BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479631
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21140.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 2305 0.0
AT1G51560.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 963 0.0
> AT3G21140.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr3:7409442-7412225 REVERSE LENGTH=1557
Length=1557
Score = 2305 bits (1248), Expect = 0.0
Identities = 1411/1488 (95%), Gaps = 17/1488 (1%)
Strand=Plus/Plus
Query 2 TATGTATGTGTTTTACAAACCCTACTCTGGAAAAGTCCTAATTCCTAAAGCATTACTTTC 61
||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 6 TATGTGTGTGTTATACAAACCCTACTCTGGAAAAGTCCTAATTCCTAAAGC--TACTTTC 63
Query 62 AACAAAGTCGCCTGAAGCATCTGCC-ATTGTGAAAGATC---AGACTCTTCAAGCTAAAT 117
||||||| ||||||||||||||||| || |||||||||| ||||||||||| | ||||
Sbjct 64 AACAAAGACGCCTGAAGCATCTGCCTATAGTGAAAGATCAGAAGACTCTTCAACCAAAAT 123
Query 118 CTTATTCTCCTCAATCATGGAAGCTCTCTACACTTCAACACACATC-CCCAATTTACAGA 176
||||||||| || | |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 124 CTTATTCTCATCCACCATGGAAGCTCTCTTCACTTCAACACACA-CACCCAATTTACAGA 182
Query 177 CAAAGCCTCTCCTCAAATCTTCGCTGCCCACTTCATCCCAGTCTTCCTGTTGGTTATGTA 236
| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 183 CTAAGCCTCTCCTCAAATCTCCGCTGCCCACTTCTTCCCAGTCTTCGTGTTGGTTTTGTA 242
Query 237 ATTCGCTACCCAAAAAGCAATTCCCGAAGCTGAGAATCAGTAATGGATCAAGTCACGGGC 296
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 243 ATTCGCTACCCAAAACGCAATTCCCGAAGCTGAGACTCAGTAATGGATCAAGTCACGGGC 302
Query 297 TTCGTATACAAGCTCTCTTACATAACGAGACACCAAGTGAAGGCGAAGATAATAATGGGT 356
||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 303 TTCGTATACAAGCTCTCTTACGTAACGAGACGCCAAGTGAAGGTGAAGATAATAATGGGT 362
Query 357 TCGGtttttttCCTGGGGATATCTTCTCTTTATCACAGGAAAAGCTCGGGAGTAATAGCA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTGGTTTTTTTCCTGGGGATATCTTCTCTTTATCACAGGAAAAGCTCGGGAGTAATAGCA 422
Query 417 ATGGTGAAACTTCTCATAGTGTAATCGATGTGGAGGCATCTCTTGCACATCCTC-AGGGG 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 423 ATGGTGAAACTTCTCATAGTGTAATCGATGTGGAGGCATCTCTTGCACATCCTCAAGGTG 482
Query 476 AGTGGAGGAAATCGAGCTGGGCTTTTTAGAACTCCAATATCTGGTGGTGTTCAAAATGCT 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 -GTGGAGGAAATCGAGCTGGGCTTTTTAGAACTCCAATATCTGGTGGTGTTCAAAATGCT 541
Query 536 ACATCAGCTCATGCTTTACCTCGGCCTGCTTTAGCTGTACGGAACTTGTTGGAACAGGCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ACATCAGCTCATGCTTTACCTCGGCCTGCTTTAGCTGTACGGAACTTGTTGGAACAGGCT 601
Query 596 AGGTTTGCTCATCTATGCACAGTGATGTCCAAAATGCACCACCGCAGGGAAGGATACCCA 655
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 602 AGGTTTGCTCATCTGTGCACAGTGATGTCCAAAATGCACCACCGCAGGGAAGGGTACCCA 661
Query 656 TTTGGCTCATTGGTAGATTTTGCACCTGATCGGATGGGACATCCAATATTTTTATTTTCA 715
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 662 TTTGGCTCATTGGTAGATTTTGCACCTGATCGGATGGGGCATCCAATATTTTTGTTTTCA 721
Query 716 CCGTTGGCCATCCACACACGAAATCTCTTGGCTGAACCGAGATGCAGTCTCGTTGTCCAG 775
||| |||||||||||||||||||||||||| |||||| |||||||| |||||||| |||
Sbjct 722 CCGCTGGCCATCCACACACGAAATCTCTTGAATGAACCTAGATGCAGCCTCGTTGTTCAG 781
Query 776 ATACCTGGATGGAGTGGCTTATCTAATGCTAGAGTGACATTATTTGGTGATGTATACCCA 835
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 782 ATACCCGGATGGAGTGGCTTATCGAATGCAAGAGTGACATTATTTGGTGATGTGTACCCA 841
