BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479665
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21460.1 | Symbols: | Glutaredoxin family protein | chr3:75... 883 0.0
> AT3G21460.1 | Symbols: | Glutaredoxin family protein | chr3:7557384-7557958
REVERSE LENGTH=575
Length=575
Score = 883 bits (478), Expect = 0.0
Identities = 525/547 (96%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 1 AAAACAAACTCATCAAAACAAAATTAAATCTCCAACCACTTCAAAGAAAAGAAATATATA 60
||||||||||||||||||||| ||||||||||||| |||||||||| ||| | | |||||
Sbjct 1 AAAACAAACTCATCAAAACAACATTAAATCTCCAATCACTTCAAAG-AAA-ATA-ATATA 57
Query 61 CATACCAAAAGAGTATTACTATACAAATGGATGTGGTAGCAAGATTAGCGTCGCAAAGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CATACCAAAAGAGTATTACTATACAAATGGATGTGGTAGCAAGATTAGCGTCGCAAAGAG 117
Query 121 CAGTGGTGATATTCAGCAAGAGTACGTGTTGCATGTCTCATGCAATTAAACGGTTGTTTT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGGTGGTGATATTCAGCAAGAGTACGTGTTGCATGTCTCATGCAATTAAACGGTTGTTTT 177
Query 181 ACGAGCAAGGTGTGAGCCCGGCGATTGTAGAGATCGACCAAGACATGTATGGGAAAGATA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 ACGAGCAAGGTGTGAGCCCGGCAATTGTAGAGATCGACCAAGACATGTATGGGAAAGATA 237
Query 241 TCGAGTGGGCCTTGGCCCGATTAGGCTGTAGCCCTACGGTTCCTGCGGTTTTTGTCGGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 TCGAGTGGGCCTTGGCCCGATTAGGCTGTAGCCCTACGGTTCCTGCGGTTTTTGTTGGAG 297
Query 301 GGAAATTCGTAGGAACGGCCAATACCGTCATGACTCTTCATCTCAATGGATCGTTGAAAA 360
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 298 GGAAATTCGTAGGAACGGCCAATACTGTCATGACTCTTCATCTCAATGGATCATTGAAAA 357
Query 361 TGTTGCTCAAGGAGGCTGGTGCTTTGTGGCTGTAGCACTCATTTGATCTTTACTTTGAGT 420
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 358 TATTGCTCAAGGAGGCTGGTGCTTTGTGGCTTTAGCACTCGTTTGATCTTTACTTTGAC- 416
Query 421 CTTTGAAAGTCTCTTCACTTTATGTACGTTTAATTAAAGCATATGTGAAGAAGAACTACT 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 CTTTGAAAGTCTCTTCACTTTATGTACGTTTAATTAAAGCATATGTGAAGAGGAACTACT 476
Query 481 TTGTATTGAGAGTTATTAAATATATGTCTATGTGGAGGTTGATTTAAGGATCAACTATAA 540
||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 477 TTGTATTGAGAGTAATTAAATAT--GTCTATGTGGAGGTTGATTTAATGATTAACTATAA 534
Query 541 CCCATTA 547
|||||||
Sbjct 535 CCCATTA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5