BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479597 Length=1128 Score E Sequences producing significant alignments: (Bits) Value AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 1328 0.0 AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 464 8e-130 AT3G20700.1 | Symbols: | F-box associated ubiquitination effec... 281 8e-75 AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 80.5 3e-14 AT4G33290.1 | Symbols: | F-box and associated interaction doma... 73.1 5e-12 AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 69.4 7e-11 AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 65.8 9e-10 > AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999 REVERSE LENGTH=1089 Length=1089 Score = 1328 bits (719), Expect = 0.0 Identities = 997/1121 (89%), Gaps = 59/1121 (5%) Strand=Plus/Plus Query 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTT 60 Query 61 AAATACCTGAGAGCAGTGA-GATCTACTTGCAAAAATTGGAACGATATATCCAAAACTCG 119 ||||||||||||||| | | |||||||||||||||||||| ||||| |||| |||| ||| Sbjct 61 AAATACCTGAGAGCAAT-ACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATCG 119 Query 120 GAGCTTTGCGAATAA-ACACATCGACAAAGCAACCGTATCAGGGGAAAAAGAGTTTCTGA 178 ||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| Sbjct 120 GAGCTTTGCGAATAAGA-ACATCGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTGA 178 Query 179 TGATCACAAAATTTAATGTTTTTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 179 TGATCACACAATTTAATGTTTTTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACA 238 Query 239 A-TGTTGATCTATCTATAGAGCTTAAAGG-TAAACTTGTTAGCAGAGACAAAACAGATGA 296 | ||||||||||||| ||||||| || |||| |||||||||||||||||| |||||| Sbjct 239 GCT-TTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAAAGATGA 296 Query 297 TTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCACGGGAAAA 356 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 297 TTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTACGGGAAAA 356 Query 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAATGGATCATGCCAAGACCTCC 416 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 357 AATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGATCATGCCAAGACCTCC 416 Query 417 TTTCGGGTGCT-CAGACAGGTATGCTCTCGGCTACGACAAATCCAGCGGTAGCCACAAAA 475 ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 417 TTTCGGGTGCTTC-GACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACAAAA 475 Query 476 TCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGTATACGATTTGAGCTCTAGTT 535 ||||||||||||||||||| |||||||| |||||| || | ||||||||||||||||||| Sbjct 476 TCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCAATATCTACGATTTGAGCTCTAGTT 535 Query 536 CATGGATGGTTCCTGATGATGTCACTCTTGAAAGGGATAT--A-TATATGCAACAAGGCG 592 |||||||| ||||||||| | |||||||||| | ||||| | |||||| ||||||||| Sbjct 536 CATGGATGATTCCTGATG--G-CACTCTTGAACGAGATATGGAGTATATGAAACAAGGCG 592 Query 593 TGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA-TGGTTAC 651 |||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||| || Sbjct 593 TGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAATCAATAGACTGGT-AC 651 Query 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGCCTCAGCCC 711 |||||||||||||||||||||||||||||||||||| | |||||||||| |||| Sbjct 652 TTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACA------CCTCTGCCTCTGCCC 705 Query 712 TT--G-AATGAAGGTTATGCCCTATACAAAGGTTATGCAA--CTCTATCTG-TAGTTACA 765 || | |||||||||||| | ||| ||||||||||| || ||||||||| | ||| | Sbjct 706 TTTAGTAATGAAGGTTATACTCTACACAAAGGTTAT--AAGTCTCTATCTGCTC-TTAAA 