BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479629
Length=2226
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3567 0.0
> AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399151-7402436 FORWARD LENGTH=2221
Length=2221
Score = 3567 bits (1931), Expect = 0.0
Identities = 2137/2233 (96%), Gaps = 27/2233 (1%)
Strand=Plus/Plus
Query 1 TTACTCTGAATATGGATCCGGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60
||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACTGTGACCATGGATCCAGGAGATCCTACTTCGATACTTTTCACAAAGATCAGAACTT 60
Query 61 TAGAACCAGACTTCGCTTCAAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTACGA 120
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TAGAACCAGATTTCGCTTCCAAAATCATTGGTTACTTGCTTTTACAGGACTTGGGTAAGA 120
Query 121 GAGATTTGATGCGTTTGGCTCTTGGACCAGACACTCTCTTGCAGTCCGTTTGTCTCAAAG 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CAGATTTGATGCGTTTGGCTCTTGGACCAGAGACTCTCTTGCAGTCCGTTTGTCTCAAAG 180
Query 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCGTCGCCATTGAACC 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CTAAATCTGCTTTAGGTCTTTCTTCTAATGGATCTTCTTCTGCTTCTTCGCCATTGAACC 240
Query 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTGTCTCAGTCTTCACCGGGAAATG 300
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 CTATCTCCAGACCCATTAACATCCACCGTCATTCTCTCTCTCACTCTTCACCGGGAAA-- 298
Query 301 GGTTTGTGGAGTTTTCGAGGAACAACCCTTTGTCTCCTTC-TTTGACTACTCCTGGTTCA 359
||| |||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 299 ------TGG-GTTTTCGAGG---AACCCTTTGTCTCCTTCTTTTG-CTACTCCTGGTTCA 347
Query 360 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTCGGAAGTAACCCTAACATGATTTCGAGTCCGTTTCAAGCAAGTTCGTCTCTTTTTGCT 407
Query 420 TCTAACGGTGGTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 479
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TCTGACGGTGCTGCTGCTGGTGATTCCACTGGAAACGGCGATTTCCTCGATGAGCAGCAA 467
Query 480 CTAGGGAACTACTTGTCGTTTCTTAACGAGTCTTCTTCGAAGAATAACGACGAATCTCTG 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 CTAGGGAACTACTTGTCGTTTCTTAACGAATCTTCTTCGAAGAATAACGACGAATCTCTG 527
Query 540 GATCCGTTTGGGTTCTCTGCTGATAATGGCGATGCCCATTTGCATAAGAGGAGTTTCTCT 599
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 GATCCGTTTGGGTTCTCGGCTGATAACGGCGATGCCCATTTGCATAAGAGGAGTTTCTCA 587
Query 600 GCCAGTGATGCTTGTTTCGGGTCAGAGGAGCCCGGATTTGGCGGCGGCGGTTACAATAGG 659
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 588 GCCAGTGATGCTTGTTTTGGGTCAGAGGAGCCCGGATTTGGTGGCGGGGGTTACAACAGG 647
Query 660 TTCCCTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 719
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TTCCTTCACGGTGGTTTAGGTGATGATTTTGATTCTCCTGGTGGTTTTGGCTCGCCGGAT 707
Query 720 TATGTTTCCAGACAGCAAGAGGAGATGGTGAGGATGAAGATGGCTCAGAGGCAGCGAATG 779
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 708 TATGTTTCTAGACAGCAAGAGGAGATTGTGAGGATGAAGATGGCTCAGAGACAGCGAATG 767
Query 780 GCCGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAAAAAGGCCTCAAT 839
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 768 GCTGCTGCTCAGTACTTGGCGGCTACTGGTTCTCCAATGTCGTATGAGAAAGGCCTCAAT 827
Query 840 TTTCTCTTGCATCAACGTAATGCGCATAGATCAGGAGCAGGACAATATGGGGAAGAGGGT 899
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 828 TTTCTCTTGCATCAGCGTAATGCGCATAGATCAGGAGCAGGACAATTTGGGGAAGAGGGT 887
Query 900 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGAATGGGAGATAAA 959
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 888 TACTGGTTTGGTAGTCCAGGCCGGCATGAAAGGGATGAGTTTATGGGGATGGGAGATAAA 947
Query 960 TCTAACTCTGCTTCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TCTAACTCTGCATCTAAACAGATTTACTTGACATTTCCAGCTGACAGCTCCTTCACAGAT 1007
Query 1020 GAAGATGTCTCCAATTATTTTGGCACTTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1008 GAAGATGTCTCCAATTATTTTGGCAATTTTGGACCAGTGCAAGATGTTAGGATTCCATAC 1067
Query 1080 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTGTCCACTCTGAAACTGTGAGAATCATA 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 CAGCAGAAACGGATGTTTGGGTTTGTCACTTTTCTCCACTCTGAAACTGTGAGAATCATA 1127
