
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 1328 bits (719), Expect = 0.0
Identities = 997/1121 (89%), Gaps = 59/1121 (5%)
Strand=Plus/Plus
Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60
Query 61 AAATACCTGAGAGCAGTGA-GATCTACTTGCAAAAATTGGAACGATATATCCAAAACTCG 119
||||||||||||||| | | |||||||||||||||||||| ||||| |||| |||| |||
Sbjct 61 AAATACCTGAGAGCAAT-ACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATCG 119
Query 120 GAGCTTTGCGAATAA-ACACATCGACAAAGCAACCGTATCAGGGGAAAAAGAGTTTCTGA 178
||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||
Sbjct 120 GAGCTTTGCGAATAAGA-ACATCGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTGA 178
Query 179 TGATCACAAAATTTAATGTTTTTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 TGATCACACAATTTAATGTTTTTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238
Query 239 A-TGTTGATCTATCTATAGAGCTTAAAGG-TAAACTTGTTAGCAGAGACAAAACAGATGA 296
| ||||||||||||| ||||||| || |||| |||||||||||||||||| ||||||
Sbjct 239 GCT-TTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAAAGATGA 296
Query 297 TTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCACGGGAAAA 356
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 TTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTACGGGAAAA 356
Query 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAATGGATCATGCCAAGACCTCC 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGATCATGCCAAGACCTCC 416
Query 417 TTTCGGGTGCT-CAGACAGGTATGCTCTCGGCTACGACAAATCCAGCGGTAGCCACAAAA 475
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 417 TTTCGGGTGCTTC-GACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACAAAA 475
Query 476 TCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGTATACGATTTGAGCTCTAGTT 535
||||||||||||||||||| |||||||| |||||| || | |||||||||||||||||||
Sbjct 476 TCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCAATATCTACGATTTGAGCTCTAGTT 535
Query 536 CATGGATGGTTCCTGATGATGTCACTCTTGAAAGGGATAT--A-TATATGCAACAAGGCG 592
|||||||| ||||||||| | |||||||||| | ||||| | |||||| |||||||||
Sbjct 536 CATGGATGATTCCTGATG--G-CACTCTTGAACGAGATATGGAGTATATGAAACAAGGCG 592
Query 593 TGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA-TGGTTAC 651
|||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||| ||
Sbjct 593 TGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAATCAATAGACTGGT-AC 651
Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGCCTCAGCCC 711
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACA------CCTCTGCCTCTGCCC 705
Query 712 TT--G-AATGAAGGTTATGCCCTATACAAAGGTTATGCAA--CTCTATCTG-TAGTTACA 765
|| | |||||||||||| | ||| ||||||||||| || ||||||||| | ||| |
Sbjct 706 TTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT--AAGTCTCTATCTGCTC-TTAAA 762
Query 766 GAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAACGGTTATTTGGGTTACGAAC 825
|||||||||||||| |||||| || |||||||||| |||||||||||||||||||
Sbjct 763 GAAGAGAAGCTTGCGGTGTTACTA------TGGGATACAATGGTTATTTGGGTTACGAAC 816
Query 826 AAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTAAAACTTGATATGATAATGGAA 885
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 817 AAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG-----G-AA 870
Query 886 CCAAAG-ATTCAT---CACTATCAGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 941
|||| | ||| || | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 871 CCAA-GTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 929
Query 942 TGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCCGCCTTGGATGTTTAAAACCATTTA 1001
||| ||||| ||||||| | | |||| | || | | |||||| ||| ||| |||
Sbjct 930 TGTGTTTGAGAAAGACA--G-CTCGTCA--T-GGTCA--T-GGATGTATAACCCCAATTA 980
Query 1002 CAACAGAGCTTACATCGCTGGAGAGAATGGTTATTTCAGAAGTGTGGATCTTCTTAAATC 1061
||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 981 CAACAAAGCTTACATAGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATCTTCTTAAATC 1040
Query 1062 TCCAAACACACGACAACTTGGCCGCCTTGTGTGCTCTTATG 1102
||||||||||| ||| ||||||| ||||||||||| ||||
Sbjct 1041 TCCAAACACACTACAGCTTGGCCATCTTGTGTGCTCATATG 1081
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 464 bits (251), Expect = 8e-130
Identities = 705/911 (77%), Gaps = 84/911 (9%)
Strand=Plus/Plus
Query 4 ATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTTAA 62