762 Query 766 GAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAACGGTTATTTGGGTTACGAAC 825 |||||||||||||| |||||| || |||||||||| ||||||||||||||||||| Sbjct 763 GAAGAGAAGCTTGCGGTGTTACTA------TGGGATACAATGGTTATTTGGGTTACGAAC 816 Query 826 AAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTAAAACTTGATATGATAATGGAA 885 ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 817 AAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATG-----G-AA 870 Query 886 CCAAAG-ATTCAT---CACTATCAGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 941 |||| | ||| || | |||| |||||||||||||||||||||||||||||||||||| Sbjct 871 CCAA-GTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGT 929 Query 942 TGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCCGCCTTGGATGTTTAAAACCATTTA 1001 ||| ||||| ||||||| | | |||| | || | | |||||| ||| ||| ||| Sbjct 930 TGTGTTTGAGAAAGACA--G-CTCGTCA--T-GGTCA--T-GGATGTATAACCCCAATTA 980 Query 1002 CAACAGAGCTTACATCGCTGGAGAGAATGGTTATTTCAGAAGTGTGGATCTTCTTAAATC 1061 ||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 981 CAACAAAGCTTACATAGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATCTTCTTAAATC 1040 Query 1062 TCCAAACACACGACAACTTGGCCGCCTTGTGTGCTCTTATG 1102 ||||||||||| ||| ||||||| ||||||||||| |||| Sbjct 1041 TCCAAACACACTACAGCTTGGCCATCTTGTGTGCTCATATG 1081 > AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | chr3:7235948-7237084 REVERSE LENGTH=1137 Length=1137 Score = 464 bits (251), Expect = 8e-130 Identities = 705/911 (77%), Gaps = 84/911 (9%) Strand=Plus/Plus Query 4 ATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTTAA 62 |||||||||||||||||||| |||||||| ||||||||||||||||||||| | | | | Sbjct 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59 Query 63 ATACCTGAGAGCAGTGAGATCTACTTGCAAAAATTGGAACGATATATCCAAA-ACTCGGA 121 | ||||| ||||| |||||| ||||||||| ||||||| | || ||||| | | ||| Sbjct 60 GTTTATGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGA-TAGGA 118 Query 122 GCTTTGCGAATAAACACAT-CGACAA-AGCAACCGTATCAGGGGAAAAAGAGTTTCTGAT 179 ||||| | ||||| |||| || ||| | | ||| || |||||||| |||||||||||| Sbjct 119 GCTTTACAAATAAGTACATCCG-CAATA-TAGCCGCATTAGGGGAAAGAGAGTTTCTGAT 176 Query 180 GATCACA-AAATTTAATGTTT-TTCGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAAC 237 ||||| | |||||| | ||| || ||| ||||||||||||||| | | ||| |||||| Sbjct 177 GATCA-AGGAATTTAGTATTTATT-TGGTAGGCGTCAATCTCCATGGTATTCAAAACAAC 234 Query 238 AA-TGTTGATCTATCTATAGAGCTTAAAGGTAAACTTGTTAGCA-GAGACAAAACAGA-T 294 || | ||||||| |||||||| ||||||||||||||| |||||| | ||||| ||| | | Sbjct 235 AACT-TTGATCTCTCTATAGAACTTAAAGGTAAACTTATTAGCATG-GACAATACA-ATT 291 Query 295 --GATTTATTCCACAAATCTCAAGTCATTCACTGCAACGG-TGTATTTTTATGCG---CA 348 || |||| | ||||||| || |||||||||| || | |||||||||| | || Sbjct 292 CGGA--GATTCTGTATATCTCAAATCTTTCACTGCAATGGCT-TATTTTTATGTGTTTCA 348 Query 349 C-----G----GGAAAAAATGCTTGTGGTTTTGAACCCGTATTG-GGGACAAACAAAATG 398 | | ||| || | ||||||||||| |||||||||||| || || ||| ||| Sbjct 349 CAAAAAGACATGGATAATAGGCTTGTGGTTTGGAACCCGTATTGTTCGA-AACCAAGATG 407 Query 399 GATCATGCCAAGACCTCCTT-TCGG-GTGCTCAGACAGGTATGCTCTCGGCTACGACAAA 456 ||||| || || | || | || | | ||||||| ||||||||| || |||||| Sbjct 408 GATCAAACCCAGTTATAATTATAGGACAG-T-TGACAGGTTTGCTCTCGGATATGACAAA 465 Query 457 TCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTCGATGT 515 | || | ||||||||||||||| |||||||||| |||| ||||| ||| |||||||| | Sbjct 466 T-CATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTCGAAAT 524 Query 516 ATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGGG--AT 