BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479653
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2639 0.0
> AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507240-7509175 FORWARD LENGTH=1803
Length=1803
Score = 2639 bits (1429), Expect = 0.0
Identities = 1687/1804 (94%), Gaps = 47/1804 (3%)
Strand=Plus/Plus
Query 2 TGTATAGGGCTTTCAAGTCTTTTCTTACAGAAACCATCTATAACTCTAGC--AGAGCTCA 59
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 18 TGTATAGGGCTTTCAAGTCTTTTCTTACAGAAACTATCTATAACTCTAGCAGAGAGCTCA 77
Query 60 TTATAGAACAGAACAGAAACAGA-------AA--C-AGAG--C-TTTCTAATTCTACA-G 105
||||||||||||||||||||||| || | | || | ||| || ||
Sbjct 78 TTATAGAACAGAACAGAAACAGAGCTTTCTAAGTCTACAGCACAGAAATAAACCT-CATT 136
Query 106 CACAGACTGttttactttctttcctttttgagcatttcttctttctgttttttttcctct 165
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 137 TACAGACTGTTTTACTTTCTTTCCTTTTTGAGCATTTCTTCTTTCTG-TTTCTTTCCTCT 195
Query 166 gttttctctttctttccc-ttttgggtttccatctcttt---a-ag--g---catttctc 215
|||||||||||||||||| |||||||| | ||||||||| | || | | ||||||
Sbjct 196 GTTTTCTCTTTCTTTCCCTTTTTGGGTGT-CATCTCTTTAAGACAGAAGAAACGTTTCTC 254
Query 216 AGAGTTTCCTGTGAACTCATCTGTTTGTTCTCTTCTTCCGGTTTCACTTTTTCATGTCCT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AGAGTTTCCTGTGAACTCATCTGTTTGTTCTCTTCTTCCGGTTTCACTTTTTCATGTCCT 314
Query 276 GCCGTTATTACAACAAGGATTGTGTTTGATCCGATGGAAGGATTGGAATCTGTGTACGCT 335
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GCCGTTATTACAACGAGGATTGTGTTTGATCCGATGGAAGGATTGGAATCTGTGTACGCT 374
Query 336 CAAGCTATGTATGGAATGACCCGAGAAAGCAAAATCATGGAGCATCATCAAGGATCAGAT 395
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 375 CAAGCTATGTATGGAATGACACGAGAGAGCAAAATCATGGAG---CATCAAGGATCAGAT 431
Query 396 TTGATTTGGGGAGGAAATGAGCTAATGGCTCGAGAACTCTGTTCTTCTTCTTCTTTTCAC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 432 TTGATTTGGGGAGGAAATGAGCTAATGGCTCGAGAACTCTGTTCTTCTTCTTCTTATCAC 491
Query 456 CACCAACTCATTAATCCGAATCTTAGCAGCTGTTTCATGTCTGATCTTGGAGTCATAGGT 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 492 CACCAACTCATTAATCCGAATCTTAGCAGCTGTTTCATGTCTGATCTTGGAGTCTTAGGT 551
Query 516 GAGATTCAACAGCAGCAACATGTTGGAAACAGAGCTAGTTCGATAGATCCATCATCACTC 575
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 552 GAGATTCAACAGCAGCAACATGTTGGCAACAGAGCTAGCTCGATAGATCCATCATCACTC 611
Query 576 GATTGTTTGTTATCGGCGACGTCGAACAGCAACAACACTTCGACGGAAGACGATGAAGGC 635
|||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 612 GATTGTTTGTTATCTGCGACGTCGAATAGCAACAACACCTCGACGGAGGACGATGAAGGA 671
Query 636 ATTTCTGTGCTTTTCTCAGATTGTCAGACTCTTTGGAGCTTTGGTGGGGTCTCATCTGCA 695
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 672 ATATCTGTGCTTTTCTCAGATTGTCAGACTCTTTGGAGCTTTGGTGGAGTCTCATCTGCA 731
Query 696 GAGTCTGAGAACAGAGAGGTCACTAATGAGACGACAACAACGATAAAGCCTAAGTCTTTG 755
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 732 GAGTCTGAGAACAGAGAGATCACTACTGAGACGACAACAACGATAAAGCCTAAGCCTTTG 791
Query 756 AAGAGAAACAGAGGAGGAGATGGAGGAACTACTGAGACGACAACAACCACAACAACAAAG 815
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 792 AAGAGAAACAGAGGAGGAGATGGAGGAACTACTGAGACTACAAC-A--ACAACAACAAAA 848
Query 816 CCTAAGTATGTGAAGAGAAACAGAGGAGACGAGACAGGAAGTCACTTCAGTCTTCTTCAT 875
||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 849 CCTAAGTCTTTGAAGAGAAACAGAGGAGACGAGACAGGAAGTCACTTTAGTCTTGTTCAT 908
Query 876 CCTCAAGATGATTCGGAGAAAGGAGGTTTCAAGCTTATCTACGATGAGAATCAATCGAAA 935
