BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479647
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 | c... 2615 0.0
AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protea... 1465 0.0
> AT3G21280.1 | Symbols: UBP7 | ubiquitin-specific protease 7 |
chr3:7477987-7482070 REVERSE LENGTH=1811
Length=1811
Score = 2615 bits (1416), Expect = 0.0
Identities = 1668/1786 (93%), Gaps = 31/1786 (2%)
Strand=Plus/Plus
Query 22 AAACCCGACCCGACTAAACCCGGCCCGACCCACCCGGTTCGGGTATTGGCGTATTTATTA 81
||||||||||||| | ||||||| ||||||||||||||||| || |||| || || ||
Sbjct 43 AAACCCGACCCGAATCAACCCGGATCGACCCACCCGGTTCGGATACTGGC--ATATA-TA 99
Query 82 GAGACGAATTCAGAAGAAGAAGGCAAG---TTTTTATTT-ATTTCGTTTGCCTTGTCTTC 137
|||||||| |||||||||||||||| ||||| ||| || | | |||||||| ||||
Sbjct 100 GAGACGAAGAAAGAAGAAGAAGGCAAGTTTTTTTTTTTTGATATAGCTTGCCTTGGCTTC 159
Query 138 AAGAAATCAATCAATCTCGTTTCTCTTC-GTCATCGAACAATGTTAACAGTGAGCGTGAA 196
|||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 160 AAGAAAGAAATCAATCTCGTTTCTCTTCAG-CATCAAACAATGTTAACAGTGAGCGTGAA 218
Query 197 GTGGCAAAAGAAGGTGTTTGAGAGTATGGAGATTGATACTCTCCAGCCTCCTTATGTATT 256
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||
Sbjct 219 GTGGCAAAAGAAGGTGTTTGAGAGTATCGAGATTGATACTAGCCAGCCTCCTTTTGTTTT 278
Query 257 CAAGGCTCAGTTGTATGATTTGAGTGGAGTACCGCCTGAGCGGCAAAAGATCATGGTCAA 316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 279 CAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAA 338
Query 317 AGGTGGACTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTCAAAAATGGTCAAAA 376
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 339 AGGTGGCCTTTTGAAGGATGATGCAGATTGGTCTACGTTGGGACTGAAAAATGGTCAAAA 398
Query 377 ATTGATGATGATGGGAACTGCAGATGAAATAGTCAAGGCTCCAGAGAAGGGTCCTGTTTT 436
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 399 ATTGATGATGATGGGAACTGCAGATGAAATAGTGAAGGCTCCAGAGAAGGGTCCTGTTTT 458
Query 437 TATGGAGGATCTTCCTGAGGAGGAACAAGCCGCTAATCTGGGTTACAGTGCTGGCCTAGT 496
|||||||||||||||||| || | || || ||||||||||| |||||||||||||||||
Sbjct 459 TATGGAGGATCTTCCTGAAGAACAGCAGGCTGCTAATCTGGGCTACAGTGCTGGCCTAGT 518
Query 497 CAATCTTGGAAACACCTGCTACATGAACTCAACGATGCAGTGTTTAAAATCTGTCCCAGA 556
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 519 CAATCTTGGAAACACCTGTTACATGAACTCAACGATGCAGTGTTTAATATCTGTCCCAGA 578
Query 557 GTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTTGATCAGACTTC 616
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 579 GTTGAAATCTGAATTATCCAATTACCAATCTGCTCGAACCAAGGATGTGGATCAGACTTC 638
Query 617 TCACATGCTCACAGTTGCAACACGTGAGTTATTTAGAGAGCTTGATAAAAGTGTCAAGGC 676
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 639 TCACATGCTCACTGTTGCAACACGTGAGTTATTTAGTGAGCTTGATAAAAGTGTCAAGGC 698
Query 677 TGTTGCGCCTATGCCATTCTGGATGGTGTTACaaaaaaaaTATCCTCAGTTTGCTCAGTT 736
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGTTGCGCCTATGCCGTTCTGGATGGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTT 758
Query 737 GCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACAC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GCATAACGGAAATCACATGCAACAGGATGCTGAAGAATGTTGGACACAAATGTTGTACAC 818
Query 797 TCTTTCCCAGTCCCTAAAACCGCCATCGCCTACCGAAGATCCTGATGCTGTGAAGGCTCT 856