|||||||||||||||||||| |||||||| ||||||||||||||||||||| | | | |
Sbjct 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59
Query 63 ATACCTGAGAGCAGTGAGATCTACTTGCAAAAATTGGAACGATATATCCAAA-ACTCGGA 121
| ||||| ||||| |||||| ||||||||| ||||||| | || ||||| | | |||
Sbjct 60 GTTTATGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGA-TAGGA 118
Query 122 GCTTTGCGAATAAACACAT-CGACAA-AGCAACCGTATCAGGGGAAAAAGAGTTTCTGAT 179
||||| | ||||| |||| || ||| | | ||| || |||||||| ||||||||||||
Sbjct 119 GCTTTACAAATAAGTACATCCG-CAATA-TAGCCGCATTAGGGGAAAGAGAGTTTCTGAT 176
Query 180 GATCACA-AAATTTAATGTTT-TTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAAC 237
||||| | |||||| | ||| || ||| ||||||||||||||| | | ||| ||||||
Sbjct 177 GATCA-AGGAATTTAGTATTTATT-TGGTAGGCGTCAATCTCCATGGTATTCAAAACAAC 234
Query 238 AA-TGTTGATCTATCTATAGAGCTTAAAGGTAAACTTGTTAGCA-GAGACAAAACAGA-T 294
|| | ||||||| |||||||| ||||||||||||||| |||||| | ||||| ||| | |
Sbjct 235 AACT-TTGATCTCTCTATAGAACTTAAAGGTAAACTTATTAGCATG-GACAATACA-ATT 291
Query 295 --GATTTATTCCACAAATCTCAAGTCATTCACTGCAACGG-TGTATTTTTATGCG---CA 348
|| |||| | ||||||| || |||||||||| || | |||||||||| | ||
Sbjct 292 CGGA--GATTCTGTATATCTCAAATCTTTCACTGCAATGGCT-TATTTTTATGTGTTTCA 348
Query 349 C-----G----GGAAAAAATGCTTGTGGTTTTGAACCCGTATTG-GGGACAAACAAAATG 398
| | ||| || | ||||||||||| |||||||||||| || || ||| |||
Sbjct 349 CAAAAAGACATGGATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCGA-AACCAAGATG 407
Query 399 GATCATGCCAAGACCTCCTT-TCGG-GTGCTCAGACAGGTATGCTCTCGGCTACGACAAA 456
||||| || || | || | || | | ||||||| ||||||||| || ||||||
Sbjct 408 GATCAAACCCAGTTATAATTATAGGACAG-T-TGACAGGTTTGCTCTCGGATATGACAAA 465
Query 457 TCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGT 515
| || | ||||||||||||||| |||||||||| |||| ||||| ||| |||||||| |
Sbjct 466 T-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAAT 524
Query 516 ATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGGG--AT 573
|||||||||||||| | |||||||| ||||||| | |||||||||||||| ||| ||
Sbjct 525 CTACGATTTGAGCTCGAATTCATGGAGGGTTCCT-A--ATGTCACTCTTGAACGGGATAT 581
Query 574 A-TATATATGCAACAAGGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGA 632
| |||||||||||| |||||||||||||| | | | |||||||||||||||| |||| |
Sbjct 582 AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAA 641
Query 633 GGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGT 691
|| ||| | | || | ||||| || | |||||||||||||||||||||||||||||||
Sbjct 642 AGAATCAGA-AAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGC 700
Query 692 GTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATGCAACTC 751
|| ||||| | | |||||| | |||| || || || | | | | | ||
Sbjct 701 GTCTGCCT-T---T--GCCCTTCA-TGAA--TT-TGG---ATG-AT-G-TG-T-C---TC 739
Query 752 TATCTGTAGTTACAGAAGAGAAGCTTGCTG-TGTTATTACAGCGGTGGGATACAAC-G-G 808
||||||| || | ||||||||||||||| | |||||||| |||||||||||||| | |
Sbjct 740 TATCTGTGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAAAGCGGTGGGATACATGTGAG 798
Query 809 TT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTA 864
| | ||||||| ||| ||||||||||||| |||| |||| ||||||| ||||||
Sbjct 799 GTGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTA 855
Query 865 AAACTTGATAT 875
||| ||| |||
Sbjct 856 AAAGTTGGTAT 866
> AT3G20700.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:7233525-7234505 REVERSE LENGTH=981
Length=981
Score = 281 bits (152), Expect = 8e-75
Identities = 691/933 (74%), Gaps = 110/933 (12%)
Strand=Plus/Plus
Query 233 ACAACAATGTTGATCTATCTATAGAGCT-TAAAGGTAAACTTGTTAGCAGAGACAAAACA 291
||||||| |||||||||||||| || | || ||||| |||| ||||||||||| |||||
Sbjct 122 ACAACAACATTGATCTATCTATAAAG-TGTAGAGGTAGACTTATTAGCAGAGACGAAACA 180
Query 292 GATGATTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCA-C- 349
| | | |||| | ||||||||| |||||||||| ||| |||| |||| || | |
Sbjct 181 GCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCA 240
Query 350 GG--GAA--A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTATTGGGG-ACAAA-CA 393
|| || | | | | | |||||||| |||| |||||||| ||||| | ||| ||
Sbjct 241 GGAAAAACTATTGATGACACTAGGCTTGTGG-TTTGTAACCCGTA-TGGGGTA-AAACCA 297
Query 394 AAATGGATC-ATGCC-AAGACCTCCTTTCGGGTGCTCAGACAGGTATGCTCTCGGCTACG 451
||||||||| || || |||| | || |||| | | ||||| | | ||||||| | |
Sbjct 298 AAATGGATCAATCCCAAAGA--TAATTACGGGAGATTAGACATATTTTCTCTCGGATTTG 355
