BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479599
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2933 0.0
AT3G20740.1 | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat... 387 3e-106
> AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:7247095-7249145 FORWARD LENGTH=1962
Length=1962
Score = 2933 bits (1588), Expect = 0.0
Identities = 1842/1965 (94%), Gaps = 16/1965 (1%)
Strand=Plus/Plus
Query 1 ATGCTGGTTGTTTCGGAAAGCTACTTATTAAGCCATCCTTTGTACCTCAAGGCTCTCAAG 60
||||||||||||||||||| |||||||||||||| | |||||||||| || ||||| ||
Sbjct 1 ATGCTGGTTGTTTCGGAAAACTACTTATTAAGCCCTTCTTTGTACCTTAAAGCTCTTAAA 60
Query 61 TTATGCAGCTACCAAAACGTCAAGAAACAACTTTTGTTGATTCATGGGAATTCGGTGACA 120
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||
Sbjct 61 TTATGCAGCTACCAAAACGTCAAGAAACAACTATTGTTGATCCATGGGAATTCGATTACA 120
Query 121 AATGGGTTCGGCTCCAATCTCCAGTTGAACGACATGTTGATAGATTTGTACTTAAAACAG 180
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AATGGGTTCTGCTCCAATCTCCAGTTGAAGGACATGTTGATAGATTTGTACTTAAAACAG 180
Query 181 GGAGATGTGAAACATGCACGTAAACTGTTCGATAGAATTCCTAAGAGAGATGTGGTTTCT 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GGAGATGTGAAACATGCACGTAAACTGTTCGATAGAATTTCTAAGAGAGATGTGGTTTCT 240
Query 241 TGGACAGCTATGATCTCGAGGTTTTCTCGATGTGGATATCACAGGGACGCGTTGTTGTTG 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TGGACAGCTATGATCTCGAGGTTTTCTCGATGTGGATATCACCCGGACGCGTTGTTGTTG 300
Query 301 TTCAAACAGATGCACCGGCAAGATGTTAGGGCTAATCAGTTCACTTACGGGAGTGTTTTG 360
|| ||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 301 TTTAAAGAGATGCACCGGGAAGATGTTAAGGCTAATCAGTTCACTTATGGGAGTGTTTTG 360
Query 361 AAGTCGTGTAAAGATTTGGGATGTCTTAAAGAAGGGATGCAGATACAAGGTTGTTTGGAG 420
|||||||||||||||||||| ||||| |||||||||||||||||||| ||| || |||||
Sbjct 361 AAGTCGTGTAAAGATTTGGGGTGTCTGAAAGAAGGGATGCAGATACATGGTAGTGTGGAG 420
Query 421 AAAGGGAAATGTGCAGGGAACTTAATTGTGAGGAGTGCATTGCTTTCTCTTTATGCCAGG 480
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AAAGGGAATTGTGCAGGGAACTTAATTGTGAGAAGTGCATTGCTTTCTCTTTATGCCAGG 480
Query 481 TGTGGAAAGATGGAGGATGCTCGTCTTCAGTTTGATTCAATGATAGAAAGGGATTTGGTT 540
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TGTGGAAAGATGGAGGAAGCTCGTCTTCAGTTTGATTCAATGAAAGAAAGGGATTTGGTT 540
Query 541 TCTTGGAATTCAATGATCGATGGATACACCGCCAATGCTTGTGCAGATACTTCGTTTAGT 600
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGGAATGCTATGATCGATGGATACACCGCCAATGCTTGTGCAGATACTTCGTTTAGT 600
Query 601 CTGTTTCAGTTAATGTTCGCAGAAGGTAAGAAGCCAGACTGCTTCACCTTTGGAAGCCTC 660
||||||||||| ||| || | ||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CTGTTTCAGTTGATGCTCACGGAAGGGAAGAAGCCAGACTGCTTCACCTTTGGAAGCCTC 660
Query 661 TTGAGAGCTTCTGTTGTAGTTAAGTGTCTTGAACCAGTCGGTGAATTACATGGATTAGCG 720
|||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 661 TTGAGAGCTTCTATTGTCGTTAAGTGTCTTGAAATAGTCAGTGAATTACATGGATTAGCG 720