573 |||||||||||||| | |||||||| ||||||| | |||||||||||||| ||| || Sbjct 525 CTACGATTTGAGCTCGAATTCATGGAGGGTTCCT-A--ATGTCACTCTTGAACGGGATAT 581 Query 574 A-TATATATGCAACAAGGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAAAGATGA 632 | |||||||||||| |||||||||||||| | | | |||||||||||||||| |||| | Sbjct 582 AGTATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAGATAA 641 Query 633 GGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGACCGT 691 || ||| | | || | ||||| || | ||||||||||||||||||||||||||||||| Sbjct 642 AGAATCAGA-AAATTGATACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGACCGC 700 Query 692 GTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATGCAACTC 751 || ||||| | | |||||| | |||| || || || | | | | | || Sbjct 701 GTCTGCCT-T---T--GCCCTTCA-TGAA--TT-TGG---ATG-AT-G-TG-T-C---TC 739 Query 752 TATCTGTAGTTACAGAAGAGAAGCTTGCTG-TGTTATTACAGCGGTGGGATACAAC-G-G 808 ||||||| || | ||||||||||||||| | |||||||| |||||||||||||| | | Sbjct 740 TATCTGTGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAAAGCGGTGGGATACATGTGAG 798 Query 809 TT--A--TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATCTTCTTA 864 | | ||||||| ||| ||||||||||||| |||| |||| ||||||| |||||| Sbjct 799 GTGGAGATTTGGGTGACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTA 855 Query 865 AAACTTGATAT 875 ||| ||| ||| Sbjct 856 AAAGTTGGTAT 866 > AT3G20700.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:7233525-7234505 REVERSE LENGTH=981 Length=981 Score = 281 bits (152), Expect = 8e-75 Identities = 691/933 (74%), Gaps = 110/933 (12%) Strand=Plus/Plus Query 233 ACAACAATGTTGATCTATCTATAGAGCT-TAAAGGTAAACTTGTTAGCAGAGACAAAACA 291 ||||||| |||||||||||||| || | || ||||| |||| ||||||||||| ||||| Sbjct 122 ACAACAACATTGATCTATCTATAAAG-TGTAGAGGTAGACTTATTAGCAGAGACGAAACA 180 Query 292 GATGATTTATTCCACAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGCA-C- 349 | | | |||| | ||||||||| |||||||||| ||| |||| |||| || | | Sbjct 181 GCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCA 240 Query 350 GG--GAA--A---A--A-A-T--GCTTGTGGTTTTG-AACCCGTATTGGGG-ACAAA-CA 393 || || | | | | | |||||||| |||| |||||||| ||||| | ||| || Sbjct 241 GGAAAAACTATTGATGACACTAGGCTTGTGG-TTTGTAACCCGTA-TGGGGTA-AAACCA 297 Query 394 AAATGGATC-ATGCC-AAGACCTCCTTTCGGGTGCTCAGACAGGTATGCTCTCGGCTACG 451 ||||||||| || || |||| | || |||| | | ||||| | | ||||||| | | Sbjct 298 AAATGGATCAATCCCAAAGA--TAATTACGGGAGATTAGACATATTTTCTCTCGGATTTG 355 Query 452 ACAAATCCA-GCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTTAACCAAAAGAACCTC 510 |||||| | |||||||| |||||||| ||||| ||| || | || | | || || ||| Sbjct 356 ACAAAT-TATGCGGTAGCTACAAAATCTTGAGGATTTACGAT-TT--CGATAATAAACTC 411 Query 511 GATGTATACGATTTGAGCTCTAGTTCATGGATGGTTCCTGATGATGTCACTCTTGAAAGG 570 | | |||||||||||||||| |||||||||| |||| | || | |||||||| | || Sbjct 412 CAAATCTACGATTTGAGCTCTAATTCATGGATGATTCC--AAGA-GACACTCTTGGACGG 468 Query 571 GATAT--A-TATATGCAACAA-GGCGTGTCTTTGAAGGGAGATACTTACTGGTATGCTAA 626 ||||| | ||||||||| || |||||||||| |||| | ||||||| |||| ||||| Sbjct 469 GATATAGAGTATATGCAA-AATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAG 527 Query 627 AGATGAGGATTCA-ATAGATGGTTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTG 685 |||| | | ||| | | || ||| || || ||||||||||||||||| |||||||| | Sbjct 528 AGATAAACAATCACA-ATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCG 586 Query 686 GACCGTGTTTGCCTCTGCCTCAGCCCTTGAATGAAGGTTATGCCCTATACAAAGGTTATG 745 |||| || ||| || | |||||| ||| || | | || | | | || Sbjct 587 