BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479634
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21170.1 | Symbols: | F-box and associated interaction doma... 1663 0.0
AT3G21130.1 | Symbols: | F-box and associated interaction doma... 60.2 4e-08
> AT3G21170.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7419976-7421160 FORWARD LENGTH=1185
Length=1185
Score = 1663 bits (900), Expect = 0.0
Identities = 1096/1191 (92%), Gaps = 12/1191 (1%)
Strand=Plus/Plus
Query 1 ATGATGTTCAACTACCTTCCGGAGGATATGGTTGTAGAGATACTCTCTAGGGTTCCAGCT 60
|||| ||||||| |||||||||||||| |||| || |||||||||||||| ||||| |||
Sbjct 1 ATGACGTTCAACGACCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCT 60
Query 61 GTATCTCTGGCACGGTTACGATCAACATCCAAAATATGGAACGCTTTGATCAAAGATGGG 120
|||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 61 GTATTTCTAGCACGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGG 120
Query 121 AGACTTGCTAAGAAGCACTCTGCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACTTTCTAAGAAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATT 180
Query 181 GATCATAGGGTTTATTTAGTGAGATCCAATCTTCGTGAAATTCACAATAACGTTGCTCCA 240
||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 181 GATCATAAGGTTTATTCAGTGAGATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCA 240
Query 241 TTTGTT-TCTGTAACATGTCATTTTAGCCTAAAAGAACGTCTTTCTAA-ACATTTTTCAA 298
| |||| | ||||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 241 TATGTTAAC-ATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATA-ATTATTCAA 298
Query 299 CAGAAGTCGACATACGG-GATGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357
|||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGAAGTCGATATA-GGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAG 357
Query 358 GACTATAGACTGGTAGTTTGGAATCC-ATGTTCAGGTGAAACCAGGTGGATTCAACCAAG 416
|||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 358 GACTATAGACTGGTGGTTTGGAATCCGCT-TTCAGGTGAAACAAGGTGGATTCAACCAAG 416
Query 417 AGATTCCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATTTTGCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAA 476
Query 477 AATCTTGAGGCAGGAACTTCTTATCAATCCTAGCCAAGAATC-TTACGTGTACAACATCG 535
|||||||||||||| | |||||||||||||||| ||||| | |||||||||||||||||
Sbjct 477 AATCTTGAGGCAGGGTCGTCTTATCAATCCTAGCGAAGAA-CGTTACGTGTACAACATCG 535
Query 536 TGGGGGAGGATTTTCTTATCAATAATAACCAAGAACGTTACGAGTACGAAATCTATGACT 595
||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 536 TGGGGGAGGATCTTGTTATCAACAATAGCCAAGAACGTTACGAGTACGAAATCTATGACT 595
Query 596 TTACCTCTAATTCGTGGAGGGGTGTTGGTGTGACCACCGGCCTGTTCAATCCAAATATTA 655
||| |||||||||||||||| || ||||||||| ||||||| |||||||||||||||| |
Sbjct 596 TTAACTCTAATTCGTGGAGGAGTATTGGTGTGATCACCGGCTTGTTCAATCCAAATATCA 655
Query 656 CCACTGGCATGTCTGTAAACGGAATCATTTACTGGTTTGATATTACTGAACAATTTTTAC 715
||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 656 CCAGTGGCGTGTCTGTAAATGGAATCACTTACTGGTTTGATATTAGTGAACAATTCTTAC 715
Query 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGATGATAGTC 775
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 TAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGGTGATAGTC 775
Query 776 ATTTGGCTTTATCTGTGACTCGACAAGGGAAACAACTTTGTATGTTATCTACTCATTCCT 835
||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |
Sbjct 776 ATTTGGCTTTATCAGTGACTAGACAAGGGAAACGACTTTGTATGTTATCTACTAATTACA 835
Query 836 CATATGTGACCGAAACAAACGTTAACTTATGGATAGCAACGAAGAGTAGTGAGAACACC- 894
|||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 CATACGTAACCGGAACAAACGTTAACTTATGGATAGCAACGAAGACTAGTGAGAACACCA 895
Query 895 GAAGCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGTGGAGTTGGTCTACGCTATCGT 954
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 896 GA-GCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGCGGAGTTGGTCTACGCTATCGT 954
Query 955 TGTCATTTTAGCGAAGGGGTGAGTTTCTTCGCATACCAGGTGAAGGAGAAGATTGTTGTA 1014
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 955 TGTCATTTTAGGGAAGGGGTGAGTTTCTTCGCATACCAAGTTAAGGAGAAGATTGTTGTA 1014
Query 1015 GTGTCTTGTCATAGACCCAACCGGCACTCCAAGAACATCATACACATTGCGGGACATGGT 1074
|| |||||||||||||||||||||||||||||| ||||||||||||||| || | ||| |
Sbjct 1015 GTTTCTTGTCATAGACCCAACCGGCACTCCAAGGACATCATACACATTGTGGAAAATGAT 1074
Query 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACACGAATTTTCTCCTACACCA 1134
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1075 AAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACATGAATTATCTCCTACCCCA 1134
Query 1135 CTTCTCCTCGTATATGTTCCAAGTTTGGTTCAAATCCAACATGGTATCTAG 1185
| ||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1135 CGTCTCCTCATATATGTTCCAAGTTTGGTTCAAATTCAACATGGTATTTAG 1185
> AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104
Score = 60.2 bits (32), Expect = 4e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1147 TATGTTCCAAGTTTGGTTCAAATCCAACATGGTATCTA 1184
||||||||||||||||||||||||||||| |||||||
Sbjct 1066 TATGTTCCAAGTTTGGTTCAAATCCAACAAAGTATCTA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5