BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479613
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20850.1 | Symbols: | proline-rich family protein | chr3:73... 346 7e-95
> AT3G20850.1 | Symbols: | proline-rich family protein | chr3:7304157-7304561
FORWARD LENGTH=405
Length=405
Score = 346 bits (187), Expect = 7e-95
Identities = 224/241 (93%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 71 ctcctattccttctccggtata-t-t-ctcctccggctgatcttcctcctcctcctactc 127
||||| |||| ||||||| || | | ||||||| ||||||||||||||||||||||||
Sbjct 164 CTCCTCCTCCTACTCCGGTCTATTCTCCTCCTCCAGCTGATCTTCCTCCTCCTCCTACT- 222
Query 128 ccgt-ctattctcctccggctgatctttctcctcctactccAATCTATCCTCCTCCGGTT 186
|||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 223 CCGTACTATTCTCCACCGGCTGATCTTCCTCCTCCTACTCCGATCTATCCTCCTCCGGTT 282
Query 187 GTTTTTCCGCCTCCTCAAGCTTATCAAGCCTACTATTACAGGAAATCTCCACCACCACCA 246
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCTTTTCCTCCTCCTCAAGCTTATCAAGCCTACTATTACAGGAAATCTCCACCACCACCA 342
Query 247 CCTTCTAGATATGGAAAAGTGTATCCACCTCCTCCCGCCAAACCATGGTGGTGGTTGTTG 306
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 343 CCTTCTAAATATGGAAAAGTGTATCCACCTCCTCCAGCCAAACCATGGTGGTGGTTGTTG 402
Query 307 T 307
|
Sbjct 403 T 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14225772967
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5