GACC------GCGTCTACCACTGCCCTTCAAT---GG--A-G--CT-T----A---TGTG 624 Query 746 CAACTCTATCTGTAGTTACAGAAGAGAAGCTTGCTGTGTTATTACAGCGGTGGGATACAA 805 ||||||||| |||| ||||||| ||||||| |||||||| |||| | ||||| || Sbjct 625 --TCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATA-AA 681 Query 806 -C-G-G-T---TATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCATGGAGCATC 858 | | | | ||||||||||||||||||||||||||||| | ||||| |||||| || Sbjct 682 TCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTC 741 Query 859 TTCTTAAAACTTGATATGATAA-TGGAACCAAAGATTCATCACTATCAGAATTTCTTCAT 917 ||||| ||| |||| |||| || | | | | ||| | || | ||||||||| || Sbjct 742 TTCTTGAAAGTTGAAATGA-AACT--A-CGT--G-TTC-TGTCT-TG-GAATTTCTTGAT 791 Query 918 TGACGAGGAAAAGAAAGTCGCAGTTGTTTTTGACAAAGACAAAGACAGGTCAACTTGGCC 977 |||| ||||||||||| |||||||||||||||| |||||||| | || || || Sbjct 792 TGACAAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGACAAGG-CA----AA---GG-- 841 Query 978 GCCTTGGATGTTTAAAACCATTTACAACAGAGCTTACATCGCTGGAGAGAATGGTTATTT 1037 | | | || ||||||| |||| ||| ||||||| || |||||| |||||||||| Sbjct 842 G----G--T-TT-AAAACCAATTACGACATAGCTTACGTCATTGGAGAAAATGGTTATTA 893 Query 1038 CAGAAGTGTGGATCTTCTTAAATCTCCAAACACACGACAACTTGGCCGCCTTGTGTGCTC 1097 |||||| |||||||| | | |||||||||||| || || ||| |||| |||||| || Sbjct 894 CAGAAGAGTGGATCTCCGTGAATCTCCAAACAAAC--CA-CTTTGCCGTATTGTGT-CTT 949 Query 1098 -TTATGTTCCAAGTTCTATG-AAAGTCAAGTAA 1128 |||||||||||||| | || ||| || ||||| Sbjct 950 GTTATGTTCCAAGTTGTGTGCAAA-TCGAGTAA 981 > AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508 FORWARD LENGTH=2038 Length=2038 Score = 80.5 bits (43), Expect = 3e-14 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTTTGCCTCTGC 703 |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 740 TGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGC 785 > AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:16049573-16050865 FORWARD LENGTH=1293 Length=1293 Score = 73.1 bits (39), Expect = 5e-12 Identities = 98/124 (79%), Gaps = 13/124 (10%) Strand=Plus/Plus Query 586 CAAGGCGTGTCT-TTGAAGGGAGATACTTACTGGTATGCTAAAGATGAGGATTCAATAGA 644 |||||||| ||| | |||||| | |||||||||| ||||| ||| || | || ||| Sbjct 616 CAAGGCGTCTCTCTCAAAGGGA-ACACTTACTGGTGTGCTAGAGAAGAAAACTC---AGA 671 Query 645 TGGTTAC--T--TAT--TATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGC 697 ||||||| | ||| | ||||||||||||||||||||||||||||| ||| || ||| Sbjct 672 TGGTTACAATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGC-TTCTGC 730 Query 698 CTCT 701 |||| Sbjct 731 CTCT 734 > AT5G41494.1 | Symbols: | pseudogene of F-box family protein | chr5:16602589-16603438 FORWARD LENGTH=850 Length=850 Score = 69.4 bits (37), Expect = 7e-11 Identities = 46/50 (92%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 656 TATGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGCCTCTGCC 704 ||||||||||||||||||||||||||||| ||||| || |||||||||| Sbjct 308 TATGTTTTGATTTTACAAGAGAGAGATTTAGACCGC-TTCTGCCTCTGCC 356 > AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein | chr1:24571603-24573471 REVERSE LENGTH=1662 Length=1662 Score = 65.8 bits (35), Expect = 9e-10 Identities = 44/48 (92%), Gaps = 2/48 (4%) Strand=Plus/Plus Query 658 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGTGTT-TGCCTCTGCC 704 ||||||||||||||||||||||||||||||||| || | |||||||| Sbjct 1171 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGC-TTCTACCTCTGCC 1217 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55321000590 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5