Query 836 TTGTCAGAAGATGAACAGGAGTGGGCTCATAAGCAATATATTGCTAAGCACCCGCACGGG 895
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 842 TTGTCAGAGGATGAACAGGAGTGGGCCCATAAGCAATATATTGCAAAGCACCCGCACGGG 901
Query 896 CCTTCTGAGCAATGGGGAAACTTTCACTATTTTAGAATGCAGAACATAAGTGATATATAT 955
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 902 CCTTCAGAGCAATGGGGAAACTTTCATTATTTTAGAATGCAGAACATAAGTGATATATAT 961
Query 956 TTCATTGGAGGCTTTGGCACGGTCGCTTGGGTTGATGTCAAAGAGTATGAAGCTTTACAA 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 TTCATTGGAGGCTTTGGCACGGTCGCTTGGGTTGATGTCAAAGAGTATGAAGGTTTACAA 1021
Query 1016 CCAGATAAGATAGCTGTTGATGGTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCAGATAAGATAGCTGTTGATGGTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTC 1081
Query 1076 TCGAAACCGCTGAGAGAGCTACTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTAATT 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1082 TCGAAACCGCTGAGAGAGCTACTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTCATT 1141
Query 1136 TCTATAGATAGCAAAGGAATAGATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAA 1195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TCAATAGATAGCAAAGGAATAGATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAA 1201
Query 1196 AGGCTAGCATTTGAGGAAGGTCATGGTGTTGAGACACTAGAAGAAGCTAAATCTGCACTA 1255
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1202 AGGCTAGCATTTGAGGAAGGTCATGGTGTTGAGACACTAGAAGAAGCTAAGTCTGCATTA 1261
Query 1256 TGGAAAGTGATGGAGAAGGTCAAGCTGAATTTGCAGAAATGACAAGCCCCTTTTGCTACT 1315
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TGGAAAGTGTTGGAGAAGGTCAAGCTGAATTTGCAGAAATGACAAGCCCCTTTTGCTACT 1321
Query 1316 CTATACGGGTCCGTTTAAAATAGTAGGACCAATAAAATGTTATCTGATTCCTCTTTTCCT 1375
||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |
Sbjct 1322 TTATACGGGTCCTTTTAAAATAGTAGGACCAATAAAATGTTGTTTGGTTCCTCTTTTCTT 1381
Query 1376 CTTTTTGACTAGCTGAAATTTTGTAGTTTCTTACTTTCT-TCTATGATTTGGCCTCCTTT 1434
||| |||||||||||||||||||||||||||| |||| | ||| | || | ||||| ||
Sbjct 1382 CTTCTTGACTAGCTGAAATTTTGTAGTTTCTTTCTTT-TATCT-T--TT-GACCTCCCTT 1436
Query 1435 TTGTAGAGTAAACAAAATTGGGGGTTTAAAAAACGTCAATTTGGAAAT 1482
|||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1437 TTGTAGAGTAT-CAAAATTGGAGGTTTAAAAAACGTCAATCTGGAAAT 1483
> AT1G51560.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr1:19119635-19121938 REVERSE LENGTH=1523
Length=1523
Score = 963 bits (521), Expect = 0.0
Identities = 917/1105 (83%), Gaps = 40/1105 (4%)
Strand=Plus/Plus
Query 217 GTCTTCCTGTTGGTTATGTAATTCGCTACCCAAAAAGCAATTCCCGAAGCTGAGAATCA- 275
|||||| |||||| | || ||||||| | || |||||| || || ||||||||||
Sbjct 172 GTCTTCTTGTTGGCTCTGCAATTCGCAAGCC---AAGCAAATCATAAAACTGAGAATCAG 228
Query 276 GTAATGGATC-AAGTCACGGG---CTTCGTATACAAGCTCT-CTTACATAACGA-GA--C 327
| || || || || ||| ||| |||||| |||| ||||| ||| | ||||| || |
Sbjct 229 GGAA-GGCTCGAA-TCAGGGGCTTCTTCGTGTACATGCTCTGTTTA-ACAACGAGGAGGC 285
Query 328 ACCAAGTGAAGGCGAAGATAATAATGGGTTCGGtttttttCCTGGGGATATCTTCTCTTT 387
| |||||||| | |||||||| |||||||| ||||| | |||| |||||| ||||||||
Sbjct 286 ATCAAGTGAAAGTGAAGATAAGAATGGGTTTGGTTTGCTACCTGCGGATATTTTCTCTTT 345
Query 388 ATCACAGGAAAAGCTCGGGAGTAATAGCAA-TGGTG-AAA--CTTCTCATAGTGTAATCG 443
| ||||| ||| | || |||||| | || ||||| ||| | | | | | |||| |
Sbjct 346 GCCTCAGGAGAAGTTTGGAAGTAAT-GTAAGTGGTGAAAAGGATAGTGAAAATATAATTG 404
