BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479642
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21220.1 | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, AT... 2015 0.0
AT1G51660.1 | Symbols: ATMKK4, MKK4, ATMEK4 | mitogen-activated... 833 0.0
> AT3G21220.1 | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5,
ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445757-7447351 FORWARD
LENGTH=1595
Length=1595
Score = 2015 bits (1091), Expect = 0.0
Identities = 1310/1409 (93%), Gaps = 42/1409 (3%)
Strand=Plus/Plus
Query 63 CTGGAAGAGAAAGAATCAACCTTGTGaaaacaaaaacaaaaaaCCTTTTGAGTCTCTCTC 122
|||||||| ||||||||||||||||| ||| ||||| |||||| ||||||| | || | |
Sbjct 93 CTGGAAGATAAAGAATCAACCTTGTG-AAA-AAAAA-AAAAAA-CTTTTGA-T-TC-C-C 144
Query 123 GATTCTTCTTCTAAAAGCCATGAAACCGATTCAATCTCCTCCTGGAGGAGTAGCTTCACC 182
||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 145 ---TCTTCTTCTAAAAGCCATGAAACCGATTCAATCTCCTTCT---GGAGTAGCTTCACC 198
Query 183 TACCAAGAACCGTTCACGCAAACGTCCTGACCTAAGCTTACCACTCCCACACCGTGACGT 242
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 199 TATGAAGAACCGTTTACGCAAACGTCCTGACCTAAGCTTACCACTCCCACACCGCGACGT 258
Query 243 CGctctcgccgtacctctccctctcccaccaccctcctcctcctcttccgctccGGCGTC 302
|||||||||||||||||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 259 CGCTCTCGCCGTACCTCTCCCTCTCCCACCTCCTTCTTCCTCTTCATCCGCTCCGGCGTC 318
Query 303 GTCATCTGCGATCTCAACCAACATCTCCGCCGCGAAAAGCTTATCGGAGCTAGAACGGGT 362
|| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 319 TTCCTCCGCGATCTCAACCAACATCTCCGCCGCTAAAAGCTTATCCGAGCTAGAACGAGT 378
Query 363 GAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACACTCCGACGTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACACTCCGACGTC 438
Query 423 ACGTCCTTTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAGAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACGTCCTTTCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGACGTCAGAT 498
Query 483 CTGTAGAGAGATCGAGATCTTACGAAGTGTTGATCATCCAAACGTTGTGAAATGTCACGA 542
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 499 CTGTAGAGAGATCGAGATCTTAAGAAGTGTTGATCATCCAAACGTTGTGAAATGTCACGA 558
Query 543 AATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGATCTCT 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCAAGGATCTCT 618
Query 603 TGAAGGAGCTCATGTATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATTCTTAG 662
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TGAAGGAGCTCATATATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTCAGATTCTTAG 678
Query 663 TGGTTTAGCTTATCTTCATCGCCGTCACATCGTTCACCGTGATATCAAACCTTCGAATCT 722
||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 679 TGGATTAGCTTATCTTCATCGTCGTCATATCGTTCATCGTGATATCAAACCTTCGAATCT 738
Query 723 TCTCATTAACTCAGCTAAGAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGATCTTGGC 782
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCTTATAAACTCAGCTAAAAATGTGAAAATTGCTGATTTTGGTGTGAGTAGGATCTTGGC 798
Query 783 TCAAACCATGGATCCTTGTAATTCATCTGTTGGAACTATTGCTTATATGAGTCCTGAGAG 842
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 799 ACAAACAATGGATCCTTGTAATTCATCTGTTGGTACTATTGCTTATATGAGTCCTGAGAG 858
Query 843 GATTAACACTGATTTGAATCATGGTCGTTACGATGGTTACGCTGGAGATGTTTGGAGCTT 902
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 859 GATTAATACTGATTTGAATCATGGTCGTTACGATGGTTATGCTGGAGATGTTTGGAGTTT 918
Query 903 AGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTAATGTGAGTAGACAAGG 962
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 919 AGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTGCTGTGAGTAGACAAGG 978
Query 963 TGATTGGGCTAGTCTAATGTGTGCCATTTGTATGTCTCAGCCACCGGAAGCTCCGG-TGA 1021
||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| | |
Sbjct 979 TGATTGGGCTAGTCTTATGTGTGCTATTTGTATGTCTCAGCCACCTGAAGCTCCGGCT-A 1037
Query 1022 CGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGCTTACAGAGTGATCCTCCTAAGA 1081
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1038 CGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGTTTACAGAGTGATCCTCCTAAGA 1097
Query 1082 GATGGTCAGCTCAACAGCTTTTGCAGCATCCTTTCATACTTAAAGCAACTGGAGGTCCTA 1141
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1098 GATGGTCAGCTCAACAGCTTTTGCAGCATCCTTTCATACTTAAAGCTACCGGTGGTCCTA 1157
Query 1142 ATCTCCGTCAAATGTTGCCGCCGCCTCGTCCTCTTCCTTCGGCTTCCTAGGGtttttacc 1201
|||||||||||||||||||||||||||||||||||||||| || || ||| |||| ||||
Sbjct 1158 ATCTCCGTCAAATGTTGCCGCCGCCTCGTCCTCTTCCTTCTGCCTCTTAGTGTTTCTACC 1217
