BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479651
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21310.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2198 0.0
AT1G51770.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 863 0.0
> AT3G21310.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:7497290-7499152
FORWARD LENGTH=1584
Length=1584
Score = 2198 bits (1190), Expect = 0.0
Identities = 1367/1453 (94%), Gaps = 9/1453 (1%)
Strand=Plus/Plus
Query 1 ACCAAAATCAGATTAGAGTTACAGAGACATCCCTCGAATACGATCATCAGACAAGACTTA 60
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ACCAAAATCAGATTAGAGTTTCAGAGACATCTCTCGAATACGATCATCAGACAAGACTTA 60
Query 61 AGCTCCATTTACACGTCTCCCTGCTCACGAGAGACAAATCATGAACGAATCCGACAGCTG 120
| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ACCTCCATTTGCACGTCTTCCTGCTCACGACAGACAAATCATGAACGAATCCGACAGCTG 120
Query 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACC-ttttttttGGCAGGA 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 121 AACGAATTGCGTGTCTGAGAAGATCCAAATCCTAATTTTCTACCTTTTTTTTTTG--GGA 178
Query 180 GCT-AGATTAGAATTTGGAACTTCTCGTACGTTTTCGCTTGCCTACGTTTCCGGACAAAA 238
|| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ACTAAGGTTAGAATTTGGAGCTTCTCGTACGTTTTTGCTTGCCTACGTTTCCGGACAAAA 238
Query 239 CCCTATTTGCATATTAACAGGATTGGTTCTGTTCATCAAGA-ACTTGAAG-CTGATGGGG 296
|||||||||||||| ||||| | ||||||||||||||||| || ||||| |||||||||
Sbjct 239 CCCTATTTGCATATAAACAGAACAGGTTCTGTTCATCAAGACAC-TGAAGCCTGATGGGG 297
Query 297 ATGGAGGAAGGGATTAAGGATAATGCTGCATCAGCTCCCAATTCAAGATATACAAACCAA 356
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 ATGGAGGAAGGGATTAAAGATAATGCTGCATCAGCTCCCAATTCAAGACCTACAAACCAA 357
Query 357 TTTAAAGCTCTTTTACCGATGCGGGTGCTTCAGGTTTTCTTGTTGTTCTTTGTTTTGGTT 416
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 CTTAAAGCTCTTTTACCGATGCGGGTGCTTCAAGTTTTCTTGTTGTTCTTTGTTTTGGTT 417
Query 417 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAATATTCAAACTTTGGCT 476
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 418 CTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTTAAAGATTCAAACTTTAGCT 477
Query 477 CCATCCACATTGATCTCTCCCTATGATGAGAGAATTACATTAGAGAGCTTTATCAAGCCT 536
||||| |||||||||||| | ||||||||||||||||| ||||||||| |||||||||||
Sbjct 478 CCATCGACATTGATCTCTACTTATGATGAGAGAATTACGTTAGAGAGCCTTATCAAGCCT 537
Query 537 CCATCGAGTGTTTGGCACTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 596
|||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCATTGAATGGTTGGCATTCCATGAATGACAGTGAGCTTCTTTGGCGTGCTTCGATGGAG 597
Query 597 CCACGGATACTTGAATATCCGTATAAAAGGGTTCCTAAAATGGCATTCATGTTTCTCACC 656
|| ||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 598 CCTCGGATACTTGACTATCCATTTAAAAGAGTTCCTAAAATGGCATTCATGTTTCTCACC 657
Query 657 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAACGGGCATGAGGGCTTT 716
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 AAAGGACCTTTGCCATTTGCTCCACTTTGGGAAAGGTTTTTCAAAGGGCATGAGGGCTTT 717
Query 717 TACTCAATCTATGTTCATGCGTTGCCAGATTATAGATCAGATTTCCCAAGCTCATCTGTG 776
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 718 TACTCAATCTATGTTCATACTTTGCCAAATTATAGATCAGATTTCCCAAGCTCATCTGTG 777
Query 777 TTTTATAGAAGACAGATCCCAAGTCAGCCA-GTGGCTTGGGGAGAGATGAGTATGTGTGA 835
||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 778 TTTTACAGAAGACAGATCCCAAGTCAGC-ATGTAGCTTGGGGAGAGATGAGTATGTGTGA 836
Query 836 TGCTGAAAGGAGGCTTTTGGCTAATGCCTTGCTCGATATCTCTAACGAATGGTTTGTTTT 895
