BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479659
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21380.1 | Symbols: | Mannose-binding lectin superfamily pr... 2370 0.0
AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 571 6e-162
> AT3G21380.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr3:7528184-7530677 FORWARD LENGTH=1662
Length=1662
Score = 2370 bits (1283), Expect = 0.0
Identities = 1541/1659 (93%), Gaps = 44/1659 (3%)
Strand=Plus/Plus
Query 1 ACCACACCAACTCTCTCATCTCTTTTTGTCAACCAAAGaaaaaaaaaCACAGAGGTACAT 60
|||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct 1 ACCACACCAACTCTCTCATCTCTTTTTGTCAA-C--A-AAAAAAAAACACAGAAGTACAT 56
Query 61 ACAATGGCGGCCGCAACGATGTCTTGGGACGACGGGAAGCACATGAAGGTGAAAAGAGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 57 ACAATGGCGGCCGCAACGATGTCTTGGGACGACGGGAAGCACATGAAGGTGAAGAGGGTG 116
Query 121 CAGATTACATATGAAGATGTTATCAACTCCATAGAGGCTGAATACGACGGAGACACTCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAGATTACATATGAAGATGTTATCAACTCCATAGAGGCTGAATACGACGGAGACACTCAT 176
Query 181 AACCCTCACCGTCACGGCACTCCTGGCAAGAAATCTGACGGCGTGAGCTTGAGCCCTGAC 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 177 AACCCTCACCATCACGGCACTCCTGGCAAGAAATCTGACGGCGTGAGCTTGAGCCCAGAC 236
Query 241 GAGTACATAACAGATGTTACTGGCTACTACAAAACTACGGGGGCTGAAGATGCTATAGCA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 GAGTACATAACAGATGTTACTGGCTACTACAAAACTACAGGGGCTGAAGATGCTATAGCA 296
Query 301 GCCTTGGCTTTTAAGACCAATAAAACCGAATATGGTCCTTACGGAAACAAAACAAGGAAC 360
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 297 GCATTGGCTTTTAAGACCAACAAAACTGAATATGGTCCTTACGGAAACAAAACAAGGAAC 356
Query 361 CAATTCTCCATTCATGCACCCAAAGATAATCAGATTGCTGGTTTTCAAGGAATTAGCAGC 420
||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||
Sbjct 357 CAATTCTCCATTCATGCTCCTAAAGATAATCAGATAGCTGGTTTCCAAGGAATTAGCAGC 416
Query 421 AATGTCCTCAACTCTATTGACGTCCACTTTGCTCCCTTACCTTCCCCCTCCTCCACGTCG 480
||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 417 AATGTTCTCAACTCTATTGACGTCCACTTTGCTCCCTTACCTT---CCTCTTCGTCGTCA 473
Query 481 TCGTCCGGTTTGAGTCAAGCCAACAAAGTTGATGCTCAAGGTGGGAAAGGAGGAACATCA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCGTCCAGTTTGAGTCAAGCCAACAAAGTTGATGCTCAAGGTGGGAAAGGAGGAACATCA 533
Query 541 TGGGACGATGGTGCTCATGATCATGTAAGAAGAGTGTACACTGGACAAGGTGATTCTGGT 600
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 534 TGGGACGATGGTGCTCATGATCATGTAAGACGAGTGTACATTGGACAAGGTGATTCTGGT 593
Query 601 GTCACTTATGTCAAGTTCGAGTACGAGAAGGACGGTAAGAAGGAATCACGCGAACACGGA 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 594 GTCACTTATGTCAAGTTCGAGTACGAGAAGGACGATAAGAAGGAATCACGCGAACACGGA 653
