BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479606
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20800.1 | Symbols: | Cell differentiation, Rcd1-like prote... 1962 0.0
AT5G12980.1 | Symbols: | Cell differentiation, Rcd1-like prote... 368 7e-101
AT3G20790.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 185 7e-46
> AT3G20800.1 | Symbols: | Cell differentiation, Rcd1-like protein
| chr3:7271137-7273947 REVERSE LENGTH=1276
Length=1276
Score = 1962 bits (1062), Expect = 0.0
Identities = 1176/1230 (96%), Gaps = 11/1230 (1%)
Strand=Plus/Plus
Query 1 AACTCTGGAGAATGGCGAATCTACCTTCATCTCTCTCCATGGGCACACCTTTCGGTGGTC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 40 AACTCTGGAGAATGGCGAATCTACCTTCTTCTCTCTCCATGGGCACACCTTTCGGTGGTC 99
Query 61 CTAGCACCTCCGCACAAAATCCTACCGGAGCTCCGGCCAACAAAGATCGCAATTTGGCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CTAGCACCTCCGCACAAAATCCTACCGGAGCTCCGGCCAACAAAGATCGCAATTTGGCCT 159
Query 121 CTGCTGAGCAGTTGGTACTCGATCTCAGCAATCCCGAACTCAGAGAGAATGCTCTTCTCG 180
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 160 CTGCTGAACAGTTGGTACTCGATCTCAGCAATCCTGAACTCAGAGAAAATGCTCTTCTCG 219
Query 181 AGCTTTCCAAGAAAAGAGAATTGTTTCAGGATCTGGCGCCTCTGTTGTGGAACTCTTTTG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 220 AGCTTTCCAAGAAAAGAGAATTGTTTCAGGATCTGGCGCCTTTGTTGTGGAACTCTTTTG 279
Query 241 GTACAATTGCTGCTTTGTTGCAGGAGATAGTATCAATCTACTCTGTTCTTGCACCTCCAA 300
|||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 280 GTACCATTGCTGCCTTGTTACAGGAGATTGTATCAATCTACTCTGTTCTTGCACCTCCAA 339
Query 301 ATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCCCTTCTTCAGTGCGTAG 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 340 ATCTGACTCCTGCTCAGTCCAACCGTGTTTGCAACTCGCTCGCTCTTCTTCAGTGCGTAG 399
Query 361 CATCTCATTCTGACACGAGAATGTTATTTCTCAAGGCTCATATCCCATTGTACCTTTATC 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 400 CATCTCATTCTGACACGAGAATGTTATTTCTCAAGGCTCATATCCCGTTGTACCTTTATC 459
Query 421 CCTTCCTTAATACAACGAGTAAGTCAAGACCTTTCGAATACTTGCGGCTTACTAGCTTAG 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 460 CCTTCCTTAATACAACGAGTAAGTCCAGACCTTTCGAATACTTGCGGCTTACTAGCCTAG 519
Query 481 GTGTCATTGGTGCACTTGTGAAGGTTGATGATACAGAGGTCATTAGCTTCCTACTTTCAA 540
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 520 GTGTCATCGGTGCACTTGTGAAGGTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAA 579
Query 541 CTGAAATTATTCCGCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAG 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CTGAAATTATTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAG 639
Query 601 TGGCAACATTTATTGTTCAAAAGATTTTGTTGGATGATGTGGGGATGGATTACATCTGCA 660
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 640 TGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCA 699