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 819 TCTTTCCCAGTCCCTAAAACTGCCATCGCCTAGTGAAGATCCTGATGCTGTGAAGGCTCT 878
Query 857 TTTTGGTCTCAACCTTCGT-AGCAGGTTGCATTGCCAAGAAAGTAGTGAAGAAAGCTCGG 915
||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| |
Sbjct 879 TTTTGGTCTCAACCTTC-TAAACAGGTTGCATTGCCAAGAAAGTAGCGAAGAAAGCTCAG 937
Query 916 AGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATG 997
Query 976 AAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTGCTCTGGGTCGTA 1035
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 AAGGATTAAAACATGGACTGAAAGGAGAACTTGAAAAAACATCTCCTTCTCTGGGTCGTA 1057
Query 1036 CAGCGGTTTACATTAAGGAGTCTCTTATAGATTCGTTGCCAAGGTACTTGACTGTTCAGT 1095
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1058 CAGCGGTTTACGTAAAGGAGTCTCTTATAGATTCATTGCCAAGGTACTTGACTGTTCAGT 1117
Query 1096 TTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGG 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TTGTGAGATTCTTCTGGAAACGGGAGAGTAATCAGAAAGCAAAAATTCTCCGGAAAGTGG 1177
Query 1156 ATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGG 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATTATCCGTTGGAGTTGGATATATATGACCTTTGTTCTGAGGATCTTCGAAAGAAACTGG 1237
Query 1216 AAGCTCCTCGCCAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTG 1275
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AAGCTCCTCGACAGAAACTGAGAGATATTGAAGGTCAAAAGCTTGGTCTGCAAGCCAGTG 1297
Query 1276 CAAAGAGCAGCTCAAAGGGCGATGATGTGAAAATGACTGATGCTGAGGAATCATCAAACG 1335
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1298 CAAAGAGCAGCTCAAAGGGTGATGATGTGAAAATGACTGATGCTGAGGGATCATCAAACC 1357
Query 1336 GAAGTGGTGAGTCATCCTCCGGTGACCAACATGGA-GGTGCTTCGTCTCACATGACCGGA 1394
|||||| || ||||| | ||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 1358 AAAGTGGCGAATCATCAACTGGTGACCAACA-GGAAGGTGCTTCGCCTCACATGACCGGA 1416
Query 1395 ATTTATGACCTGGTCTCAGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTAT 1454
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ATTTATGACCTGGTATCGGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTAT 1476
Query 1455 GTTTCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCTAACACGAGC 1514
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1477 GTTGCATGGGTCAAGCAAGAGAGTGGTAAGTGGGTTCAATACGACGATGCCAACACTAGT 1536
Query 1515 CTTCAACGGGAAGAGGATATCACTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATAC 1574
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1537 CTTCAACGGGGAGAAGATATCATTAAACTCTCTGGAGGAGGTGATTGGCATATGGCATAC 1596
Query 1575 ATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATC---TCT-TC-TCTTTTCATTAT 1629
|||||||||||||||||||||||||||||||||||||| ||| || | |||| ||| |
Sbjct 1597 ATCGTAATGTACAAGGCCCGTCTCATCTCCATGTAATCGAATCTCTCCTTTTTT-ATTTT 1655
Query 1630 CTCAGTTCTTGAAACATTTAGATCGCTTAAGCttttttttGTATAGACCATCTTCATGCT 1689
||||||||||||||||||||||||| |||| ||||| | || | | | | ||||||
Sbjct 1656 CTCAGTTCTTGAAACATTTAGATCGTTTAATCTTTTCTCAGT-T---C--T-T-CATGCT 1707
Query 1690 CCTCTTTGTAGAAATTTC-ACATTATTTTTTGTTGTCGTCATTAAAATGTTATAAACCAG 1748
||||||| ||||| |||| | ||||||||||||||| ||||||||||||||||||| |||
Sbjct 1708 CCTCTTTATAGAA-TTTCCATATTATTTTTTGTTGTTGTCATTAAAATGTTATAAATCAG 1766
