BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479641
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21215.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2721 0.0
> AT3G21215.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7441835-7445303 REVERSE LENGTH=2130
Length=2130
Score = 2721 bits (1473), Expect = 0.0
Identities = 1677/1773 (95%), Gaps = 23/1773 (1%)
Strand=Plus/Plus
Query 46 TTTTTTGATCTCATGGCCGGCGCCGGAATCCACCCTTACCATCAGCAGTGGCCGCCTGCA 105
|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 61 TTTTTTTATCTCATGGCCGGCGCCGGAATCCACCCATACCACCAGCAGTGGCCGCCGGCA 120
Query 106 GGTGCGCCACCTCCTCCCGCTGCAGTATCCTCAGCTGCTCCACCACATCCCCCGCCCATT 165
|||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct 121 GGTGCGCCGCCTCCTCCAGCCGCAGTATCATCAGCTGCTCCACCACATCCGCCGCCCATT 180
Query 166 CATCATCATCATCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTACGAC 225
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CATCACCATCCTCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTATGAC 240
Query 226 GAGCTTCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 285
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCTGCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTG 300
Query 286 AATCTTTTAAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 345
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATCTCTTGAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAG 360
Query 346 CCTATGGGGTTTGCTCTTTTCTCCACGGCTCAGTATGCAATGGCAGCCAAAGATACCCTT 405
|| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 361 CCCATGGGGTTTGCTCTTTTCTCCACAGCTCAGTTTGCAATGGCAGCCAAAGATACCCTT 420
Query 406 CAGCATCTTGTGTTTGATGCTGAGTCGAAGTCTGTGATACATACAGAGATGGCCAAGAAG 465
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CAGCATATGGTGTTTGATGCTGAGTCAAAGTCTGTGATACATACAGAGATGGCCAAGAAG 480
Query 466 AATCTCTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 525
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATCTTTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGC 540
Query 526 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCA-CGCTCC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 541 CTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCATC-CTCC 599
Query 585 ACCTCCTCCAGTGTGGGGACCTCCTCATGGGTATATGGCACCTGCACCTCCACCATATGA 644
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 ACCTCCTCCTGTGTGGGGACCTCCTCATGGATATATGGCACCTGCACCTCCACCATATGA 659
Query 645 TCCCTATGCAGGTTATCATGCTCCACCTGTACCAATGCCTGCGCCCCCACCTATAGCAGC 704
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 660 TCCCTATGCAGGTTATCATGCTCCCCCTGTACCAATGCCTACGCCCCCACCTATAGCAGC 719
Query 705 TCCAAGTTCATATGTGCCTGTCCAGAATATTAAGGATAATCCCCCTTGCAATACCCTATT 764
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TCCTAGTTCTTATGTGCCTGTCCAGAATATTAAGGATAATCCACCTTGCAATACCCTATT 779
Query 765 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGCGCGCA 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 TATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGTGCGCA 839
Query 825 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTATGCTTTATTGA 884
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 ACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTTTGCTTTATTGA 899
Query 885 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCC 959
Query 945 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAA 1019
Query 1005 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCAAATGGAGCCCAAGGAGCTCT 1064