Query 661 CAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGGGCAACATGGTTCAGTCACTTG 720
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 700 CAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGGGAAATATGGTTCAGTCACTTG 759
Query 721 TGGAGCAGCCTTCTCCGCGGCTTTTGAAGCATATCATTCGTTGCTATCTCCGTCTATCAG 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 TGGAGCAGCCTTCTCCGCGCCTTTTGAAGCATATCATTCGTTGCTATCTCCGTTTATCAG 819
Query 781 ACAACCCAAGGGCTTGTGCTGCACTCGCAAGCTGTCTCCCTGACTCGCTACGAGATGGAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 ACAACCCAAGGGCTTGTGCTGCACTCGCAAGCTGTCTCCCTGACTCGCTACGAGATGGAT 879
Query 841 CCTTTAGCAATTGTCTTCGCGAGGATCCAACTGCAAGGAGGTGGCTGCAACAGTTGGTTC 900
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 880 CCTTTAGCAATTGTCTTCGCGAGGATCCAACTGCAAGAAGGTGGCTGCAACAGTTGGTGC 939
Query 901 ATAATGTTGGAGTTGGTCGAGTCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTT 960
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ACAATGTTGGAGTTGGTCGCGTCCCAACACATCAAGGTGGAGGATTTGAGCACATGCTTT 999
Query 961 GAGCTGAATCTATCTCAG-CCCATCCATGGAGTAT-TT-CTTCTGGTTTTGTTTCTAATT 1017
|||||||||| |||||| |||||||||||||| | || |||||| ||||||||||||||
Sbjct 1000 GAGCTGAATCCATCTCAAACCCATCCATGGAGTGTGTTTCTTCTGTTTTTGTTTCTAATT 1059
Query 1018 TATTTATGTGCTTTTGA-TGCCTTAACTTAAAGATGATGGGTTATAGGCTTTTTAGTCTG 1076
|| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1060 -ATACATGTGCTTTTTAATGCCTTAACTTA--GATGATGGGTTATAGGCTTTTTAGTCTG 1116
Query 1077 TTTGAAATTCTTATTGTAATTATTTATAAGCTTTAGAACAAAGCCCCAAGAATGCATAAG 1136
||||||||||||||||||||||||| |||||| |||||| || |||| ||||||||||||
Sbjct 1117 TTTGAAATTCTTATTGTAATTATTTTTAAGCTCTAGAACCAATCCCCCAGAATGCATAAG 1176
Query 1137 TCTCGGGATAATAAAAGATTGGTTACAAAAGAAATATTATAGAGTATGTATTTTCA-GTT 1195
||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1177 TCTTGGGATAATAAAAGATTGGTTACAAAAGAAATATTATAGAGTTTGTATTATCATGTT 1236
Query 1196 TGAAACG-TAACAATTTTTATTCCATCAAA 1224
||| || ||||||||||||||||| ||||
Sbjct 1237 -GAA-CGGTAACAATTTTTATTCCAGCAAA 1264
> AT5G12980.1 | Symbols: | Cell differentiation, Rcd1-like protein
| chr5:4105383-4108184 REVERSE LENGTH=1160
Length=1160
Score = 368 bits (199), Expect = 7e-101
Identities = 559/729 (77%), Gaps = 40/729 (5%)
Strand=Plus/Plus
Query 97 CCAACAAAGATCGCAATTTGGCCTCTGCTGAGCAGTTGGTACTCGATCTCAGCAATCCCG 156
||||||| ||||| || | | || || |||||||| | |||||||||||||||||||
Sbjct 119 CCAACAACGATCGGAAGCTATCATCGGCGGAGCAGTTAATTCTCGATCTCAGCAATCCCG 178
Query 157 AACTCAGAGAGAATGCTCTTCTCGAGCTT-TCCAAGAAAAGAGA-ATTGTTTCAGGATCT 214
|||||||||| ||||| |||| |||| || || ||||| ||||| || ||||| ||| |
Sbjct 179 AACTCAGAGAAAATGCACTTCACGAG-TTGTCTAAGAAGAGAGAGATC-TTTCAAGATTT 236
Query 215 GGCGCCTCTGTTGTGGAACTCTTTTGGTACAATTGCTGCT-TTGTTGCAGGAGATAGTAT 273
||| || || || ||| | ||| ||||||| ||| ||||| || | |||||||| |||
Sbjct 237 GGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTTCTA-CAGGAGAT--TAT 293
