BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479615
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20870.1 | Symbols: ZTP29 | ZIP metal ion transporter family... 1604 0.0
> AT3G20870.1 | Symbols: ZTP29 | ZIP metal ion transporter family
| chr3:7309279-7312752 REVERSE LENGTH=1327
Length=1327
Score = 1604 bits (868), Expect = 0.0
Identities = 950/989 (96%), Gaps = 8/989 (1%)
Strand=Plus/Plus
Query 162 ATTTCGTTTGTGATTTTATCAAGCCTAGCTTCAATTC----CTG-TTAATCGATGGATTC 216
||||||||||||||||| | ||| ||||||||||||| | | |||||| ||||||||
Sbjct 225 ATTTCGTTTGTGATTTTGTTAAGGCTAGCTTCAATTCTATTCAGATTAATCAATGGATTC 284
Query 217 TCAGATGCTCGTGGCGCTTGGACTATCCCTTGTTGGGGGATTAAGTACTTCTTTAGGTGC 276
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 285 TCAGATGCTCGTGGCGCTTGGACTATCCCTTGTTGGGGGATTAAGTACCTCTTTAGGTGC 344
Query 277 GCTTTTCGTAGTTCTTAGTGAGACTCCCAATATGAAGATGCTTGGACTTCTTCAGGGTTT 336
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 345 GCTTTTTGTAGTTCTTAGTGAGACTCCCAATATGAAGATGCTTGGACTTCTACAGGGTTT 404
Query 337 TGCGGCAGGTCTGATGTTGAGTATATCGTTCCTGGATTTGGCTCATAATGCTATTAACTC 396
||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 405 TGCTTCAGGTCTGATGTTGAGCATATCGTTCTTGGATTTGGCTCATAATGCTATAAACTC 464
Query 397 TATTGGGTTCTTAAAAGCCAATCTCTGGTTTTTCGGTGGTGTGATATTCTTTGCGTGTAT 456
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 465 TATTGGGTTCTTTAAAGCCAACCTCTGGTTTTTCGGTGGTGTGATATTCTTTGCGTGTAT 524
Query 457 TGCCAAATTCATACCCGAACCAACAGTTGGTCCTTCTACTGACGTG-AAAAGAAGAAAGA 515
| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 525 TACCAAATTCATACCCGAACCAACACTTGGTCCTTCTACTGACG-GCAAAAGAAGAAAGA 583
Query 516 AAAGTGGAGACGAGGGAGGTAAAGACACGATGAAGAAGCATCGCAAGCAAGTCTTATATA 575
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 584 AAAATGGAGACGAGGGAGGTAAAGACATGATGAAGAAGCATCGCAAGCAAGTCTTATATA 643
Query 576 GTGGACTTATTACAGCTATAGGCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTAT 635
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GTGGACTTATAACAGCTATAGGCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTAT 703
Query 636 TTCTCGGATCAATTAAGGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATTGCTTTAC 695
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 704 TTCTCGGATCAATAAAGGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTAC 763
Query 696 ACAACATTCCTGAGGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAGCAAAT 755
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACAACATTCCCGAGGGTGTTGCAGTTGCACTTCCTATTTATTTTGCAACAGAGAGCAAAT 823
Query 756 GGCAGGCATTTAAGTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GGCAGGCATTTAAGTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCG 883
Query 816 TGGCCTATCTTTTCCCAAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG 875
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TGGCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG 943
Query 876 TGGGTGGAATCATGGCTTTCCTAACGTTGCACGAAATGCTTCCTTTGGCATTTGATTATG 935
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 944 TTGGTGGAATCATGGCTTTCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATG 1003
Query 936 CGGGACAGAAACAAGCTGTGAAGGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGTC 995
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1004 CGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGTC 1063
Query 996 TTTACTTTCTGGAGCTGAGTTTACCTGATACAATGAGCTTGTAAGGTTAATGATGTCATG 1055
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1064 TTTACTTTCTGGAGCTGAGTTTGCCTGAGACAATGAGCTTGTAAGTTTAATGATGTCATG 1123
Query 1056 TGCAATAATTGCCTCCCC-AAAGAGATAAATCAGTCTCTGGAGTGAAGTAGTCTCTTTGT 1114
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TGCAATAATTGCCTCCCCCAAAGAGATAAATCAGTCTCTGGAGTGAAGTAGTCTCTTTGT 1183
Query 1115 ATCTGTAAAGACTGAAATCTGTAAACAAT 1143
|||||||||||||||||||||||||||||
Sbjct 1184 ATCTGTAAAGACTGAAATCTGTAAACAAT 1212
Score = 152 bits (82), Expect = 7e-36
Identities = 113/126 (90%), Gaps = 9/126 (7%)
Strand=Plus/Plus
Query 1 TAGTAGGTAGAAGAAAACGAGAGGCAAGGGTCAGGCATAATATACTCTCTCACTAGGCTA 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1 TAGTAGGTAGAAGAAAACGAGAGGCAAGGGTCAGGCATAATATGCTCTCTCACTAGCCTA 60
Query 61 AGAATTTG-A-A-GC-----C-ATGGATTAGGGTTTTTCAGTTTCCTCCTTCCATCGATT 111
|||||||| | | || | |||||||||||||||||||||||||| ||| |||||||
Sbjct 61 AGAATTTGTAGAAGCGAAAACCATGGATTAGGGTTTTTCAGTTTCCTCTTTCAATCGATT 120
Query 112 AACCCA 117
||||||
Sbjct 121 AACCCA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5