Query 721 ATCAAGCTGGGTTTTGGAAGATCAAGTGCTCTGATTAGGTCTCTGGTTGATGCATATGTG 780
||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||
Sbjct 721 ATCAAGCTGGGTTTTGGGAGATCAAGTGCACTAATTAGGTCTCTGGTTAATGCATATGTG 780
Query 781 AAGTGTGGTAGCATTGCCAATGCTTGGAAATTGCACGAGGACACAACA-AAAAGAGACTT 839
|||||||||||| ||||||||||||||||| ||||||||| ||||| | |||||||||||
Sbjct 781 AAGTGTGGTAGCCTTGCCAATGCTTGGAAACTGCACGAGGGCACAA-AGAAAAGAGACTT 839
Query 840 AATATCTTGCACTGCTCTAATTACAGGTTTTGCACAGCAGAACATCTGCACAAGTGATGC 899
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 840 ACTATCTTGCACTGCTCTAATTACAGGTTTTTCACAGCAGAACAACTGCACAAGTGATGC 899
Query 900 CTTTGATATCTTCAACGAGATGATACTGATGAAAACAAAGATGGACGAGGTTGTAGTATC 959
||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 900 CTTTGATATCTTCAAAGATATGATACGGATGAAAACAAAGATGGACGAAGTTGTAGTATC 959
Query 960 GTCGATGCTTAAAATATGCACCACCATTGCATCGGTAACCATTGGAAGACAGATCCATGG 1019
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 CTCGATGCTTAAAATATGCACCACCATTGCATCTGTAACCATTGGAAGACAGATCCATGG 1019
Query 1020 TTTTGCCTTAAAATCTTCCCAAATCAGATTTGATGTTGCTTTGGGTAACTCGCTGATAGA 1079
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1020 TTTTGCCTTAAAATCTTCCCAAATCAGATTCGATGTTGCTTTGGGGAATTCGCTGATAGA 1079
Query 1080 TATGTATGCAAAGTCCGGGGACATCGAGGATGCAGTCCTCGCTTTCGAAGAGATGAAAGA 1139
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 TATGTATGCAAAGTCTGGGGAAATCGAGGATGCAGTCCTGGCTTTCGAAGAGATGAAAGA 1139
Query 1140 GAAAGATGTGAGATCATGGACCTCTTTGATCGCAGGATATGGAAGACATGGGAATTTTGA 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GAAAGATGTGAGATCATGGACCTCTTTGATTGCAGGATATGGAAGACATGGGAATTTTGA 1199
Query 1200 GAAAGCAATTGATCTTTATAACAGAATGGAGCATGAAGGGATCAAACCGAATGACGTTAC 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 GAAAGCAATTGATCTTTATAACAGAATGGAGCATGAAAGGATCAAACCGAATGACGTTAC 1259
Query 1260 ATTTCTTTCTCTCCTCTCTGCTTGTAGCCATACAGGACAAACCGAACTAGGCTGGAAGAT 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 ATTTCTTTCTCTCCTCTCTGCTTGTAGTCATACAGGACAAACCGAACTAGGCTGGAAGAT 1319
Query 1320 TTTCGACACAATGATCAACAAGCACGGTATCAAAGCTCGAGAAGAGCACTTCTCTTGCAT 1379
|| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1320 TTACGACACAATGATCAACAAGCACGGAATCGAAGCTCGAGAAGAGCACTTATCTTGCAT 1379
Query 1380 CATAGATATGCTTGCGCGCAGTGGCTACTTGGACGAAGCTTATGAACTGATAAGAAGTAA 1439
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1380 CATAGATATGCTTGCGCGCAGTGGCTACTTGGAAGAAGCTTATGCACTGATAAGAAGTAA 1439
Query 1440 AGAGGGTATTATAAGTCTAAGCTCATCAACATGGGGAGCTTTTCTTGATGCATGCAGGCG 1499
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AGAGGGTATTGTAAGTCTTAGCTCATCAACATGGGGAGCTTTTCTTGATGCATGCAGGCG 1499
Query 1500 CCATGGGAACGTGCAGCTCAGTAAAGTAGCAGCCGCACAGCTTCTGAGTGTGGAACCGAA 1559
||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1500 CCATGGGAATGTGCAGCTCAGTAAAGTAGCAGCCACGCAGCTTCTGAGTATGGAACCGAG 1559
Query 1560 GAAACCAGTCAATTATATCAATTTGGCCAGTGTACATGCAGCTAATGGAGCATGGGACAG 1619
