BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479621
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1733 0.0
> AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331721-7334029 FORWARD LENGTH=1423
Length=1423
Score = 1733 bits (938), Expect = 0.0
Identities = 1087/1157 (94%), Gaps = 18/1157 (2%)
Strand=Plus/Plus
Query 1 AAGCAAAAAAGAGTTGCCATGGAAGCTCTTATTGCTCCCACTTCCTTCTTCCTCCCCATC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 AAGCAAAAAAGAGTTGCCATGGAAGCTCTTATTGCTTCCACTTCCTTCTTCGTCCCCATC 60
Query 61 TCCAACTC-T--TCCTCACACATTATCAATAACAGATTCTTCCCTTCATTTTCTTCTCCC 117
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCCAACTCTTCCTCCTCACACATTATCAATAACAGATTCTTCCCTTCATTTTATTCTCCC 120
Query 118 AACTTAAATTTGGGGACTTTTCGGAAAACTTATACCTCCTTGTCACCATCACACATCGTC 177
||||||||||| ||||||||||||||||| | ||||||||| |||||||| |||||
Sbjct 121 AACTTAAATTTCGGGACTTTTCGGAAAAC---T---TCCTTGTCATCATCACACCTCGTC 174
Query 178 TTCTCCTCTTCTGCAATTTCCGCACCACCTTCTTCTACTGCTCCTTCTACCCGAAACAGC 237
||||| |||||||||||||||||||| ||||||||||||| | | | ||| |||||||||
Sbjct 175 TTCTCATCTTCTGCAATTTCCGCACCGCCTTCTTCTACTG-TTC-T-TACTCGAAACAGC 231
Query 238 TATTGGATGGTGTTATTGGATAAACCTCCGCAATGGGTTTCTTCCAAATCAGACATCGTT 297
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 232 TATTGGATGGTGTTATTGGATAAACCTCCGCATTGGGTTTCTTCCAAATCAGCCATGGTA 291
Query 298 GATTATTATGTCGAGATTCTTGCGAAAGTACTGGGAAACGAAAAAGATGCCCAAGTGAGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 292 GATTATTATGTCGAGATTCTTGCGAAAGTACTGGGAAACGAAAAAGATGCGCAAGTGAGT 351
Query 358 ATATATGATGCTTCCTTTGATACCCATTTCGGGTTTTGTTGTCATATCGACGAAGATGCC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATATATGATGCTTCCTTTGATACCCATTTCGGGTTTTGTTGTCATATCGACGAAGATGCT 411
Query 418 TCACGCCAGCTCGCTTGTTTACCTGGAGTAGTGTCTGTTAGACCTGAAGC-GGGTTACAG 476
||||| ||||||||| |||||||||||||||||||| ||||||||||| | || ||||||
Sbjct 412 TCACGACAGCTCGCTAGTTTACCTGGAGTAGTGTCTATTAGACCTGAA-CAGGATTACAG 470
Query 477 TTCAGAGAAGAAGAATTATGGTTTTGGGAATCAGACATGTGTTTCATTGTTTGATCATGG 536
||||||||||||||||||||| |||| | || | | ||||||||||||||||||||||
Sbjct 471 TTCAGAGAAGAAGAATTATGGCATTGGTAGCCATAAAGGTGTTTCATTGTTTGATCATGG 530
Query 537 GACAGTGAAACATTGGATGGTTA-GAATAGATAAGCCAGGAGTTGGAATTGTTACTAAAG 595
|||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 531 GACAGTAAAACATTGGATGG-TACGAATAGATAAGCCAGGAGTTGGGATTGTTACTAAAG 589
Query 596 CACAGATGGTTGATCATTGTGTTCAATTGCTATCCAAGGTTTTGTGCAATGAAAAGGATG 655
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 590 CACAGATGGTTGATCATTGTGTTCAATTGCTATCCAAGGTTTTGTGGAATGAGAAGGATG 649
Query 656 CACAGATGTGTCTTTATCATGTTTCCTGGCAGTCTGATTTCGGATTTTGTTGTGATCTCG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CACAGATGTGTCTTTATCATGTTTCCTGGCAGTCTGATTTCGGATTTTGTTGTGATCTCG 709
Query 716 ATGAGAA-CAGTGCCGTGGAGTTAGCTGGCGTACCTGGTGTTCTTGCGGTTGTTCCTGAT 774
|||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 710 ATGA-AAGAAGTGCTGTGGAGTTAGCTGGCGTACCTGGTGTTCTTGCTGTTGTTCCTGAT 768
Query 775 AACAGTTTCGAGTCACTAAACAAACACTATGAAGGGGATAGTACACAAGCTTCACGAGAT 834
|||||||||||||||||||||||| |||||||||| |||||||| |||| |||| |||||
Sbjct 769 AACAGTTTCGAGTCACTAAACAAAGACTATGAAGGCGATAGTACGCAAGATTCAAGAGAT 828
Query 835 CAAGATGATTCAGAGTCTCCTCCCGTAAAGACGAAGAAGCTGTTTATAACTGGACTGTCT 894
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 829 CAAGATGATTCAGAGTCTCCTCCCGTAAAGACAAAGAAGCTGTTTATAACTGGACTGTCT 888
Query 895 TTCTACACATCTGAGAAGACATTACGTGCAGCATTTGAAGGGTTTGGTGAACTAGTGGAA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCTACACATCTGAGAAGACATTACGTGCAGCATTTGAAGGGTTTGGTGAACTAGTGGAA 948
Query 955 GTCAAAATAATTATGGACAAGATATCAAAGAGATCAAAAGGCTATGCCTTTCTAGAGTAC 1014
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 949 GTCAAAATAATTATGGACAAAATATCGAAGAGATCAAAGGGCTATGCCTTTCTAGAGTAC 1008
Query 1015 ACGACAGAGGAAGCCGCAAGCACTGCACTAAAAGAGATGAATGGAAAGATTATTAATGGG 1074
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 1009 ACGACAGAGGAAGCCGCAGGCACTGCACTAAAAGAGATGAATGGAAAGATTATCAACGGG 1068
Query 1075 TGGATGATAGTAGTAGATGTAGCCAAGACCAAACCATTCAGGCAAAACAGAAGTCAACTG 1134
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1069 TGGATGATAGTAGTAGATGTAGCCAAGACCAAACCGTTCAGGCAAAACAGAAGTCAACCA 1128
Query 1135 AGTTTGGGGTTCTAGAA 1151
||||| ||| |||||||
Sbjct 1129 AGTTTCGGGCTCTAGAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5