Query 274 CA-A-TCTACTCTGTTCT-TGCACCTCCAAATC-TGACTCCTGCTCAGTCCAACCGTGTT 329
| | | ||| ||| || | | ||||||| | ||||||||||||| || ||| | ||
Sbjct 294 CGCAGTTTACCCTGCCCTAT-CTCCTCCAAC-CATGACTCCTGCTCAATCTAACAGGGTG 351
Query 330 TGCAACT-CGCTCGCCCTTCTTCAGTGCGTAGCATCTCATTCTGACACGAGAATGTTATT 388
||||| | | || || ||||||||||| || || |||||| |||| ||||||||||| ||
Sbjct 352 TGCAA-TGCACTTGCTCTTCTTCAGTGTGTTGCTTCTCATACTGATACGAGAATGTTGTT 410
Query 389 TCTCAAGGCTCATATCCCATTGTACCTTTATCCCTTCCTT-AATACAACGAGTAAGTCAA 447
|| || || ||| | ||||||||||| ||| | ||| || |||||| | || || ||||
Sbjct 411 CCTAAAAGCCCATCTGCCATTGTACCTGTATGCTTTC-TTGAATACATCAAGCAAATCAA 469
Query 448 GACC-TTTCGAATACTTGCGGCTTACTAGCTTAGGTGTCATTGGTGCACTTGTGAAGGTT 506
|||| ||| || ||| ||||||| |||||||| || || |||||||||||||| ||||||
Sbjct 470 GACCGTTT-GAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTTGTTAAGGTT 528
Query 507 GATGATACAGAGGTCATTAGCTTCCTACTTTCAA-CTGAAATTATTCCGCTGTGCCTCCG 565
|||||||| || || || || ||||| ||| ||| |||| ||| | || ||||||||||
Sbjct 529 GATGATACTGAAGTGATCAGATTCCTTCTT-CAAACTGAGATTGTCCCATTGTGCCTCCG 587
Query 566 TACCATGGA-AATGGGGAGTGAGCTGTCAAAAACAGTGGCAACATTT-ATTGTTCA-AAA 622
|| ||||| ||||| || ||| | ||||| || || || || ||| |||||||| |||
Sbjct 588 GACAATGGAGAATGGC-AGCGAGTTATCAAAGACTGTTGCTAC-TTTCATTGTTCAGAAA 645
Query 623 GATTTTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGC 682
| ||||| |||| ||||| ||| | || ||||| ||||| ||||| ||| | || |||||
Sbjct 646 G-TTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGC 704
Query 683 AGTTGGTCGAGTGTTGGGCAACATGGTTCAGT-CACTTGTGGA-GCAGCCTTCTCCGC-- 738
| ||||| || ||||| || |||||| | | |||||| || | | || || | ||
Sbjct 705 TCTGGGTCGGGTTTTGGGAAATATGGTT-ACTTCACTTGCAGAAGGA-CCGTC-C-GCTA 760
Query 739 GGCTTTTGAAGCATATCATTCGTTGCTATCTCCGTCT--ATCAGACAACCCAAGGGCTTG 796
|||| | ||||| ||||| || |||||||| || || | |||| ||||| || || ||
Sbjct 761 GGCTACTAAAGCACATCATACGCTGCTATCTTCG-CTTGA-CAGATAACCCCAGAGCATG 818
Query 797 TGCTGCACT 805
| ||||||
Sbjct 819 CGATGCACT 827
> AT3G20790.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:7268752-7271287 FORWARD LENGTH=1306
Length=1306
Score = 185 bits (100), Expect = 7e-46
Identities = 128/141 (91%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 1086 CTTATTGTAATTATTTATAAGCTTTAGAACAAAGCCCCAAGAATGCATAAGTCTCGGGAT 1145
|||||||||||||||| |||||| |||||| || |||| ||||||||||||||| |||||
Sbjct 1306 CTTATTGTAATTATTTTTAAGCTCTAGAACCAATCCCCCAGAATGCATAAGTCTTGGGAT 1247
Query 1146 AATAAAAGATTGGTTACAAAAGAAATATTATAGAGTATGTATTTTCA-GTTTGAAACG-T 1203
|||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||| || |
Sbjct 1246 AATAAAAGATTGGTTACAAAAGAAATATTATAGAGTTTGTATTATCATGTT-GAA-CGGT 1189
Query 1204 AACAATTTTTATTCCATCAAA 1224
|||||||||||||||| ||||
Sbjct 1188 AACAATTTTTATTCCAGCAAA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5