BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479663
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21420.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 2255 0.0
> AT3G21420.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:7541477-7543518
FORWARD LENGTH=1494
Length=1494
Score = 2255 bits (1221), Expect = 0.0
Identities = 1344/1402 (96%), Gaps = 14/1402 (1%)
Strand=Plus/Plus
Query 1 TAGACTCTCACTCTCTCACGACTCACAGAGCAAAGAGCTAAAGTCCAAAACCAAACACAC 60
|||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 TAGACTCTCACTCTTTTACGACTCAAAGAGCAAAGAGCTAAAGTCCAAAACCAAACACAA 63
Query 61 AAACAAAAATC-AAATTTTATTTCTTGGTCTGCTTTCAAGAATATGGCTCCTCTACCTAT 119
||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 64 AAACAAAAATCTAAA-TTTCTTTCTTGGTCTGCTTTC---AATATGGCTCCTCTACCTAT 119
Query 120 TTCTTCGATTAGAGTTGGGCAAATAGATGATGTTCAAGAACTGATAAAATCCAAACCAAA 179
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTCTTCGATTAGAGTTGGGAAAATAGATGATGTTCAAGAACTCATAAAATCCAAACCAAA 179
Query 180 CAAAGTTCCGGAGAGATTCATTAGAGAAGAGTATGAGAGAGGAGTCGTCCTGTCGTCTCT 239
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CAAAGTTCCAGAGAGATTCATTAGAGAAGAGTATGAGAGAGGAGTCGTTGTGTCGTCTCT 239
Query 240 TAAGACTCATCATCTTCATCATCAGATTCCTGTTATTGATCTCTCTAAGCTCTCTAAACC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAAGACTCATCATCTTCATCATCAGATTCCTGTTATTGATCTCTCTAAGCTCTCTAAACC 299
Query 300 CCACAATGATGATTTTTTCTTTGAGATTCTTAAGCTCTCACAAGCTTGTGAAGACTGGGG 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGACAATGATGATTTTTTCTTTGAGATTCTTAAGCTCTCACAAGCTTGTGAAGACTGGGG 359
Query 360 ATTTTTCCAGGTTATAAATCATGGGATAGACGTGGAGGTTGTGGAAGATGTAGAGAAAGT 419
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 360 ATTTTTCCAGGTTATAAATCATGGGATAGAAGTGGAGGTTGTGGAAGATATAGAGGAAGT 419
Query 420 GGC-TAAGGAGTTCTTTGATATGCCGTTGGAGGAGAAGAAGAAGTATCCAATGGAGCCAG 478
||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTTCA-GAGTTCTTTGATATGCCATTGGAGGAGAAGAAGAAGTATCCAATGGAGCCAG 478
Query 479 GGACCGTACAAGGTTATGGTCAAGCGTTT-ATCTTCTCTGAAGATCAGAAACTTGATTGG 537
| ||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||
Sbjct 479 GTACCGTACAAGGTTATGGTCAAGC-TTTCATATTCTCCGAAGATCAGAAACTTGATTGG 537
Query 538 TGCAACATGTTTGCCCTTGGTGTTCATCCTCCACAAATTCGCAACCCCAAACTATGGCCC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCAACATGTTTGCCCTTGGTGTTCATCCTCCACAAATTCGCAACCCCAAACTATGGCCC 597
Query 598 TCGAAACCGGCCAGGTTCAGTGAAAGTCTTGAAGGTTACTCAAAAGAGATAAGAGAACTA 657
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 TCTAAACCGGCCCGGTTCAGTGAAAGTCTTGAAGGTTACTCAAAAGAGATAAGGGAACTA 657
Query 658 TGCAAGAGGTTGTTGAAGTACATAGCAATAAGCTTGGGTCTAAAAGAAGAGAGGTTTGAA 717
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 658 TGCAAAAGGTTGTTGAAGTATATAGCAATAAGCTTGGGTCTAAAAGAAGAGAGATTTGAG 717
Query 718 GAAATGTTTGGGGAGGCAGTGCAAGCAGTGAGAATGAATTATTACCCTCCATGTTCAAGT 777
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GAAATGTTTGGGGAGGCAGTGCAAGCAGTGAGGATGAATTATTACCCTCCATGTTCAAGT 777
Query 778 CCTGATCTTGTCTTGGGACTTAGCCCACATTCTGATGGAAGTGCTCTCACTGTTCTTCAA 837
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CCTGATCTTGTCTTAGGACTTAGTCCACATTCTGATGGAAGTGCTCTCACTGTTCTTCAA 837
Query 838 CAGAGCAAGAACAGTTGTGTTGGCCTTCAGATCCTCAAAGACAACACTTGGGTCCCTGTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CAGAGCAAGAACAGTTGTGTTGGCCTTCAGATCCTCAAAGACAACACTTGGGTCCCTGTT 897
Query 898 AAACCTCTTCCCAATGCCCTTGTCATCAACATTGGTGATACCATTGAGGTGCTAAGTAAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAACCTCTTCCCAATGCCCTTGTCATCAACATTGGTGATACCATTGAGGTGCTAAGTAAT 957
Query 958 GGGAAGTACAAGAGTGTAGAGCATAGGGCAGTAACAAACAGGGAAAAGGAGAGGCTTACA 1017
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGGAAATACAAGAGTGTAGAGCATAGGGCAGTAACAAACAGGGAAAAGGAGAGGCTTACA 1017
Query 1018 ATAGTGACATTCTATGCACCAAACTATGAGGTTAAAATAGAACCAATGAGTGAGTTGGTT 1077
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 ATAGTGACATTCTATGCACCAAACTATGAGGTTGAAATAGAACCAATGAGTGAGTTGGTT 1077
Query 1078 GATGATGAGACCAACCCATGCAAGTATAGAAGCTACAATCATGGTGACTATAGTTATCAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGATGAGACCAACCCATGCAAGTATAGAAGCTACAATCATGGTGACTATAGTTATCAC 1137
Query 1138 TATGTCTCCAACAAGCTCCAAGGCAAGAAGTCCCTTGATTTTGCCAAGATTCTCAATTAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TATGTCTCCAACAAGCTCCAAGGCAAGAAGTCCCTTGATTTTGCCAAGATTCTCAATTAA 1197
Query 1198 ACTAATATTAGTTTCACCCCATCACC-CTCCATTAACTAGTTACCACTTA-TTTGCTTTC 1255
|||| ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1198 ACTATTATTAATTTCACCCCATCAAATCTCCATTAACTAGTTACCACTTAATTTGCTTTC 1257
Query 1256 ttttttttAAGAAAAATTATTTGTTGCAACTTTTGTGTGTATAATGTATAGGAATGTCCC 1315
||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1258 TTTAAT--AAGAAAAATTATTTGTTG-AACTTTTGTGTGTATAATGTATAGGAATGTTCC 1314
Query 1316 CCACTTAGGGTTTTTAGTGTCATGATTAAATTCCCCAATGTTAATACAACTTGTAATATT 1375
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1315 CCACCTAGGGTTTTTAATGTCATGATTAAATTCCCCAATGTGAATACAACTTGTAATATT 1374
Query 1376 TGGTATGTATGTGTGTGGGTGG 1397
| |||||||||||||| ||||
Sbjct 1375 TTATATGTATGTGTGTGTGTGG 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5