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 909 CCTCAAGATGATTCGGAGAAAGGAGGTTTCAAGCTTATATACGATGAGAATCAATCGAAA 968
Query 936 TCAAAGAAACCAAGAACAGAGAAAGAACGAGGCGGTTCTTCAAACATTAGCTTCCAACAT 995
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 969 TCAAAGAAACCAAGAACAGAGAAAGAACGAGGCGGTTCTTCGAACATTAGTTTCCAACAT 1028
Query 996 TCAACTTGTTTGTCTGACAATGTCGAGCCTGATGCTGAGGCTATTGCGCAGATGAAGGAG 1055
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 1029 TCAACTTGTTTGTCTGACAATGTCGAGCCCGATGCTGAGGCGATTGCACAAATGAAGGAG 1088
Query 1056 ATGATATACAGAGCGGCTGCGTTTAGACCGGTGAATTTCGGGTTAGAGATTGTGGAGAAG 1115
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ATGATATACAGAGCGGCTGCATTTAGACCGGTGAATTTCGGGTTAGAGATTGTGGAGAAG 1148
Query 1116 CCTAAGAGAAAGAACGTGAAGATATCGACGGATCCTCAAACTGTTGCAGCAAGACAGAGA 1175
|||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1149 CCTAAGAGGAAGAACGTCAAGATATCGACGGATCCTCAAACGGTTGCAGCGAGACAGAGA 1208
Query 1176 AGGGAGAGGATAAGTGAGAAGATTAGGGTTTTACAAACATTAGTTCCAGGTGGGACGAAG 1235
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1209 AGGGAGAGGATAAGTGAGAAGATTAGGGTTTTACAAACATTGGTTCCAGGTGGGACGAAG 1268
Query 1236 ATGGACACAGCTTCAATGCTTGATGAAGCTGCTAATTATCTCAAGTTCCTTAGAGCACAA 1295
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 ATGGATACTGCATCAATGCTTGATGAAGCTGCTAATTATCTCAAGTTCCTTAGAGCACAA 1328
Query 1296 GTAAAGGCTTTAGAAAACTTGAGACCCAAGCTTGACCAAACCAATCTCTCTTTCTCTTCT 1355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GTAAAAGCTTTAGAAAACTTGAGACCCAAGCTTGACCAAACCAATCTCTCTTTCTCTTCT 1388
Query 1356 GCTCCT---TCGTTTCCCTTATTTCACCCATCTTTTCTTCCATTGCAAAACCCTAATCAA 1412
|||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1389 GCTCCTACATCGTTTCCATTATTCCACCCATCTTTTCTTCCATTGCAAAATCCTAATCAA 1448
Query 1413 ATCCGTCATCCAGGGTGTTGAACAGATTCTAAACTTTTGAGTTTCATCATCATCAACAGA 1472
|||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1449 ATCCATCATCCAGAGTGTTG-ACAGATTATAAACTTTTGAGTTTCATCATCATCAACAGA 1507
Query 1473 ATCATGGCGTCTTGATTGTTTTAGCAGTTCTCAAGAAAGGCAACTTCTGTGAGAAGGGTG 1532
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1508 ATCATGGCGTCTTGATTGTTTTAGCAGTTCTCAAGAAAGGCAACTTCTGTGACAAGGGTG 1567
Query 1533 GTGTCGGGCAGtgttgtttacactttccagtctttgttttgcatttctttttatataaag 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 GTGTCGGGCAGTGTTGTTTACACTTTCCAGTCTTTGTTTTGCATTTCTTTTTATATAAAG 1627
Query 1593 tttgtttttatatatataGAATCTGTGGAATTCGAGGGTTGAAtttttttttGCGAAAAA 1652
||||| ||| |||||| ||||||||||||||||||||||||| | || | | |||||
Sbjct 1628 TTTGTATTT-TATATA--GAATCTGTGGAATTCGAGGGTTGAAATATTGT--G--AAAAA 1680
Query 1653 CAGAGCCGCAAGAGGTTAATTACTGTCACTGCAACATTTTTCAACCTTTTATTACTTTAT 1712
||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||
Sbjct 1681 CAGAGCCGCAAGAGGTTAATTACAGTCTCTGCAATATTTT-CAACCTTTTATTACTTTAT 1739
Query 1713 TAGAGAAAAGAAAGCGTAAGAGAATTGCAATTATGAAGCGATGATTATCAACAAAAGTGT 1772
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TAGAGTAAAGATAGCGTAAGATAATTGCAATTATGAAGCGATGATTATCAACAAAAGTGT 1799
Query 1773 TTAG 1776
||||
Sbjct 1800 TTAG 1803
Score = 63.9 bits (34), Expect = 5e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 729 ACAACAACGATAAAGCCTAAGTCTTTGAAGAGAAACAGAGGAG 771
|||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 834 ACAACAACAACAAAACCTAAGTCTTTGAAGAGAAACAGAGGAG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87850953750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5