Query 1749 AAAACTA-AAATAAAAGTTCTGtttttttttAGAGGTCCCAATCTG 1793
||||||| ||| |||| ||| ||||| ||||||||||||||||
Sbjct 1767 AAAACTATAAAGAAAAAAG-TGTGTTTTTGTAGAGGTCCCAATCTG 1811
> AT1G51710.1 | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease
6 | chr1:19175642-19179967 REVERSE LENGTH=1685
Length=1685
Score = 1465 bits (793), Expect = 0.0
Identities = 1282/1511 (85%), Gaps = 62/1511 (4%)
Strand=Plus/Plus
Query 183 ACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGA-GAGTATGGAGATTGA---TACTCT 238
||||| |||||||||||||||||||| ||||| || | |||| |||||||| || |||
Sbjct 80 ACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTTGGATG-GTATCGAGATTGACGTTAGTCT 138
Query 239 CCAGCCTCCTTATGTATTCAAGGCTCAGTTGTATGATTTGAGTGGAGTACCGCCTGAGCG 298
|||||||||||| ||||||||||||||||||||||||| |||||| || || || ||
Sbjct 139 ---GCCTCCTTATGTTTTCAAGGCTCAGTTGTATGATTTGACTGGAGTTCCACCAGAACG 195
Query 299 GCAAAAGATCATGGTCAAAGGTGGACTTTTGAAGGATGATGCAGATTGGTCTACGT-TGG 357
||||||||||||||||||||||| || || |||||||||| ||||||| || | | | |
Sbjct 196 CCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGGCTGC-TATTG 254
Query 358 GACTCAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTCAAGGCTC 417
| | ||| ||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 255 GTGTGAAAGATGGTCAAAAATTGATGATGATGGGAACTGCTGATGAGATAGTGAAAGCTC 314
Query 418 CAGAGAAGGGTCC--TGTTTTTATGGAGGATCTTCCTGAGGAGGAACAAGCCGCTAATCT 475
| ||||| || || ||||||| |||||||| ||||| || | | |||| |||||||
Sbjct 315 CTGAGAA-GG-CCATTGTTTTTGCAGAGGATCTACCTGAAGAAGCGCTAGCCACTAATCT 372
Query 476 GGGTTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGCTACATGAACTCAACGATGCA 535
|||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||| ||||
Sbjct 373 GGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCACGGTGCA 432
Query 536 GTGTTTAAAATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTAC-CA-AT-CTGCTCG 592
||| |||||||||||||||||||||||||||| ||||||||||||| || | |||| ||
Sbjct 433 GTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCCAATTACTCACTTGCTGCCCG 492
Query 593 AACCAAGGATGTTGATCAGACTTCTCACATGCTCACAGTTGCAACACGTGAGTTATTTAG 652
|| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 493 AAGCAATGATGTTGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGTTATTTGG 552
Query 653 AGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGC-CA-TTCTGGATGGTGTTACaa 710
|||||||||| ||||||||| |||||| ||||| | | || ||||||||||| |||| |
Sbjct 553 TGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCT-T-CACAGTTCTGGATGGTATTACGA 610
Query 711 aaaaaaTATCCTCAGTTT-GCTCAGTTGCATAACGGAAAT-CACATGCAACAGGATGCTG 768
||||| |||||||||||| | ||||||||| || || ||| |||||||| ||||||||||
Sbjct 611 AAAAAGTATCCTCAGTTTAG-TCAGTTGCAGAATGG-AATGCACATGCAGCAGGATGCTG 668
Query 769 AAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACCGCCATC-GCCT 827
||||||||||||||||| |||| ||||| ||||| |||||||||||| | ||| | ||
Sbjct 669 AAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCCTAAAAGCACCAACTTCC- 727
Query 828 ACCGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTC-GTAGCAGGTTGCA 886
| ||||| | ||||||||||||| ||||| |||||| |||| || | | |||||||||||
