BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479619
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20920.1 | Symbols: | translocation protein-related | chr3:... 2159 0.0
> AT3G20920.1 | Symbols: | translocation protein-related | chr3:7328576-7330751
REVERSE LENGTH=1338
Length=1338
Score = 2159 bits (1169), Expect = 0.0
Identities = 1265/1311 (96%), Gaps = 7/1311 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaCTCTCCGACTCGGAAGAAGAGGGAGAGAGATGAAGAAGCCGGTCGGAGCCGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AAAAAAACTCTCCGACTCGGAAGAAGAGGGAGAGAGATGAAGAAGCCGGTCGGAGCCGAG 77
Query 61 AAGAAGAGGGTTAAACGATCATCGGGATCTGCATCTACCTCCGTTAGAGATTCTGGTTCT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 78 AAGAAGAGGGTTAAACGATCATCGGGATCTGCATCTACTTCCGTTAGAGATTCTGGTTCT 137
Query 121 GATGCTCAACCTAGGAAGCAAGCTGTGAAGAAGGATAGTTTTCAGTTGTTTGCTGAGAAA 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GATTCTCAACCTAGGAAGCAAGCTGTGAAGAAGGATAGTTTTCAGTTGTTTGCTGAGAAA 197
Query 181 GTTAGAGACCACAAGGGATTGGAATCCAGATGGGCTGTTATGGAGCAAGCACGAGTCGAA 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 198 GTTAGAGACCACAAGGGATTAGAATCCAGATGGGCTGTTATGGAGCAAGCACGAGTTGAA 257
Query 241 TA-TTTCAGAGGGAAAGATTTTGTGAGCTTCATGAAGAATAATCCAGAGTTTAAAGAGAT 299
|| ||| ||||||||||||||||||||||| ||||||||||| || || |||||||| ||
Sbjct 258 TACTTT-AGAGGGAAAGATTTTGTGAGCTTTATGAAGAATAACCCTGACTTTAAAGATAT 316
Query 300 TCTGGAAGAAGATAAAGACCTTGATACAGATGATATTGCCAATGTTTTGTTGGGAAAGAA 359
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 317 TCTGGAAGAAGATAAAGACCTTGACACAGACGATATTGCCAATGTTTTGTTGGGAAAGAA 376
Query 360 CCTTTTGGTTCGCTGTGATCGTGTTACAAAAACTCTTCGTCCCGGGAAGAAAAAGCTCTC 419
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 377 CCTTTTGGTCCGCTGTGATCGTGTTACTAAAACTCTTCGTCCCGGGAAGAAAAAGCTCTC 436
Query 420 TACTTGGCCAGCTCATTTGGAGATTTTCCGTGATGATCAATCTTTCTCTGAAAATGATGC 479
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 437 TACTTGGCCTGCTCATTTGGAGATTTTCCGTGACGATCAATCTTTCTCTGAAAATGATGC 496
Query 480 CTTTTTTGCATGGACGTTCGAAAAAAGGCATCCTCTATGGCAAACACTTTTGTCCTTCTT 539
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 497 CTTTTTTGCATGGACGTTCGAAAAACGGCATCCGCTATGGCAAACGCTTTTGTCCTTCTT 556
Query 540 CTGGCCTGTATTGACTCTTGCAATTTGTTTGTTTCCTGTGTACCCACACCGTTGCAAACT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 557 CTGGCCTGTATTGACTCTTGCAATTTGTTTGTTTCCTGTGTATCCACACCGTTGCAAACT 616
Query 600 AATTGTACTCTACTCATGCGCGGGCATTCTTTTGATGATTCTCTCCTTGCTTTTCGTGAG 659
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 617 AATTGTACTCTACTCATGTGCGGGCATTCTTCTGATGATTCTCTCCTTACTTTTCGTGAG 676
Query 660 AGCAGTTGCTTTCGGTGCTATGTGGATTCTTTTGGGAAAGCGTGTCTGGTTCTTCCCCAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGCAGTTGCTTTCGGTGCTATGTGGATTCTTTTGGGAAAGCGTGTCTGGTTCTTCCCCAA 736
Query 720 CATTCTAGCCGAGGAAGCCACATTGAAGGAACTGTTCCGTTTCTGGCCAAAGAAAGACGA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CATTCTAGCTGAGGAAGCCACATTGAAGGAACTGTTCCGTTTCTGGCCAAAGAAAGACGA 796
Query 780 GGAAGAACCGCCCAAGTGGACATCTCGACTTTTCTACACAGTAGTGGCTATTGTTGTTGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GGAAGAACCGCCCAAGTGGACATCTCGACTTTTCTACACAGTAGTGGCTATTGTTGTTGT 856
Query 840 CATGCTGCTTAGGCGCCATGCCCCTGATGAAGCTGCTCGGGCCAGGTACCAAAGAAGGAT 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CATGCTGCTTAGGCGTCATGCCCCTGATGAAGCTGCTCGGGCCAGGTACCAAAGAAGGAT 916
Query 900 GTCCAACATCATTGATGATGTCCTTGAGTGGTCACCAAAGCTAGCACTATCTGGTTTAAT 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 917 GTCCAACATCATTGATGATGTCCTTGAGTGGTCACCAAAGCTAGCACTTTCTGGTTTGAT 976
Query 960 GGAGAATCAGCAACCTGTGAACATCACAGATGCGGCAAACAACTCCTCAGATTCAGCAGG 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 977 GGAGAATCAGCAACCTGTAAACATCACAGATGCGGCAAACAACTCCTCAGATTCAGCAGG 1036
Query 1020 T--TCC-GACCAGACTGAAGAGGTCAACCTAGACGAAACTCAAGGCGAGGACCTAGACGA 1076
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1037 AGGTCCCGACCAGACTGAAGAGGTCGACCTAGATGAAACTCAAGGCGAGGACCTAGACGA 1096
Query 1077 AACTCAAGGCGAGGAGGAAGCTGAAGGTTGGACTGACTCTGATCTaaaaacataaaaaaa 1136
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1097 AACGCAAGGCAAGGAGGAAGCTGAAGGTTGGACTGACTCTGATCTTAAAACATAAAAAAA 1156
Query 1137 c-aaaaTATAGAAACGAAAGTTCATTGTAACAATAAGTCAGCTTAAGTGACCAAGACGAG 1195
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1157 CCAAAATATAGAAACGAAAGTTCATTGTAACAATAAGTCAACTTAAGTGACCAAGACGAG 1216
Query 1196 GTGAGTTCTT-ATAAGAAAGTCTTGAAAGATTTTGTGGTACTTCATTACTCTTTTTCAAT 1254
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| || |
Sbjct 1217 GTGAGTTCTTTATAAGAAAGTCTTGAAAGATTTTGTGGTACTCCATTACTCCTTTACATT 1276
Query 1255 TTGACACAATCTGGAATTTAGCTCTCAATCACAGTTTTGTATTCGAAACTT 1305
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1277 TTGACACAATCTGGAATTTAGCTCTCAATCACAGTTTTGTATTCCAAACTT 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5