Query 661 AAGAAGACC-TTGCTAGGAGCAGAAGTGTTTGAGGTTGATCCAGACGACTACATCACATC 719
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AAGAAGACCCTT-CTAGGAGCAGAAGTGTTTGAGGTTGATCCAGACGACTACATCACATC 712
Query 720 AGTGGAGGTGCAATCCGACAAGATATTTGGGCAAGACACGGAAGTTATCACCTCCTTAAT 779
|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGTGGAAGTGCAATCTGACAGGATATTTGGGCAAGACACGGAAGTTATCACCTCCTTAAT 772
Query 780 CTTCAAAACATCCAA-GGGAAAAATCTCACCACCCTTTGGACTCGAGGGTTCACAAAAAT 838
||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||
Sbjct 773 CTTCAAAACATCCAAAGGGAAAT-TCTCACCGCCCTTTGGACTCGAGGGTTCACAGAAAT 831
Query 839 ATGAACTCAAGGACAAGAATGGTGGCAAACTAGTTGGGTTCCATGGACGAGTAGGCG--- 895
||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 832 ATGAACTCAAGGACAAGAATGGTGGTAAACTCGTTGGGTTCCATGGGCGAGTAGGCGGCG 891
Query 896 AACTTCTTCATGCTCTGGGAGCTTATTTCGCTCCTTCATCCGGTGGTAGTCGTACTCCTT 955
|||||||| ||||||||||||||||||||||||||||||||||| || | |||| ||||
Sbjct 892 AACTTCTTAATGCTCTGGGAGCTTATTTCGCTCCTTCATCCGGTCGT-G--GTACCCCTT 948
Query 956 CAGCCACTCAGCCAGCTGGATCAGCTCAGTCAGCCGGATCAGCTGGTGCCAAGAAACTAG 1015
|||||||||||||| ||||||||||||| || | |||||||||||||| ||||||||||
Sbjct 949 CAGCCACTCAGCCACCTGGATCAGCTCAACCAACTGGATCAGCTGGTGCTAAGAAACTAG 1008
Query 1016 AAGCAAAAGGTGGTAACGTGGGAAATCCATGGGACGATGGTCCTCATGATGGTGTGAGGA 1075
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1009 AAGCAAAAGGTGGTAACGTGGGAAATCCATGGGACGATGGTCCTCATGAAGGTGTGAGGA 1068
Query 1076 AAGTGTATATAGGTCAGGGCGATTCCGGTGTATCATACGTCAAGTTCGTCTACGACAAGG 1135
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1069 AAGTGTATATAGGTCAGGGTGATTCTGGTGTATCATACGTCAAGTTTGTCTACGACAAGG 1128
Query 1136 ACTCTAAGGAGGTCCCCGGAAATGATCATGGGAAAAGAACACTACTTGCACCTGAAGAGT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ACTCTAAGGAGGTCCCCGGAAATGATCATGGGAAAAGAACACTACTTGCACCTGAAGAGT 1188
Query 1196 TCGTGCTTGAATATCCGAACGAACATATAACATCGGTGGAGATTAACTACGACAACATAT 1255
|| | ||||||||||| |||||| ||||||||||||||||| ||||||| ||||| ||||
Sbjct 1189 TCCTTCTTGAATATCCAAACGAATATATAACATCGGTGGAGCTTAACTATGACAAAATAT 1248
Query 1256 TTGGAAATGAAGGTGAAATTATAACGATGCTTAGGTTCACTACTAACAAGCGAACCTCTC 1315
|||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1249 TTGGAACTGAAGGTGAAATCATAACGATGCTTAGGTTCACAACGAACAAGCGAACCTCTC 1308
Query 1316 CACCTTTTGGACTTGAAGGTGCCAAAAGCGTCCTACTCAAAGAAGATGGCCACAAGGTCG 1375
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1309 CACCTTTTGGACTTGAAGGTGCCAAAAGCGTCCTACTCAAAGAAGACGGCCACAAGATAG 1368
Query 1376 TTGGGTTCCATGGCAAAGCCGGTGCAGACATAATTCACCAAGTTGGAGTCCATGTCAAGC 1435