Query 1202 attttcgtctttcttgttttccgatttttcgtattttttcctgacaatttttccacaagt 1261
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||| ||||
Sbjct 1218 ATTTTCGTCTTTCTTGTTTTTCAATTTTTCGTAGTTTTTCCTGACA-TTTTTCCATAAGT 1276
Query 1262 tttGCATACCCCAAGCAAAGATAATGA-AAGAGTAGAA---CAATGTGGTTTGTGATTGG 1317
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1277 TTTGCATACCCCAAGCAAAGATAATGAGAAGAGTAGAAGAACAATGTGGTTTGTGATTGG 1336
Query 1318 GGTATGATTTGTCAGGAAGAAACTCAGTTTGTGGTTAGGGTTTATTGAGTCTTT--CTTA 1375
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1337 GGTATGAGTCGTCAGGAAGAAACTCAGTTTGTGGTTAGGGTTTATTGAGTCTTTATCTTA 1396
Query 1376 TGTT--T---CTT--TT-G------GG-TAATGAAGAATGTTTTGCTACAAATGGAAAGT 1420
|| | | ||| || | || |||||||||||||||||||| |||||||||
Sbjct 1397 TGCTGCTAAGCTTGATTTGTCTTATGGGTAATGAAGAATGTTTTGCTAGAAATGGAAACA 1456
Query 1421 AAAA----GACAAGAAGAATTCTTATGGT 1445
|||| |||||||||||||||||||||
Sbjct 1457 AAAAAATAGACAAGAAGAATTCTTATGGT 1485
Score = 104 bits (56), Expect = 2e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 GAAGCTTCGTTCTCCTCTTGATTTGATCTCTTCGAAAAACGACGAATCAAACAAACCCTA 60
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAGCTTCATTCTCCTCTTGATTTGATCTCTTTGAAAAACGACGAATCAAACAAACCCTA 60
Query 61 GA 62
||
Sbjct 61 GA 62
> AT1G51660.1 | Symbols: ATMKK4, MKK4, ATMEK4 | mitogen-activated
protein kinase kinase 4 | chr1:19154323-19155947 FORWARD
LENGTH=1625
Length=1625
Score = 833 bits (451), Expect = 0.0
Identities = 676/782 (86%), Gaps = 25/782 (3%)
Strand=Plus/Plus
Query 360 GGTGAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACAC-TCCGA 418
||| ||||| |||||||||||||| || |||||||| |||||||| || ||| | |||||
Sbjct 496 GGT-AACCGTATCGGAAGCGGAGCAGGTGGAACGGTATACAAAGTGATTCAC-CGTCCGA 553
Query 419 CG-TCACGTCCT-T-TCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGAC 475
| || ||| || | | || || || ||||| ||||| |||||||| || || |||||||
Sbjct 554 -GTTCTCGT-CTATAT-GCACTTAAGGTGATATACGGTAACCACGAGGAGACTGTGAGAC 610
Query 476 GTCAGATCTGTAGAGAGATCGAGATCTTACGAAG-TGTTG-ATCATCCAAACGTTGTGAA 533
||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct 611 GTCAGATCTGTAGAGAGATCGAGATTTTACG-AGATG-TGAATCATCCAAACGTTGTGAA 668
Query 534 ATGTCACGAAATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCA 593
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 669 ATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATAA 728
Query 594 AGGATCTCTT-GAAGGAGCTCATGTATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTC 652
||| ||| || ||||| |||||||| ||| |||| || ||||||||||||| |||||||
Sbjct 729 AGGTTCT-TTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCTCGTC 787
Query 653 AGATTCTTAGTGGTTTAGCTTATCTTCATCGCCGTCACATCGTTCACCGTGATATCAAAC 712
||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 788 AGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATCAAAC 847
Query 713 CTTCGAATCTTCTCATTAACTCAGCTAAGAATGTGAAAATTGCTGATTTTGGTGTGAGTA 772
| ||||||||| | || ||||| ||||| || || || |||||||||||||| || ||||
Sbjct 848 CATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCTGATTTTGGAGTTAGTA 907
Query 773 GGATCTTGGCTCAAACCATGGATCCTTGTAATTCATCTGTTGGAACTATTGCTTATATGA 832
||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 908 GGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTATATGA 967
Query 833 GTCCTGAGAGGATTAACACTGATTTGAATCATGGTC-GTTACGATGGTTACGCTGGAGAT 891
||||||||||||||||||||||||||||||| || || | |||||||| |||||||||
Sbjct 968 GTCCTGAGAGGATTAACACTGATTTGAATCAGGGAAAGT-ATGATGGTTATGCTGGAGAT 1026
Query 892 GTTTGGAGCTTAGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTAATGTG 951
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1027 ATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCTGTG 1086
Query 952 AGTAGACAAGGTGATTGGGCTAGTCTAATGTGTGCCATTTGTATGTCTCAGCCACCGGAA 1011
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1087 AGTAGACAAGGTGATTGGGCTAGTCTTATGTGTGCCATTTGTATGTCTCAGCCTCCAGAA 1146
Query 1012 GCTCCGGTGACGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGCTTACAGAGTGAT 1071
||||| | ||| ||||| | ||||||||| || ||| | || |||||||| ||||| ||
Sbjct 1147 GCTCCAGCGACTGCGTCGCCGGAGTTTCGGCATTTTATCTCGTGTTGCTTGCAGAGAGAA 1206
Query 1072 CCTCCTAAGAG-ATG-GTCAGCTCAA-CAGCTTTTGCAGCATCCTTTCATACTTAA-AGC 1127
|| || || | | || ||| | ||||| |||||||||||||||||| |||| |||
Sbjct 1207 CCGGGGAAAAGGAGGAGT--GCT-ATGCAGCTATTGCAGCATCCTTTCATA-TTAAGAGC 1262
Query 1128 AA 1129
||
Sbjct 1263 AA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5