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1560 GAAACCAGTCAATTACATCAATTTGGCCAGTGTGTATGCAGCTAATGGAGCATGGGACAA 1619
Query 1620 TGCTTTGAAGACCAGACAGCTTATGAAAGAGAGTGCTTCCTGCAATAAAGCTCCAGGATA 1679
||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1620 TGCTTTGAATACTAGAAAGCTTATGAAAGAGAGTGGTTCCTGCAATAAAGCTCCAGGATA 1679
Query 1680 CAGCCTTGTGTATTAAACAGAAGGGAATAAGACAAAATCTCCACAAAGGGTTTACACTGT 1739
|||||||||||||| ||| ||| ||||||||||||||||||| ||||||| ||||||||
Sbjct 1680 CAGCCTTGTGTATTGAACT-AAGAGAATAAGACAAAATCTCCAGAAAGGGTATACACTGT 1738
Query 1740 AGTACAAGAGTCGAAGTTAACAAGGCTATAAAGAGCATCTCAAGGTCTCAAGGAGTAGAA 1799
||||||| || || ||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 1739 GGTACAAGGGTGGACGTTAACAAGGCTACAAAGAGCATCTCAAGGTCTCAGGGAGTAGCA 1798
Query 1800 GTGTAGAACCATGATCAGAGTTACAATAAAAGAATGGATATCTC-T--C--CACATTCCT 1854
| | ||||||||| |||||||||||||||||||||||| | | | || ||||
Sbjct 1799 ----A---C-ATGATCAGAATTACAATAAAAGAATGGATATCTCATTTCTTCGCACTCCT 1850
Query 1855 AATTCATCAATTCCTACAAGATTCAGACCACTACTTGGTAATCACGTCCCAGCGCCATAT 1914
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1851 AATTCATCAATTCCTACAAGACTCAGACCGCTACTTGGTAATCACGTCCCAGCGCCATAT 1910
Query 1915 AGTCCCGTCCTCACAGCAAGCAAGAATTGTGCTACAATCCCATGG 1959
|||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1911 AGTCCCGTCCTCGCAGCAAGCAAGAATCGTGCTACAATCCCATGG 1955
> AT3G20740.1 | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like
superfamily protein | chr3:7248809-7252452 REVERSE LENGTH=1563
Length=1563
Score = 387 bits (209), Expect = 3e-106
Identities = 290/327 (89%), Gaps = 14/327 (4%)
Strand=Plus/Minus
Query 1626 GAAGACCAGACAGCTTATGAAAGAGAGTGCTTCCTGCAATAAAGCTCCAGGATACAGCCT 1685
||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1563 GAATACTAGAAAGCTTATGAAAGAGAGTGGTTCCTGCAATAAAGCTCCAGGATACAGCCT 1504
Query 1686 TGTGTATTAAACAGAAGGGAATAAGACAAAATCTCCACAAAGGGTTTACACTGTAGTACA 1745
|||||||| ||| ||| ||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 1503 TGTGTATTGAACT-AAGAGAATAAGACAAAATCTCCAGAAAGGGTATACACTGTGGTACA 1445
Query 1746 AGAGTCGAAGTTAACAAGGCTATAAAGAGCATCTCAAGGTCTCAAGGAGTAGAAGTGTAG 1805
|| || || ||||||||||||| ||||||||||||||||||||| ||||||| | |
Sbjct 1444 AGGGTGGACGTTAACAAGGCTACAAAGAGCATCTCAAGGTCTCAGGGAGTAGCA----A- 1390
Query 1806 AACCATGATCAGAGTTACAATAAAAGAATGGATATCTC-T--C--CACATTCCTAATTCA 1860
| ||||||||| |||||||||||||||||||||||| | | | || ||||||||||
Sbjct 1389 --C-ATGATCAGAATTACAATAAAAGAATGGATATCTCATTTCTTCGCACTCCTAATTCA 1333
Query 1861 TCAATTCCTACAAGATTCAGACCACTACTTGGTAATCACGTCCCAGCGCCATATAGTCCC 1920
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1332 TCAATTCCTACAAGACTCAGACCGCTACTTGGTAATCACGTCCCAGCGCCATATAGTCCC 1273
Query 1921 GTCCTCACAGCAAGCAAGAATTGTGCT 1947
|||||| |||||||||||||| |||||
Sbjct 1272 GTCCTCGCAGCAAGCAAGAATCGTGCT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5