BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479637
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21175.1 | Symbols: ZML1, TIFY2B, GATA24 | ZIM-like 1 | chr3... 1816 0.0
AT1G51600.1 | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1... 719 0.0
> AT3G21175.1 | Symbols: ZML1, TIFY2B, GATA24 | ZIM-like 1 | chr3:7422036-7424905
FORWARD LENGTH=1397
Length=1397
Score = 1816 bits (983), Expect = 0.0
Identities = 1168/1257 (93%), Gaps = 14/1257 (1%)
Strand=Plus/Plus
Query 48 ACCCTTTTGGCTCATTGTAGAATCAAATCCTCTTTATCTTTCACTGTTTCGCGTGAATTA 107
||| |||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 77 ACCTTTTTCTCTCTTTGTATAATCAAATCCTCTTTATCTTTCATTGTTTCGCGTGAATTA 136
Query 108 GCTCTGAAAAGGTTCTTCATTCTTCTCCCTTGGATTGCTCTGAACAAAAGAATAAAGACC 167
|||||| ||||| |||||||||||||| |||||||| ||||| ||||||||| |||||||
Sbjct 137 GCTCTGCAAAGGCTCTTCATTCTTCTCGCTTGGATTCCTCTGCACAAAAGAAAAAAGACC 196
Query 168 ATGGATGAACTTCATGGAA-ACAATGGTCGTATGCACATTGGCGTAGCGCAAGATCCAAT 226
|||||||| |||||||||| | |||||||| ||||||||||| ||||||||| |||||||
Sbjct 197 ATGGATGATCTTCATGGAAGA-AATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAAT 255
Query 227 GCATGTGCAGTATGATCATCACGGCTTGCACCATATCGACAATGGAAACGGTATGATGGA 286
||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 256 GCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACAATGAAAACAGTATGATGGA 315
Query 287 TGAACATACTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCCCACCCTGG 346
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 316 TGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGG 375
Query 347 AAACGCAGCTGATAATCGCGGTGAAGTTGTAGACCGTGGTATTGAAAATGGAGATCAATT 406
|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 376 AAACTCAGCTGATAATCGTGGTGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATT 435
Query 407 GACATTGTCATTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCA 466
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCA 495
Query 467 AGCTGTCCTTTTGTTACTTGGTGGACGTGAAGTACCACAGACACTCCCGACATCCCTAGG 526
|||||| |||||||||||||||||| | ||||||||||| |||||||| ||| |||||||
Sbjct 496 AGCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGG 555
Query 527 ATCACCTCATCAGATCAATAGGGTACTGGGTCTATCTGGTACTCCTCAACGGCTTAGCGT 586
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATCACCTCATCAGAACAATAGGGTACTGGGTCTATCTGGTACTCCTCAACGGCTTAGCGT 615
Query 587 CCCGCAGCGGTTAGCTTCTTTGCTCAGATTTAGGGAGAAACGAAAAGGGAGGAATTTTGA 646
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 616 TCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAAAGGGAGGAACTTTGA 675
Query 647 TAAGACAATTCGCTACACAGTCAGGAAAGAGGTAGCCTTGAGAATGCAACGTAAGAAAGG 706
|||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 676 TAAGACTATTCGCTATACAGTCAGGAAAGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGG 735