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 837 TGCTGAAAGGAGGCTTTTGGCTAACGCGTTGCTCGATATCTCTAACGAATGGTTTGTTTT 896
Query 896 GCTATCTGAAGCGTGCATTCCTATTCGCGGTTTCAACTTTGTCTACCATTATGTCTCTAG 955
|||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 897 ACTATCTGAAGCGTGTATTCCTCTTCGCGGTTTCAACTTTGTCTACCGTTATGTCTCTAG 956
Query 956 ATCAAGATATAGTTTCATGGGTTCTGTTGATGAGGACGGTCCTTACGGGAGAGGCAGATA 1015
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 957 ATCAAGATATAGTTTCATGGGTTCTGTTGACGAGGACGGGCCTTACGGGAGAGGCAGATA 1016
Query 1016 CAGTTATGCAATGGGGCCAGAAGTCAGTCTAAGCGAGTGGAGAAAAGGGTCTCAGTGGTT 1075
|| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1017 TAGCTATGCAATGGGACCAGAAGTAAGTCTAAACGAGTGGAGAAAAGGGTCTCAGTGGTT 1076
Query 1076 TGAAATTAACAGAGCACTTGCTGTTGAAATTGTTGAAGACATGGTTTACTATAAAAAATT 1135
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1077 TGAAATAAACAGAGCACTTGCTGTTGATATTGTTGAAGACATGGTTTACTATAACAAATT 1136
Query 1136 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCCACAATGCTCTC 1195
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 CAAAGAGTTTTGTAGACCTCCTTGTTATGTAGATGAACATTACTTCCCAACAATGCTCTC 1196
Query 1196 TATTGGATATTCGGATTTGCTCGCTAATCGGACATTGACATGGACAGATTGGTCAAGAGG 1255
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1197 TATTGGATATCCGGATTTTCTCGCTAATCGGACATTGACTTGGACAGATTGGTCAAGGGG 1256
Query 1256 TGGTGCTCATCCAGCTACTTTTGGCAAAACTGATATAACAGAGAGGTTCCTCAAGAAGCT 1315
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 1257 TGGTGCTCATCCAGCTACTTTTGGCAAGGCTGATATAACAGAGAAGTTCATCAAGAAGCT 1316
Query 1316 TTCACGAGGTCAAGCTTGCTTCTACAATGATAAGCCATCTCAAGTGTGTTATCTTTTTGC 1375
||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1317 GTCAAGAGGTAAAGCTTGCTTCTACAATGATCAGCCATCTCAAGTTTGTTATCTTTTTGC 1376
Query 1376 AAGAAAGTTTTCGCCAAGCGCATTGGAGCCTTTACTCAAACTTGCACCAAAGGTTCTTGG 1435
|||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1377 AAGAAAGTTTGCTCCAAGCGCATTGAAGCCTTTACTTAAACTTGCACCAAAGGTTCTTGG 1436
Query 1436 GTTCTAACTAATG 1448
||||||| |||||
Sbjct 1437 GTTCTAATTAATG 1449
Score = 111 bits (60), Expect = 2e-23
Identities = 69/73 (95%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 1474 CTTCGTATAGCATGGACACAACT--GATCCTTACTGTCTCCTTCCACATTTATAATATAG 1531
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1512 CTTCGTATAGCATGGACACAACTCTGATCCTTATTGTCTCCTTCCACATTGATAATATAG 1571
Query 1532 ATACTTCAATGGC 1544
|||||||||||||
Sbjct 1572 ATACTTCAATGGC 1584
> AT1G51770.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:19201789-19203224
FORWARD LENGTH=1351
Length=1351
Score = 863 bits (467), Expect = 0.0
Identities = 952/1181 (81%), Gaps = 54/1181 (5%)
Strand=Plus/Plus
Query 291 ATGGGGATGGAGGAA-GGGATTAAGGATAATGCTGCATCAGCTCCCAATTCAAGATAT-A 348
|||| |||||||||| | | |||| || |||| | ||||| | || || || ||| | |
Sbjct 146 ATGGAGATGGAGGAATGTG-TTAAAGAAAATGGTTCATCAACACCTAAATCTAGA-GTCA 203
Query 349 CAAACCAATTTAAAGCTCTTTTACCGATGCGGGTGCTTCAGGTTTTCTTGTTG-TTCTTT 407
||||||||| || |||||| |||||| |||| |||||||| || | || ||| ||| ||
Sbjct 204 CAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTGCTTCAGATTCTGTTATTGTTTC-TT 262
Query 408 GTTTTGGTTCTTGGAATCTCAGTCATTAGTATGCACATGATCAAGTACTT-AA-A-T--A 462
|||||| |||||| ||||| || ||||||| ||||||||||||| || || | | |
Sbjct 263 GTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGATCAAGTTTTTGAAGATTCAA 322
Query 463 --TTCA-A-ACTTTGGCTCC-ATCCACATTGATCTCT-C-CCT-ATGATGAGAGAATTAC 514
|| | | || ||||||| || || ||| ||||| | | || ||||||| ||||
Sbjct 323 CGTTTAGATCCTGTGGCTCCAAT-TACTTTGCTCTCTACGTATAATCATGAGAGTGTTAC 381