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1369 TTGGCTTCCATGGCAAAGCGGGTGCTGACATAATTCACCAAGTTGGAGTCCATGTCAAGC 1428
Query 1436 CCATTTCCAAGTGAAGTTTTTAATCTTTTCTCAAAGTCTCAGTCTAATAAATAAAAATGA 1495
| ||||||||||||||||| |||| ||||||||| ||| | |||||||||| || |||
Sbjct 1429 CTATTTCCAAGTGAAGTTTGTAATATTTTCTCAA-GTCCCGGTCTAATAAA-AA---TGA 1483
Query 1496 GCTAT-AAAAAAGCTCTGTTCTAGAAATTGTCATTGTACGTGTGTAAATGGTAAATAAGG 1554
||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1484 GCTATCAAAAAATCTCTGTTCTAGAAATTGTCATTGTACTTGTGTAAATGGTAA-TAAGG 1542
Query 1555 TCTTTCACGCACTTTGCCTAtgtgttacttgtgtgttgtttgtgtttgtgtttcaatgtc 1614
||||| || | | ||| || |||||||||| | || || |||||||||||||
Sbjct 1543 TCTTTGACA-A-TATGC-TA-------CTTGTGTGTT-T--GT-TT-GTGTTTCAATGTC 1587
Query 1615 tccttatgttgtact---t-g-agtttgtAACACTGTTT 1648
||||||| |||||| | | ||| |||||||||||||
Sbjct 1588 TCCTTATACTGTACTGGATTGGAGTCTGTAACACTGTTT 1626
> AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28370.1);
Has 13 Blast hits to 13 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19068241-19069776
FORWARD LENGTH=893
Length=893
Score = 571 bits (309), Expect = 6e-162
Identities = 381/414 (92%), Gaps = 12/414 (3%)
Strand=Plus/Plus
Query 1267 GGTGAAATTATAACGATGCTTAGGTTCACTACTAACAAGCGAACCTCTCCACCTTTTGGA 1326
||||||||| || |||||||||| ||||| || ||||| ||||||||||| |||||||||
Sbjct 479 GGTGAAATTGTAGCGATGCTTAGATTCACGACGAACAAACGAACCTCTCCGCCTTTTGGA 538
Query 1327 CTTGAAGGTGCCAAAAGCGTCCTACTCAAAGAAGATGGCCACAAGGTCGTTGGGTTCCAT 1386
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 CTTGAAAGTGCCAAAAGCGTCCTACTCAAAGAAGATGGCCACAAGGTCGTCGGGTTCCAT 598
Query 1387 GGCAAAGCCGGTGCAGACATAATTCACCAAGTTGGAGTCCATGTCAAGCCCATTTCCAAG 1446
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 GGCAAAGCGGGTGCAGACATAATTCACCAAGTTGGAGTCCATGTCAAGCCCATTTTCAAG 658
Query 1447 TGAAGTTTTTAATCTTTTCTCAAAGTCTCAGTCTAATAAATAAAAATGAGCTATAAAAAA 1506
||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 659 TGAAGTTTTTAATATTTTCTCAAAGTCTCAGTC---T-AATAAAAATGAGCTAAAAAAAA 714
Query 1507 GCTCTGTTCTAGAAATTGTCATTGTACGTGTGTAAATGGTAAATAAGGTCTTTCACGCAC 1566
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTCTGTTCTAGAAATTGTTATT-TACGTGTGTAAATGGTAAATAAGGTCTTTCACGCAC 773
Query 1567 TTTGCCTAtgtgttacttgtgtgttgtttgtgtttgtgtttcaatgtctccttatgttgt 1626
|||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||
Sbjct 774 TTTGCCTATGTGTTACTTGTGTGTTGTTGGTGTTCGTGTTTCAATGTCTCTTTATGGTGT 833
Query 1627 acttgagtttgtAACA---CTGTTTATAAGGTGtatatatatataATCTTGGTT 1677
||| |||||||||||| ||||||| | |||||| ||||| | ||| ||||||
Sbjct 834 ACTGGAGTTTGTAACAGTACTGTTTA-A-GGTGTACATATA-A-AATTTTGGTT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5