Query 707 ACAGTTCACATCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGG 766
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGG 795
Query 767 GTCAAACCAGAACTGGGCCATAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCG 826
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GTCAAACCAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCG 855
Query 827 ACACTGTGGAATAAGTGAGAAGTCAACTCCAATGATGCGACGTGGACCTGATGGGCCAAG 886
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGACGTGGACCTGATGGGCCAAG 915
Query 887 AACACTTTGTAATGCATGTGGACTAATGTGGGCAAACAAGGGAACTCTTAGAGACTTGTC 946
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| | ||
Sbjct 916 AACACTTTGTAATGCGTGTGGACTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATC 975
Query 947 CAAAGTCCCTCCACCTCAAACACCTCAGCATCTACCTGTGAATAAGAATGAGGATC-CAA 1005
|||||||||||| || |||||||||||||||||| || |||||||||||||||| | |||
Sbjct 976 CAAAGTCCCTCCTCCGCAAACACCTCAGCATCTATCTCTGAATAAGAATGAGGA-CGCAA 1034
Query 1006 ATCTTGAGGCTGATCAAATGAATGGA-GTAGCTGATGACATTAGCAACTCACAGTGAGAA 1064
||||||||||||||||||||| |||| ||| ||| ||||||||||||| |||||||||||
Sbjct 1035 ATCTTGAGGCTGATCAAATGA-TGGAAGTAACTGGTGACATTAGCAACACACAGTGAGAA 1093
Query 1065 CTGAGAAACCATTC-AAGCAAGAAATTATCTCAA-CAGAAACAGTT---ATCATTTTCTT 1119
||||||||||||| |||||||||| ||||||| || |||||||| ||||||| | |
Sbjct 1094 CTGAGAAACCATTGGAAGCAAGAAAGGATCTCAAACAAAAACAGTTGTTATCATTT-CAT 1152
Query 1120 TT-ATGATGGAATCGAATCTGAGTTGGGTTTAGGGTTTCTCTGGGTTCATCTGAGTCTTT 1178
|| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
Sbjct 1153 TTGATGATGGAATCGAATCTGAGTTGTGTTTAGGGTTTCTCTGGGTTAATCTCAGTCTAT 1212
Query 1179 GTGGACACCTTTTAATCTTTTACAAATTATAAGATACTCTTCACTTATTTAGAAGCTCAC 1238
|||| ||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1213 GTGGGCACATTTTAGTCTTCTACAAATTATAAGACACTCTTCACTTATTTAGAAGCTCAC 1272
Query 1239 TCATCAGAAAAGaaaaaaaaaaCTTTCCTCAGTGTCTCATCTGTGT-TTTGATTATA 1294
|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct 1273 TCATCAGAAAAGAAAAAAAAAACTTTGCTCAGTCTCTCATCTGTGTGTTTGATTATA 1329
> AT1G51600.1 | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1:19132221-19135541
FORWARD LENGTH=1665
Length=1665
Score = 719 bits (389), Expect = 0.0
Identities = 755/927 (81%), Gaps = 43/927 (5%)
Strand=Plus/Plus
Query 165 ACCATGGATGAACTTCATGGAAACAATGGTCGTATGCACATTGGCGTAGCGCAAGATCCA 224
||||||||||| || ||||||| ||||| ||| ||||||||| | | ||| |||||||||
Sbjct 465 ACCATGGATGACCTACATGGAAGCAATGCTCGAATGCACATTAGAGAAGCTCAAGATCCA 524
Query 225 ATGCATGTGCAGTATGATCATCACGGC-TTGCACCATATCGACAATGGAAACGGTATGAT 283
||||||||||| | ||| ||||| || ||||| || ||| ||||||||| ||||||| |
Sbjct 525 ATGCATGTGCAATTTGAACATCA-TGCTTTGCATCACATCCACAATGGAAGCGGTATGGT 583
Query 284 GGATGA--A--C--AT-A---C--TGATGGTGGGATGGA-TGAAGGAGTGGAGACAGACA 330
||||| | | || | | || ||||||||| || ||| || ||||| |||||||
