BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479629 Length=2226 Score E Sequences producing significant alignments: (Bits) Value AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3567 0.0 > AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399151-7402436 FORWARD LENGTH=2221 Length=2221 Score = 3567 bits (1931), Expect = 0.0 Identities = 2137/2233 (96%), Gaps = 27/2233 (1%) Strand=Plus/Plus Query 1 TTACTCTGAATATGGATCCGGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60 ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTACTGTGACCATGGATCCAGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60 Query 61 TAGAACCAGACTTCGCTTCAAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTACGA 120 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 61 TAGAACCAGATTTCGCTTCCAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTAAGA 120 Query 121 GAGATTTGATGCGTTTGGCTCTTGGACCAGACACTCTCTTGCAGTCCGTTTGTCTCAAAG 180 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 CAGATTTGATGCGTTTGGCTCTTGGACCAGAGACTCTCTTGCAGTCCGTTTGTCTCAAAG 180 Query 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCGTCGCCATTGAACC 240 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCTTCGCCATTGAACC 240 Query 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTGTCTCAGTCTTCACCGGGAAATG 300 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTCTCTCACTCTTCACCGGGAAA-- 298 Query 301 GGTTTGTGGAGTTTTCGAGGAACAACCCTTTGTCTCCTTC-TTTGACTACTCCTGGTTCA 359 ||| |||||||||| ||||||||||||||||| |||| |||||||||||||| Sbjct 299 ------TGG-GTTTTCGAGG---AACCCTTTGTCTCCTTCTTTTG-CTACTCCTGGTTCA 347 Query 360 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 407 Query 420 TCTAACGGTGGTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 479 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 TCTGACGGTGCTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 467 Query 480 CTAGGGAACTACTTGTCGTTTCTTAACGAGTCTTCTTCGAAGAATAACGACGAATCTCTG 539 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 468 CTAGGGAACTACTTGTCGTTTCTTAACGAATCTTCTTCGAAGAATAACGACGAATCTCTG 527 Query 540 GATCCGTTTGGGTTCTCTGCTGATAATGGCGATGCCCATTTGCATAAGAGGAGTTTCTCT 599 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 528 GATCCGTTTGGGTTCTCGGCTGATAACGGCGATGCCCATTTGCATAAGAGGAGTTTCTCA 587 Query 600 GCCAGTGATGCTTGTTTCGGGTCAGAGGAGCCCGGATTTGGCGGCGGCGGTTACAATAGG 659 ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 588 GCCAGTGATGCTTGTTTTGGGTCAGAGGAGCCCGGATTTGGTGGCGGGGGTTACAACAGG 647 Query 660 TTCCCTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 719 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 TTCCTTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 707 Query 720 TATGTTTCCAGACAGCAAGAGGAGATGGTGAGGATGAAGATGGCTCAGAGGCAGCGAATG 779 |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 708 TATGTTTCTAGACAGCAAGAGGAGATTGTGAGGATGAAGATGGCTCAGAGACAGCGAATG 767 Query 780 GCCGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAAAAAGGCCTCAAT 839 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 768 GCTGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAGAAAGGCCTCAAT 827 Query 840 TTTCTCTTGCATCAACGTAATGCGCATAGATCAGGAGCAGGACAATATGGGGAAGAGGGT 899 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 828 TTTCTCTTGCATCAGCGTAATGCGCATAGATCAGGAGCAGGACAATTTGGGGAAGAGGGT 887 Query 900 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGAATGGGAGATAAA 959 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 888 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGGATGGGAGATAAA 947 Query 960 TCTAACTCTGCTTCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1019 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TCTAACTCTGCATCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1007 Query 1020 GAAGATGTCTCCAATTATTTTGGCACTTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1079 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1008 GAAGATGTCTCCAATTATTTTGGCAATTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1067 Query 1080 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTGTCCACTCTGAAACTGTGAGAATCATA 1139 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1068 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTCTCCACTCTGAAACTGTGAGAATCATA 1127 Query 1140 TTGGCTAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCGTACAAG 1199 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1128 TTGGCCAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTTGTTAAACCGTACAAG 1187 Query 1200 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1247 Query 1260 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGAATCT 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1248 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGATTCT 1307 Query 1320 CTTCTCTCACCAAGGATGTTTTCGAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1379 | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1308 CATCTCGCACCAAGGATGTTTTCTAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1367 Query 1380 GCTGACCTGCAACAAGCAATAGAATTCCAGAGGAGAAGATTTCTGAATCTGCAGTTGCCC 1439 ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| Sbjct 1368 GCTGACCTGCAACAAGCAATAGAATTCCAAAGGAGAAGATTTTTGAGTCTGCAGTTGCCC 1427 Query 1440 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCTATTGGATCTCCCGTT 1499 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1428 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCCATTGGATCCCCCGTC 1487 Query 1500 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAACACCAGTGATGAA 1559 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1488 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAGCACCAGTGATGAA 1547 Query 1560 GTCTTCGAAGGTAATGGTGATTCAGGACATTTTCAGTCTGAAGCAACCCGAGCTTTTCTG 1619 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1548 GTCTTCGAAGGTAATGGTGATTCAGGACAT---CAGTCTGAAGCAACCCGAGCTTTTCTG 1604 Query 1620 AGTGATACTGGTCACAACAGCAGCCAAGAACGTGTTTACAATAACCATCTCAACAAAGGG 1679 |||||||||||||| |||| |||||||||||||| |||||||| |||||| ||||||||| Sbjct 1605 AGTGATACTGGTCATAACATCAGCCAAGAACGTGGTTACAATAGCCATCTTAACAAAGGG 1664 Query 1680 CAAGAGACAAGTCTGGAGAACGCTCTGCCTGATAGCTTCTTTGCTTCCCCATCGAAGACC 1739 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 1665 CAAGAGACAAGTCTGGAGAATACTCTGCCTGATAGCTTCTTTGCTTCCCCATCAAAGACA 1724 Query 1740 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTAC-ACTCGCTGTTACTAC 1798 |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| Sbjct 1725 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTACTA-TCTCTGTTACTAC 1783 Query 1799 AGAAAATAAGGCAGCCTCGTCAATTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAG-G 1857 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1784 AGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAGAG 1843 Query 1858 AAGAAAGTGAGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGGAAGAAGT 1917 | ||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1844 A-GAAAGCGTGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGCAGGAAGT 1902 Query 1918 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGAAGGTTTTATAACATGGAACAGAAAGAA 1977 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1903 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGCCGGTTATATAACATGGAACAGAAAGAA 1962 Query 1978 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1963 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2022 Query 2038 CTGCAATAGAAATTTACAGCTAAGTACTAACCTCGACAAA-GCATTGATAGGCAGAACAA 2096 ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2023 ATGCAATAGAAATT-ACAGCTAAGTACTAACCTCGACAAAAGCATTGATAGGCAGAACAA 2081 Query 2097 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTC-CGTCTGTTCATCGATGATTGTTT-AC 2154 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 2082 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTTTCGTCTGTTCATCGATGATTGTTTTAC 2141 Query 2155 CTTTTTACCAGGTCATAAGCCCTGGTTCTGG-ACAAGGCTACTTCAGTTGTCAATATAGA 2213 ||||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 2142 CTTTTTACCGGGTCACAAGCCCTGGTT-TGGGACAAGGCTACTTCAGTTGTCAATATAGA 2200 Query 2214 TGAATGTCTTTTT 2226 ||||||||||||| Sbjct 2201 TGAATGTCTTTTT 2213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110441199000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5