Query 444 ATGTGGAGGCATCTCTTGCACATCCTCAGGGGAGTGGAGGAAATCGAGCTGGGCTTTTTA 503
|||| ||| |||||||||| |||||| | ||||||||| |||||||||||| ||||
Sbjct 405 ATGTAGAGACATCTCTTGCGGTTCCTCA--TG-GTGGAGGAACTCGAGCTGGGCTCTTTA 461
Query 504 GAACTCCAATATCTGGTGGTGTTCAAAATGCTACATCAGCTCATGCTTTACCTCGGCCTG 563
||||||| || |||||||||||||||| || || || ||||| | ||||||||| ||||
Sbjct 462 GAACTCCGATTTCTGGTGGTGTTCAAAGCGCAACCTCTGCTCACGGTTTACCTCGACCTG 521
Query 564 CTTTAGCTG-TACGGAACTTGTTGGAACAGGCTAGGTTTGCTCATCTATGCACAGTGATG 622
||||||||| || |||||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct 522 CTTTAGCTGTTA-GGAACTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACTGTGATG 580
Query 623 TCCAAAATGCACCACCGCAGGGAAGGATACCCATTTGGCTCATTGGTAGATTTTGCACCT 682
|| ||||||||||| || || ||||| ||||||||||| || ||||||||||||||||||
Sbjct 581 TCTAAAATGCACCATCGTAGAGAAGGGTACCCATTTGGATCGTTGGTAGATTTTGCACCT 640
Query 683 GATCGGATGGGACATCCAATATTTTTATTTTCACCGTTGGCCATCCACACACGAAATCTC 742
|||| |||||| || |||||||||| ||||||||||||||| || ||||| || ||| ||
Sbjct 641 GATCCGATGGGGCACCCAATATTTTCATTTTCACCGTTGGCTATTCACACTCGGAATATC 700
Query 743 TTGGCTGAACCGAGATGCAGTCTCGTTGTCCAGATACCTGGATGGAGTGGCTTATCTAAT 802
|| |||||||| ||||||| |||||||| |||||||| ||||||||| ||||||| |||
Sbjct 701 TTAGCTGAACCTAGATGCACCCTCGTTGTTCAGATACCAGGATGGAGTTGCTTATCGAAT 760
Query 803 GCTAGAGTGACATTATTTGGTGATGTATACCCATTGTCAGAAGATG-AACAGGAGTGGGC 861
|| ||||| |||||||| || ||||| ||||||||| ||||||| | | || || |||||
Sbjct 761 GCAAGAGTAACATTATTCGGCGATGTCTACCCATTGCCAGAAGA-GCAGCAAGAATGGGC 819
Query 862 TCATAAGCAATATATTGCT-AAGCA-CCCGCACGGGCCTTCTGAGCAATGGGGAAACTTT 919
|||||||| |||| || | ||||| | | || || ||||| | |||||||||||||||
Sbjct 820 CCATAAGCAGTATA-TGTTGAAGCATCAC-CAAGGACCTTCCCAACAATGGGGAAACTTT 877
Query 920 CACTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGCTTTGGCACGGTC 979
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 878 CACTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGTTTTGGCACTGTC 937
Query 980 GCTTGGGTTGATGTCAAAGAGTATGA-AGCT-TTACAACCAGATAAGATAGCTGTTGATG 1037
|| ||| | ||||||| ||||| || | || || || ||||||||||||||||||||||
Sbjct 938 GCGTGGATCAATGTCAATGAGTACGAGA-CTCTT-CAGCCAGATAAGATAGCTGTTGATG 995
Query 1038 GTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTCTCGAAA-CCGCTGAGAGAGCTA 1096
| ||||||| || || |||||||| ||||| |||||||| ||| || || |||||| ||
Sbjct 996 GAGGTGAGCAAAATCTGAAGGAACTTAATGCAATCTTCTC-AAAGCCACTTAGAGAGTTA 1054
Query 1097 CTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTAATTTCTATAGATAGCAAAGGAATA 1156
|||||| |||| | ||| |||||||||||||| | |||||||||||||||||||| ||
Sbjct 1055 TTGTCTAGTGAAGCCGAGCTAGACGATGCTGCTATCATTTCTATAGATAGCAAAGGGATT 1114
Query 1157 GATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCATTTGAGGAAGGT 1216
||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1115 GATATAAGGGTTCGTCAAGGTGCTCAGTTTAAGATACAAAGGCTAGCCTTTGAGGAAAGT 1174
Query 1217 CATGGTGTTGAGACACTAGAAGAAGCTAAATCTGCACTATGGAAAGTGATGGAGAAGGTC 1276
|||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||| |
Sbjct 1175 CATGGTGTTGAGACTTTAGAAGAAGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGC 1234
Query 1277 AAGCTG-A-A-TTTGCAGAAATGAC 1298
||| || | | ||||||||||||||
Sbjct 1235 AAGTTGCACAATTTGCAGAAATGAC 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5