Sbjct 584 TGATGACCAGGCTGATGATGGCAATGCTGGTGGGAT-GAGTGAGGGTGTGGAAACAGACA 642
Query 331 TTCCTTCCCACCCTGGAAACGCAGCTGATAATCGCGGTGAAGTTGTAGACCGTGGTATTG 390
||||||| ||||||||||| | | |||| ||||| |||||||| || |||||||||| ||
Sbjct 643 TTCCTTCTCACCCTGGAAATGTAACTGACAATCGTGGTGAAGTGGTCGACCGTGGTAGTG 702
Query 391 AA-AATGGAGATCAATTGACATTGTCATTCCAGGGACAAGTTTATGTTTTTGACCGTGTC 449
|| || |||||||| || |||||||| || ||||| ||||| || ||||||||| |||||
Sbjct 703 AACAA-GGAGATCAGTTAACATTGTCTTTTCAGGGCCAAGTCTACGTTTTTGACAGTGTC 761
Query 450 TCGCCTGAGAAGGTTCAAGCTGTCCTTTTGTTACTT-GGTGGACGTGAAGTACCACAGAC 508
| ||||||||||||||||||||| ||| | ||| || ||||| |||||| |||| ||| |
Sbjct 762 TTGCCTGAGAAGGTTCAAGCTGTGCTTCTATTA-TTGGGTGGTCGTGAATTACCTCAGGC 820
Query 509 ACTCCCGACAT-CCCTAGGATCACCTCATCAGATCAATAGGGTACT-GGGTCTATCTGGT 566
| ||| | | |||||||||||||||||||| ||| || ||| | | || || |||||
Sbjct 821 A-GCCCCTCCTGGCCTAGGATCACCTCATCAGAACAACAGAGTA-TCGAGTTTACCTGGT 878
Query 567 ACTCCTCAACGGCTTAGCGTCCCGCAGCGGTTAGCTTCTTTGCTCAGATTTAGGGAGAAA 626
||||||||| || |||| | |||||||| |||||||||||| |||||||| | ||||||
Sbjct 879 ACTCCTCAAAGGTTTAGTATTCCGCAGCGATTAGCTTCTTTGGTCAGATTTCGAGAGAAA 938
Query 627 CGAAAAGGGAGGAATTTTGATAAGACA-ATTCGCTACACAGTCAGGAAAGAGGTAGCCTT 685
|| ||||| |||||||||||||||| | ||||| || |||||| | || |||||||| ||
Sbjct 939 CGGAAAGGAAGGAATTTTGATAAGA-AGATTCGGTATACAGTCCGCAAGGAGGTAGCTTT 997
Query 686 GAGAATGCAACGTAAGAAAGGACAGTTCACATCGGCTAAATCAAGCAATGATGATTCTGG 745
||| |||||||| || ||||| ||||||||||| || || |||| ||||||||| |||
Sbjct 998 GAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAACAATGATGAAGCTGC 1057
Query 746 ATCCACTGGATCGGA-TTGGGGGTCAAACCAGAA-CTGGGCCATAGAAGGGACTGAGACT 803
||| ||||||| | |||||||| || || || ||||||||||||| | | |||| ||
Sbjct 1058 ATCTGCTGGATC-TAGCTGGGGGTCGAATCA-AACCTGGGCCATAGAAAGTAGTGAGGCT 1115
Query 804 CAGAAGCCAGAGGTTTTATGTCGACACTGTGGAATAAGTGAGAAGTCAACTCCAATGATG 863
||| | | |||| | | |||||| ||||||||||| | |||||||||||||||||||||
Sbjct 1116 CAGCATCAAGAGATCTCATGTCGGCACTGTGGAATTGGCGAGAAGTCAACTCCAATGATG 1175
Query 864 CGACGTGGACCTGATGGGCCAAGAACACTTTGTAATGCATGTGGACTAATGTGGGCAAAC 923
||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1176 CGACGTGGACCTGCCGGGCCAAGAACACTTTGCAATGCATGTGGACTTATGTGGGCAAAC 1235
Query 924 AAGGGAACTCTTAGAGACTTGTCCAAAGTCCCTCCACCTCAAACA-CCTCAGCATCTACC 982
||||| || |||| ||||| ||||||| || || ||||||||| || ||| |||| ||
Sbjct 1236 AAGGGTGCTTTTAGGGACTTATCCAAAG-CC-TCT-CCTCAAACAGCC-CAGAATCTTCC 1291
Query 983 TGTGAATAAGAATGAGGATCCAAATCTTGAGGCTGATCA--AA-TGAATGG-A---GTAG 1035
| | ||||||||||| ||| ||||||||||| ||||||| || | |||| | || |
Sbjct 1292 TTTAAATAAGAATGAAGATGCAAATCTTGAGACTGATCATCAAAT-AATGATAACAGTGG 1350
Query 1036 CTGATGACATTAGCAACTCACAGTGAG 1062
| ||||||| ||||||||||||||||
Sbjct 1351 CCAATGACATAAGCAACTCACAGTGAG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5