Query 452 ACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTC 510
|||||| | |||||||| |||||||| ||||| ||| || | || | | || || |||
Sbjct 356 ACAAAT-TATGCGGTAGCTACAAAATCTTGAGGATTTACGAT-TT--CGATAATAAACTC 411
Query 511 GATGTATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGG 570
| | |||||||||||||||| |||||||||| |||| | || | |||||||| | ||
Sbjct 412 CAAATCTACGATTTGAGCTCTAATTCATGGATGATTCC--AAGA-GACACTCTTGGACGG 468
Query 571 GATAT--A-TATATGCAACAA-GGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAA 626
||||| | ||||||||| || |||||||||| |||| | ||||||| |||| |||||
Sbjct 469 GATATAGAGTATATGCAA-AATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAG 527
Query 627 AGATGAGGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTG 685
|||| | | ||| | | || ||| || || ||||||||||||||||| |||||||| |
Sbjct 528 AGATAAACAATCACA-ATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCG 586
Query 686 GACCGTGTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATG 745
|||| || ||| || | |||||| ||| || | | || | | | ||
Sbjct 587 GACC------GCGTCTACCACTGCCCTTCAAT---GG--A-G--CT-T----A---TGTG 624
Query 746 CAACTCTATCTGTAGTTACAGAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAA 805
||||||||| |||| ||||||| ||||||| |||||||| |||| | ||||| ||
Sbjct 625 --TCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATA-AA 681
Query 806 -C-G-G-T---TATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATC 858
| | | | ||||||||||||||||||||||||||||| | ||||| |||||| ||
Sbjct 682 TCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTC 741
Query 859 TTCTTAAAACTTGATATGATAA-TGGAACCAAAGATTCATCACTATCAGAATTTCTTCAT 917
||||| ||| |||| |||| || | | | | ||| | || | ||||||||| ||
Sbjct 742 TTCTTGAAAGTTGAAATGA-AACT--A-CGT--G-TTC-TGTCT-TG-GAATTTCTTGAT 791
Query 918 TGACGAGGAAAAGAAAGTCGCAGTTGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCC 977
|||| ||||||||||| |||||||||||||||| |||||||| | || || ||
Sbjct 792 TGACAAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGACAAGG-CA----AA---GG-- 841
Query 978 GCCTTGGATGTTTAAAACCATTTACAACAGAGCTTACATCGCTGGAGAGAATGGTTATTT 1037
| | | || ||||||| |||| ||| ||||||| || |||||| ||||||||||
Sbjct 842 G----G--T-TT-AAAACCAATTACGACATAGCTTACGTCATTGGAGAAAATGGTTATTA 893
Query 1038 CAGAAGTGTGGATCTTCTTAAATCTCCAAACACACGACAACTTGGCCGCCTTGTGTGCTC 1097
|||||| |||||||| | | |||||||||||| || || ||| |||| |||||| ||
Sbjct 894 CAGAAGAGTGGATCTCCGTGAATCTCCAAACAAAC--CA-CTTTGCCGTATTGTGT-CTT 949
Query 1098 -TTATGTTCCAAGTTCTATG-AAAGTCAAGTAA 1128
|||||||||||||| | || ||| || |||||
Sbjct 950 GTTATGTTCCAAGTTGTGTGCAAA-TCGAGTAA 981
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGC 703
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 740 TGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGC 785
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 73.1 bits (39), Expect = 5e-12
Identities = 98/124 (79%), Gaps = 13/124 (10%)
Strand=Plus/Plus
Query 586 CAAGGCGTGTCT-TTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA 644
|||||||| ||| | |||||| | |||||||||| ||||| ||| || | || |||
Sbjct 616 CAAGGCGTCTCTCTCAAAGGGA-ACACTTACTGGTGTGCTAGAGAAGAAAACTC---AGA 671
Query 645 TGGTTAC--T--TAT--TATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGC 697
||||||| | ||| | ||||||||||||||||||||||||||||| ||| || |||
Sbjct 672 TGGTTACAATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGC-TTCTGC 730
Query 698 CTCT 701
||||
Sbjct 731 CTCT 734
> AT5G41494.1 | Symbols: | pseudogene of F-box family protein
| chr5:16602589-16603438 FORWARD LENGTH=850
Length=850
Score = 69.4 bits (37), Expect = 7e-11
Identities = 46/50 (92%), Gaps = 2/50 (4%)
Strand=Plus/Plus
Query 656 TATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGCCTCTGCC 704
||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 308 TATGTTTTGATTTTACAAGAGAGAGATTTAGACCGC-TTCTGCCTCTGCC 356
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 65.8 bits (35), Expect = 9e-10
Identities = 44/48 (92%), Gaps = 2/48 (4%)
Strand=Plus/Plus
Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGCCTCTGCC 704
||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 1171 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGC-TTCTACCTCTGCC 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5