Query 1140 TTGGCTAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCGTACAAG 1199
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 TTGGCCAGAGGAAATCCTCATTTCATCTGTGACTCACGTGTGCTTGTTAAACCGTACAAG 1187
Query 1200 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GAGAAGGGAAGAATCCTTGAAAAGAGGCAGCAGCAACAACTGCTGCAGCAGATGGAGAGA 1247
Query 1260 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGAATCT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 GGAAACTTTTCTCCTGGTTCAAGTCCATCTGGAATGGATTCCAGGGATCTCTTTGATTCT 1307
Query 1320 CTTCTCTCACCAAGGATGTTTTCGAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1379
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1308 CATCTCGCACCAAGGATGTTTTCTAACACACAGGAGATGATGAGGAGAAAAGCTGAGCAA 1367
Query 1380 GCTGACCTGCAACAAGCAATAGAATTCCAGAGGAGAAGATTTCTGAATCTGCAGTTGCCC 1439
||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 1368 GCTGACCTGCAACAAGCAATAGAATTCCAAAGGAGAAGATTTTTGAGTCTGCAGTTGCCC 1427
Query 1440 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCTATTGGATCTCCCGTT 1499
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1428 GACATGGACAGTGAATCGTTTCTCCATCACCAGCGTAGTCTTTCCATTGGATCCCCCGTC 1487
Query 1500 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAACACCAGTGATGAA 1559
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1488 CATTTTTCCCCTCGTGTCAATCAAAGCATGCTCTTTCGATCAGAAAGCACCAGTGATGAA 1547
Query 1560 GTCTTCGAAGGTAATGGTGATTCAGGACATTTTCAGTCTGAAGCAACCCGAGCTTTTCTG 1619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1548 GTCTTCGAAGGTAATGGTGATTCAGGACAT---CAGTCTGAAGCAACCCGAGCTTTTCTG 1604
Query 1620 AGTGATACTGGTCACAACAGCAGCCAAGAACGTGTTTACAATAACCATCTCAACAAAGGG 1679
|||||||||||||| |||| |||||||||||||| |||||||| |||||| |||||||||
Sbjct 1605 AGTGATACTGGTCATAACATCAGCCAAGAACGTGGTTACAATAGCCATCTTAACAAAGGG 1664
Query 1680 CAAGAGACAAGTCTGGAGAACGCTCTGCCTGATAGCTTCTTTGCTTCCCCATCGAAGACC 1739
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1665 CAAGAGACAAGTCTGGAGAATACTCTGCCTGATAGCTTCTTTGCTTCCCCATCAAAGACA 1724
Query 1740 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTAC-ACTCGCTGTTACTAC 1798
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1725 GGTGAAACCCAACACCCCGAGTTTGAGAAAGAGAATTGTGCTACTA-TCTCTGTTACTAC 1783
Query 1799 AGAAAATAAGGCAGCCTCGTCAATTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAG-G 1857
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1784 AGAAAATAAGGCAGCCTCGTCACTTCAATCAGCCTAGCAATTGGTTCGATAGAAGCAGAG 1843
Query 1858 AAGAAAGTGAGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGGAAGAAGT 1917
| ||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1844 A-GAAAGCGTGAAAAGTTTCTTTGGTTGCAGAAAAGTAGAGACTGATAAAAGCAGGAAGT 1902
Query 1918 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGAAGGTTTTATAACATGGAACAGAAAGAA 1977
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1903 AGAAGAATTTTGTCTATATGTAGAAGCTAAAGCCGGTTATATAACATGGAACAGAAAGAA 1962
Query 1978 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 GGGTAGGGAGACCAGTTAGGATTTTACATATCTCGAAAAAGGCAGTTGTGGAATGCCAAT 2022
Query 2038 CTGCAATAGAAATTTACAGCTAAGTACTAACCTCGACAAA-GCATTGATAGGCAGAACAA 2096
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2023 ATGCAATAGAAATT-ACAGCTAAGTACTAACCTCGACAAAAGCATTGATAGGCAGAACAA 2081
Query 2097 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTC-CGTCTGTTCATCGATGATTGTTT-AC 2154
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2082 TACAGTGACTGAAACCTTCAAGTTTTAAGTTTTTCGTCTGTTCATCGATGATTGTTTTAC 2141
Query 2155 CTTTTTACCAGGTCATAAGCCCTGGTTCTGG-ACAAGGCTACTTCAGTTGTCAATATAGA 2213
||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2142 CTTTTTACCGGGTCACAAGCCCTGGTT-TGGGACAAGGCTACTTCAGTTGTCAATATAGA 2200
Query 2214 TGAATGTCTTTTT 2226
|||||||||||||
Sbjct 2201 TGAATGTCTTTTT 2213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110441199000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5