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1020 GGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCTAATGGAGCCCAAGGAGCCCT 1079
Query 1065 GACATATCAGTAGGCCTTGTAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GACATATCAGTAGGCCTTGAAGGGGGACGTACTCTCTTCCTTATCTCCCAACAACTGCAC 1139
Query 1125 GAATAGGATGCATCTTGCAGGCAGTCCGCATTGCATCCATTTTCATTCTCAACATTTTTA 1184
||||| |||||||||| ||||||||| ||||| ||||||||| ||||||| |||||||||
Sbjct 1140 GAATACGATGCATCTTCCAGGCAGTCTGCATTTCATCCATTTCCATTCTCGACATTTTTA 1199
Query 1185 AGCATCAGCATTGCTTCTTTGTCATGTGTTGGATGCATATAGTGTGACCTCATCAACATA 1244
|||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 AGCATCAGCATTGCTT-T--GTCATGTGTTGGGTGCATATAGTGTGACCTCATCAACATA 1256
Query 1245 TAACAT-TT-CAGTTTCTATTAGCTTTACTACATGCATTCGCAGCGTGGTTTTTGATGAT 1302
|||||| || ||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1257 TAACATGTTTCAGTTTCTATTAGCTCTGCTACATGCATTCGCAGTGTGGTTTTTGATGAT 1316
Query 1303 TGTTTGAATTCTGTAGGAGTTTGGTTTGCCATTTGTTTATCTTATTGCGGCTT-AACACA 1361
|||||||||| | |||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1317 TGTTTGAATTATATAGGAGTTTGGTTTGCTATTTGTTTATCTTATTGCGGCTTTAATACA 1376
Query 1362 TCACTTGGTGGGACTCATTTTCGA-CATTCTGATTGATTCATCCTAATGAAACGCTT-GA 1419
|||||| |||||| |||||||| | ||||||||| ||||||||||||||||||| || |
Sbjct 1377 TCACTTTGTGGGATTCATTTTC-ATCATTCTGATCGATTCATCCTAATGAAACG-TTAGC 1434
Query 1420 TAT-AACATAACATAACATTACATTAGATCATAACATGATATTATCCAGAGGCCTTTCAT 1478
|| || | |||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1435 TAGGAAAA-AACATAACATTACATTAGATCATAACATGATAACATCCGGAGGCCTTCCAT 1493
Query 1479 CAACTTCACTTCACTGCATGGACATGGAATGTTGCTCTC-TGGATCGATTCATCCTAATG 1537
||||||| ||||||||||||||| |||||||||||||| || || |||||||||||| |
Sbjct 1494 CAACTTCGTTTCACTGCATGGACACGGAATGTTGCTCTCATG-ATTGATTCATCCTAACG 1552
Query 1538 AAAGTCCATTTGCTATGTTAGCTTGATATAACATTACATTAGATCATAACATGATAACAT 1597
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1553 AAACTCCATTTGCTATGTTAGCT-GATATACCATTACATTAGATCATAACATGATAACAT 1611
Query 1598 CCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGACATGGAATGTTACTCTCATGATC 1657
|||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1612 CCAGAGGGGTTTGATCAACTTCGTTTCACTGCATAGACATGGAATATTACTCTCATGATC 1671
Query 1658 TATCACATCGGTGTCATTCTTCAGCATTTCCCATGTCGATCATTCACTGTTCTTACTTAG 1717
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1672 TATCACATCGGTTTCATTCTTCAGCATTTCCCATGTCGATCATTCTCTGTTCTTACTTAG 1731
Query 1718 GCTGATGAACAAGCACATCCATTTTGTCAGTTGTTGAAGTTGACAGCTGATTTAACATTT 1777
|||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 1732 GCTGATGAACAAGCACATCCGTTTTGTCAG------AAGTTGACAGCTGATATAACATTT 1785
Query 1778 GAAGATAGGCACTCCATTACATTGTAGGTTTAT 1810
||||||||||| |||||||||||||||||||||
Sbjct 1786 GAAGATAGGCATTCCATTACATTGTAGGTTTAT 1818
Score = 137 bits (74), Expect = 3e-31
Identities = 120/141 (85%), Gaps = 7/141 (5%)
Strand=Plus/Plus
Query 1516 TCTGGATCGATTCATCCTAATGAAAGTCCATTTGCTATGTTAGCTTGATATAACATTACA 1575
||| ||||||||||||||||||||| | || |||| | | | |||||||||||
Sbjct 1404 TCT-GATCGATTCATCCTAATGAAA---CGTTAGCTA-G-GA-AAAAACATAACATTACA 1456
Query 1576 TTAGATCATAACATGATAACATCCAGAGGGCTTTGATCAACTTCGTTTCACTGCATGGAC 1635
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1457 TTAGATCATAACATGATAACATCCGGAGGCCTTCCATCAACTTCGTTTCACTGCATGGAC 1516
Query 1636 ATGGAATGTTACTCTCATGAT 1656
| |||||||| ||||||||||
Sbjct 1517 ACGGAATGTTGCTCTCATGAT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5