Sbjct 728 AGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATCTCCAG-AGCAGGTTGCA 786
Query 887 TTGCCAAGAAAGTAGTGAAGAAAGCTCGGAGACAGAATCTGTCTTTTCTCTGAAATGTCA 946
||| ||||||||| | ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct 787 TTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCA 846
Query 947 CATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACT 1006
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 TATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAACT 906
Query 1007 TGAAAAAACATCTCCTGCTCTGGGTCGTACAGCGGTTTACATTAAGGAGTCTCTTATAGA 1066
||||||||||||||||||||| || ||||| || | ||| | |||||||| ||||||||
Sbjct 907 TGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCAAGGAGTCACTTATAGA 966
Query 1067 TTCGTTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAA 1126
||| |||||||||||||||||||||||||| ||| | || ||||||||| ||||||||||
Sbjct 967 TTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCTGGAAAAGGGAGAGTAA 1026
Query 1127 TCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCT 1186
|||||||||||| || ||| ||||||||||||| ||| ||| ||||||||||| ||||||
Sbjct 1027 TCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGTTGGATATATTTGACCT 1086
Query 1187 TTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGCCAGAAACTGAGAGAT-ATTG 1245
||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
Sbjct 1087 TTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGAGGAG-G 1145
Query 1246 AAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGC-GATGATGTG 1304
||||| ||||||||||||| ||| | ||||| ||||| ||||||||| | | |||||||
Sbjct 1146 AAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAG-TGATGTG 1204
Query 1305 AAAATGACTGATGCTGAGGAATCAT-CAAACGGAAGTGGTGAGTCATCCTCCGGTGA-CC 1362
|||||||||||||| |||| || | |||| |||||||| || |||||| | | | | ||
Sbjct 1205 AAAATGACTGATGCAGAGGCGTC-TGCAAATGGAAGTGGAGAATCATCCACAG-TAAACC 1262
Query 1363 AACATGGA-GGTGCTTCGTCT----------C--ACATGACCGGAATTTATGACCTGGTC 1409
||| ||| ||| |||| ||| | ||||||| ||||| |||||| |||||
Sbjct 1263 CACA-GGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTC 1321
Query 1410 TCAGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTTCATGGGTCAAG 1469
| |||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||||
Sbjct 1322 GCTGTGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAG 1381
Query 1470 CAAGAGAGTGGTAAGTGGGTTCAATACGACGATG-CTAACACGAGCCTTCAACGGGAAGA 1528
||||||||||| || ||| ||||||| || |||| | ||| ||||| | ||||| |||||
Sbjct 1382 CAAGAGAGTGGCAAATGGATTCAATATGATGATGAC-AACCCGAGCATGCAACGCGAAGA 1440
Query 1529 GGATATCACTAAA-CTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACA 1587
|| ||||| ||| || |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1441 AGACATCAC-AAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACA 1499
Query 1588 AGGCCCGTCT-CATCTCCATGTAATCTCT-TCT--CTTTTCATTA-TCTCAGTTCTTGAA 1642
| ||||| || | |||||||||||||||| ||| ||||| || | | | ||||||||||
Sbjct 1500 AAGCCCG-CTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGAATTT-AGTTCTTGAA 1557
Query 1643 ACATTTAGATC 1653
||||| |||||
Sbjct 1558 ACATTCAGATC 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88704363015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5