BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479611
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20830.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 2008 0.0
AT1G51170.1 | Symbols: | Protein kinase superfamily protein | ... 422 5e-117
> AT3G20830.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr3:7284963-7286260
REVERSE LENGTH=1298
Length=1298
Score = 2008 bits (1087), Expect = 0.0
Identities = 1219/1283 (95%), Gaps = 8/1283 (1%)
Strand=Plus/Plus
Query 1 CTCACACTCAATGGAGACATTACCATCGTCCCCACCATCATCACCGCCGGAGATTCTCGA 60
|||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCACACTCAATGGAGCCATCACCGTCGTCCCCACCATCATCACCGCCGGAGATTCTCGA 60
Query 61 CCTTGACTCTATCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTGACTCTATCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCT 120
Query 121 CGCACACGACGTCGTTTCAACCTCTTCTTCTTCTTCTCCCTTCGCCGTCAAGCTCGTCCA 180
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CGCGCACGACGTCGTTTCAACCTCTTCTTCTTCTTCTCCCTTCGCGGTCAAGCTCGTCCC 180
Query 181 CAAATCCTCCGCTTCCTCTCTCCGCCGTGCACGCTGGGAAATCGAGGTCCTCCGTCGTCT 240
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 CAAATCCTCTGCTTCCTCTCTCCGCCGTGCACGGTGGGAAATCGAGGTCCTCCGTCGTCT 240
Query 241 CTCCGTTGACTCTAATCAAAACCCTTTTCTCCCTCGTCTCTTAGCTTCTTTCGAGTCACC 300
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 241 CTCCGTTGACTCTAATCAAAACCCTTTTCTTCCACGTCTCTTAGCTTCTTTTGAGTCACC 300
Query 301 CGAATACTTCGCTTGGGCCGTCCCTTATTGTTCCGGTGGTGATCTTAATGTCCTTCTTCA 360
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 GGAATACTTTGCTTGGGCCGTCCCTTATTGTTCCGGCGGTGATCTTAATGTACTTCTTCA 360
Query 361 CCGTCAAAATGACGGCGTTTTTAGCTCCTCTGTTATAAGATTCTACGTGGCTGAGATCGT 420
|||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 361 TCGTCAAAACGACGGCGTTTTCAGTTCCTCTGTTATTAGATTCTACGTGGCGGAGATCGT 420
Query 421 CTGTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCCGAAAA 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 421 CTGTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTAAAACCAGAGAA 480
Query 481 CATTCTGATTCAGCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATTCTGATTCAGCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCT 540
Query 541 TAAAAAACCCAC-CCGACCCCAATTCTATCAACCCGACCCGGAATTGAGCACCGATCGTa 599
|||||||||| | ||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 541 TAAAAAACCC-CTCCGACCCCATTTCTATCAACCCGACCCGGAATTGATAATCGATCGTA 599
Query 600 aaaaaaGTCGGAGCTTTTCTCGGTTGATCTCGCCGGCGGTGGAGAAAAACAAAACAGGGT 659
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 600 AAAAAAGTCGGAGCTTTTCTCGGTTGATCTCGCCGACGGCGGAGAAAAACAAAACAGGGT 659
Query 660 TGAAGAAAACAAGATCCGCAAGGGTTAACCCGATTAATCGCCGGAAAACGAGCTTCTCCT 719
||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 660 TGAAGAAAACAAGATCCGCTCGGGTTAACCCAATTAATCGCCGGAAAACGAGTTTCTCCT 719
Query 720 CCGGCGAACGTTCTAACTCCTTCGTCGGAACGGACGAGTACGTCTCGCCGGAGGTAATTC 779
|||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 720 CCGGTGAACGTTCTAACTCATTTGTTGGAACGGACGAGTACGTCTCGCCGGAGGTAATTC 779
Query 780 GCGGCGACGGTCACGACTTCGCTGTAGATTGGTGGGCTCTCGGCGTTTTGACATACGAGA 839
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 780 GCGGCGACGGTCACGACTTCGCCGTCGATTGGTGGGCTCTTGGCGTTTTGACATACGAGA 839
Query 840 TGATGTACGGAGAAACGCCGTTCAAAGGG-AAGAGCAAGAAGGAGACTTTTCGTAACGTG 898
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 840 TGATGTATGGAGAGACGCCGTTCAA-GGGTAAGAGCAAGAAGGAGACTTTTCGTAACGTG 898
