BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479605
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20790.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1757 0.0
AT3G20800.1 | Symbols: | Cell differentiation, Rcd1-like prote... 172 6e-42
> AT3G20790.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:7268752-7271287 FORWARD LENGTH=1306
Length=1306
Score = 1757 bits (951), Expect = 0.0
Identities = 1154/1245 (93%), Gaps = 41/1245 (3%)
Strand=Plus/Plus
Query 11 CTTCACCAGGAATTGCCATTCTCGGAGCTGGGATCTTCGTCAAAACGCAATATATTCCGA 70
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 64 CTTCACCTGGAATTGCCATACTCGGAGCTGGGATCTTCGTCAAAACTCAATACATTCCGA 123
Query 71 GATTGGCTGAGATCTCCGATCTCGTCGTCCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 130
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 GATTAGCTGAGATCTCCGATCTCGTCGACCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 183
Query 131 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCAGAAGTGAAGTGCAAATGGG 190
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 184 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCTGAAGTGAAGTGCAAATGGG 243
Query 191 GAGATGATGGTCTCAATGAGATCATTCAAGATAGTTCAATAGTTGGTGTTGCTGTTGTTG 250
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 244 GAGATGAGGGTCTCAATGAGATCATTCAAGACAGTTCAATAGTTGGTGTTGCTGTAGTTG 303
Query 251 TAGCTGCAGAAACCATGGTTGAAATGTCACTGAAGATGCTCAAGGCAGGAAAACACGTCC 310
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 304 TAGCTGCAGAAACCATGGTTGAATTGTCACTGAAGATGCTCAAGGCAGGAAAGCACGTCC 363
Query 311 TTCAAGAGAAGCCAGCTGCTGCCTCAATCAGTGAGCTAGAAACTGCAATGTCAAGCTATA 370
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 364 TTCAAGAGAAGCCAGCTGCTGCTTCAATCAGTGAGATAGAAACTGCAATGTCAAGCTATA 423
Query 371 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATCTGGGCAGTGGCTGAAAATTATCGTT 430
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 424 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATTTGGGCTGTGGCTGAAAATTATCGTT 483
Query 431 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAACTGGTGATATGATGAACG 490
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 484 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAATTGGAGATATGATGAACG 543
Query 491 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCGAATCCTTATTTCTCAAGCTCGTGGA 550
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 544 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCTAATCCTTATTTCTCAAGCTCCTGGA 603
Query 551 GGCGAAATTTGAGCGGTGGTTTCATCTTGGATATGGGTGTGCATTACATTGCAGGGTTAA 610
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 604 GGCGAAATTTGAGTGGTGGTTTCATCTTGGATATGGGTGTACATTACATTGCAGGATTAA 663
Query 611 GAATGCTTGTTGGATGTGAGGTAGCATCAGTCTCTGCCACCACTTCCCATGTGGATAAGA 670
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 664 GAATGCTTGTTGGATGTGAGGTAACATCAGTCTCAGCCACCACTACCCATGTGGATAAGA 723
Query 671 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTGGAGAACGGATGCTCTGGTG 730
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 724 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTCGAGAACGGATGCTCTGGGG 783
Query 731 TTTTTGTTATGGTTGTGTCTTCAAGATCTCCAAAGGCATGTAGTAAGACTTGGATATTAT 790
||||||||||||||||||||||||| ||||||||| || | || | |||
Sbjct 784 TTTTTGTTATGGTTGTGTCTTCAAGGTCTCCAAAG--AT--ACTA----T-GGA------ 828
Query 791 GGAGAGTCGTAGGATTAAAAGGCACTGTTCAACTTGAGCGTGGAGTCGAAGGTGGCCGAC 850
| | | |||||||| |||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 829 G-A-A-TCGTAGGACTAAAGGGCACTGTTCAACTAGAGCGTGGAGTGGAAGGTGGCCGAC 885
Query 851 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCGT 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 886 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCAT 945
Query 911 TCAGCGGAGTGACTGAAGAGCTAAAAGCGTTCTTCAATGATATCTCAGAGACTTCAAAGG 970
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 946 TCAGCGGAGTGACTGAAGAGTTAAAAGCGTTCTTCAATGATATTTCAGAAACTTCAAAGG 1005
Query 971 AGCAAGAGCCTCGTCTATCATACGTGGAAGGTGCTCGTGACGTTGCGGTTCTTGAAGCAA 1030
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1006 AGCAAGAGCCTCGTCTATCATATGTGGAAGGTGCTCGTGACGTTGCAGTTCTTGAAGCAA 1065
Query 1031 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCACCAAATTCTAGCTTTGAA 1090
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1066 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCAACAAATTCTAGCTTTGAA 1125
Query 1091 CCTTTC-------C-A--AGA-T--A-C---C-GCTAAAGCTTT-GATGGAATAAAAATT 1131
||||| | | ||| | | | | ||||||||||| | |||||||||||||
Sbjct 1126 CCTTTATTAAGTACGATTAGACTCCAACATACCGCTAAAGCTTTTGCTGGAATAAAAATT 1185
Query 1132 GTTAC-GTTTCAA-ACTGAAAATACATACTCTATAATATTTCTTTTGTAACCAATCTTTT 1189
||||| ||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1186 GTTACCGTT-CAACA-TGATAATACAAACTCTATAATATTTCTTTTGTAACCAATCTTTT 1243
Query 1190 ATTATCCCGAGACTTATGCATTCTTGGGGCTTTGTTCTAAAGCTT 1234
|||||||| ||||||||||||||| |||| || |||||| |||||
Sbjct 1244 ATTATCCCAAGACTTATGCATTCTGGGGGATTGGTTCTAGAGCTT 1288
> AT3G20800.1 | Symbols: | Cell differentiation, Rcd1-like protein
| chr3:7271137-7273947 REVERSE LENGTH=1276
Length=1276
Score = 172 bits (93), Expect = 6e-42
Identities = 122/135 (90%), Gaps = 5/135 (4%)
Strand=Plus/Minus
Query 1103 ACCGCTAAAGC-TTTGATGGAATAAAAATTGTTA-CGTTTCAAAC-TGAAAATACATACT 1159
||||||||||| |||| ||||||||||||||||| || ||| ||| ||| |||||| |||
Sbjct 1276 ACCGCTAAAGCTTTTGCTGGAATAAAAATTGTTACCG-TTC-AACATGATAATACAAACT 1219
Query 1160 CTATAATATTTCTTTTGTAACCAATCTTTTATTATCCCGAGACTTATGCATTCTTGGGGC 1219
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1218 CTATAATATTTCTTTTGTAACCAATCTTTTATTATCCCAAGACTTATGCATTCTGGGGGA 1159
Query 1220 TTTGTTCTAAAGCTT 1234
|| |||||| |||||
Sbjct 1158 TTGGTTCTAGAGCTT 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5