Query 515 ATTAGAGAGCTTTATCAAG-CCTCCATCGAGTGTTTGGCACTCCATGAATGACAGTGAGC 573
||||| |||||||| || ||||| || | |||||||||| | |||||||| |||||
Sbjct 382 TTTAGATAGCTTTAT-TAGACCTCCTTCCAATGTTTGGCACACAATGAATGATAGTGA-A 439
Query 574 TT-CTTTGGCGTGCTTCGATGGAGCCACGGATACTTGAATATCCGTATAAAAGGGTTCCT 632
|| |||||||||||||| || ||||| | | | || ||||||| || | | || |||
Sbjct 440 TTGCTTTGGCGTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTGTCCCT 499
Query 633 AAAATGGCATTCATGTTTCTCACCAAAGGACCTTTGCCATTTGCTCCACTTTGGGA-AAG 691
||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 500 AAATTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAA- 558
Query 692 GTT-TTTCAACGGGCATGAGGGCT-TTTACTCAATCTATGTTCATGCGTTGCC-AGATTA 748
||| | | || || |||||||| | |||| || |||||||||||| ||||||| || |||
Sbjct 559 GTTCTGT-AAAGGACATGAGGG-TCTTTATTCTATCTATGTTCATTCGTTGCCTAG-TTA 615
Query 749 TAGATCAGATTTCCCAAGCTCATCTGTGTTTTATAGAAGACAGATCCCAAGTCAGCCAGT 808
| ||| ||||| | || || ||||||||||| |||||| | ||||| |||||| | ||
Sbjct 616 CAAATCGGATTTTTCGAGGTCGTCTGTGTTTTACAGAAGATATATCCCTAGTCAGGCTGT 675
Query 809 GGCTTGGGGAGAGATGAGTATGTGTGATGCTGAAAGGAGGCTTTTGGCTAATGCCTTGCT 868
||| |||||||||||||||||| |||| || || |||||||||||||||||||| |||||
Sbjct 676 GGCATGGGGAGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGCGTTGCT 735
Query 869 CGATATCTCTAACGAATGGTTTGTTTTGCTATCTGAAGCGTGCATTCCTATTCGCGGTTT 928
||||||||||| |||||||||||| |||| |||||| | ||||||||| | || |||||
Sbjct 736 TGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGTTT 795
Query 929 CAACTTTGTCTACCA-TTATGTCTCTAG-ATCAAGATATAGTTTCATGGGTTCTGTTGAT 986
|| |||| |||| | |||||||||| | ||||||||||||||| |||||| ||| ||||
Sbjct 796 CAGCTTTATCTA-TAGTTATGTCTCT-GAATCAAGATATAGTTTTATGGGTGCTGCTGAT 853
Query 987 GAGGACGGTCCTTACGGGAGAGGCAGATACA-GTTATGCAATGGGGCCAGAAG-TCAGTC 1044
||||| || ||| | || ||||||||||||| | | | ||||| || | || ||| |
Sbjct 854 GAGGAAGGACCTGATGGAAGAGGCAGATACAGGACA-GAAATGGAACCTG-AGATCACAC 911
Query 1045 TAAGCGAGTGGAGAAAAGGGTCTCAGTGGTTTGAAATTAACAGAGCA-CTTGCTGTTGAA 1103
||||| ||||| ||||||||||||||||||||||||||||| | | | || ||||||||
Sbjct 912 TAAGCCAGTGGCGAAAAGGGTCTCAGTGGTTTGAAATTAACCG-GAAACTCGCTGTTGAG 970
Query 1104 ATTGTTGAAGACA-TGGTTTACTATAAAAAATTCAAAGAGTTTTGTAGACCTCCTTGTTA 1162
|||||| |||||| | || ||||| |||||||||||||||||||||||||| || ||
Sbjct 971 ATTGTTCAAGACACTACTT-ACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGCTA 1029
Query 1163 TGTAGATGAACATTACTTCCCCACAATGCTCTCTATTGGAT-ATTCGGATTT-GCTCGCT 1220
||||||||||||||||||||| |||||| | ||||| | | || ||| ||| ||| |||
Sbjct 1030 TGTAGATGAACATTACTTCCCAACAATGTTGTCTAT-GAAACAT-CGGGTTTTGCTTGCT 1087
Query 1221 AATCGGACATTGACATGGACAGATTGGTCAAGAGGTGGTGCTCATCCAGCTACTTTTGGC 1280
||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1088 AATAGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCATCCAGCTACTTTTGGT 1147
Query 1281 AAAACTGATATAACAGAGAGGTTCCTCAAGAAGCTTTCACGAGGTCAAG-CTTGCTTCTA 1339
|| ||||| |||| || || || |||||||||||| || ||| ||| ||||| ||||
Sbjct 1148 AAGGCTGATGTAACGGAAAGTTTTCTCAAGAAGCTTACAGGAGC-CAAATCTTGCCTCTA 1206
Query 1340 CAATGATAAGCCA-TCTCAAGTGTGTTATCTTTTTGCAAGAAAGTTTTCGCCAAGCGCAT 1398
||||||| | | | |||||| | |||||||| ||||| ||||||||| | ||||||||||
Sbjct 1207 CAATGATCATC-AGTCTCAAATCTGTTATCTCTTTGCCAGAAAGTTTGCTCCAAGCGCAT 1265
Query 1399 TGGAGCCTTTACT-CAAACTTGCACCAAAGGTTCTTGGGTT 1438
||||||||||||| ||| |||||||| ||| |||||| |||
Sbjct 1266 TGGAGCCTTTACTGCAA-CTTGCACCCAAGATTCTTGAGTT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5