Query 899 TTGATGAAGGAACCCGAGTTCGCTGGAAAACCCAACGACCTCACTGATTTGATCCGGCGG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGATGAAGGAACCCGAGTTCGCCGGAAAACCCAACGACCTCACTGATTTGATCCGGCGG 958
Query 959 TTACTGGTGAAGGATCCGAATAGACGGTTAGGTTGCCACCGTGGCGCGGCGGAGATAAAG 1018
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 959 TTACTGGTGAAGGATCCGAATAGAAGGTTAGGTTGCCACCGTGGCGCGGCGGAGATAAAA 1018
Query 1019 GAGCACGCTTTTTTCAGTGG-TGTGAGATGGGATTTGTTAACGGAGGTGGTACGACCGCC 1077
|||| |||||||||| | || |||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1019 GAGCTCGCTTTTTTC-GCGGGTGTGAGGTGGGATTTGTTAACGGAGGTGTTACGACCTCC 1077
Query 1078 GTTTATTCCGTTAAGAGATGACGGAGAATTAACGGTAGGTGGGTTTGATTTAAGGGAACA 1137
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1078 GTTTATTCCGTTAAGAGATGACGGAGAGTTAACGGTAGGTGGGTTTGATATAAGGGAACA 1137
Query 1138 TTTTGAGAAACTGAGGACGACTCCATCATCAGCTCCTCCGTCACCGTTACAGT-CTCCGC 1196
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 1138 TTTTGAGAAACTGAGGACGACGCCATCATCAGCTCCTCCGTCACCGTTAC-GTTCTCCGC 1196
Query 1197 CGCACGTGTGTCGTAAAAACGATCCGTTTATTGATTTCTAATCCACGTGTGGGGAATCTA 1256
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1197 CGCACGTGTGTCGTAAAAACGATCCGTTTATTGAATTCTAATCCACGTGTGGGGAATCTA 1256
Query 1257 ACACGTACAAAGTTGTAGATAAA 1279
||||||||||||||||||| |||
Sbjct 1257 ACACGTACAAAGTTGTAGAGAAA 1279
> AT1G51170.1 | Symbols: | Protein kinase superfamily protein
| chr1:18953458-18954892 REVERSE LENGTH=1435
Length=1435
Score = 422 bits (228), Expect = 5e-117
Identities = 430/525 (82%), Gaps = 23/525 (4%)
Strand=Plus/Plus
Query 72 TCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCTCG-CACACGAC 130
|||||| ||||||| ||||||| ||||||||||| || || |||||||||| | ||||||
Sbjct 118 TCAAAGTTCTCAAACTCCTCGGAAAAGGCGCCACCGGAACAGTCTTCCTCGTC-CACGAC 176
Query 131 GTC-GTTT-CAACCTCTTCT-TCTTCTTCTCCCTTCGCCGTCAAGCTCGTCCACAAATCC 187
|| |||| | | ||| ||| | |||||||||||| || | || |||||| ||||||||
Sbjct 177 -TCTGTTTCCGA-CTCCTCTGT-TTCTTCTCCCTTTGCTTTAAAACTCGTCGACAAATCC 233
Query 188 TCCGCTTCCTCTCTCCGCCGTGCACGCTGGGAAA-TCGAGGTCCTCCGTCGTCTCTCCGT 246
||||| || ||||||||||||||| | ||||||| || || ||||||| ||||||||||
Sbjct 234 TCCGCATCTTCTCTCCGCCGTGCAAGGTGGGAAATTC-AGATCCTCCGACGTCTCTCCGA 292
Query 247 TGACTCTAATCAAAACCCTTTTCTCCCTCGTCTCTTAGCTTCTTTC-GAGTCAC-CCGAA 304
|||| | || | |||||| |||||||| ||||||||||| || || || | | |||
Sbjct 293 TGACACAAACCCAAACCCATTTCTCCCAAAACTCTTAGCTTC-ATCAGAATC-CTCTGAA 350
Query 305 TACTTCGCTTGGGCCGTCCCTTATTGTTCCGGTGGTGATCTT-AATGTCCTTCTTCACCG 363
| | |||| ||||| | ||||| || |||||||| ||| || || ||||| | || ||
Sbjct 351 TTCATCGCATGGGCTTTACCTTACTGCTCCGGTGGAGAT-TTAAACGTCCTCCGACAACG 409
Query 364 TCAAAATGACGGCGTTTTTAGCTCCTCTGTTA-TAAGATTCTACGTGGCTGAGATCGTCT 422
|||||| |||||||||||||||||||| |||| ||| ||||||| | ||||| |||||||
Sbjct 410 TCAAAACGACGGCGTTTTTAGCTCCTCCGTTATTAA-ATTCTACTTAGCTGAAATCGTCT 468
Query 423 GTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCCGAAAACA 482
|||||||||| || |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 469 GTGCGCTTGACCACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATA 528
Query 483 TTCTGATTCA-GCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCTT 541
| || |||| | |||| |||||||| || |||||||||||||| || ||| | || ||
Sbjct 529 TACTTCTTCAAG-AATCGGGTCACGTGACTTTAACCGATTTTGATCTCTCTTGTAGTCTC 587
Query 542 AAAAAACCCACCCGACCCCAATTCTATCAAC---CCGACCCGGAA 583
|| ||||||||||||||| |||||||||| | |||||||||||
Sbjct 588 AATAAACCCACCCGACCCGAATTCTATCATCTATCCGACCCGGAA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5