BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479672
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21530.1 | Symbols: | DNAse I-like superfamily protein | ch... 2484 0.0
> AT3G21530.1 | Symbols: | DNAse I-like superfamily protein |
chr3:7582740-7584583 REVERSE LENGTH=1600
Length=1600
Score = 2484 bits (1345), Expect = 0.0
Identities = 1518/1602 (95%), Gaps = 10/1602 (1%)
Strand=Plus/Plus
Query 1 ATTGATATGACATCATAGTCTTGTTGTTTGTTTGATTGTCTTATGAAAAGTTTGTATCTT 60
|||||||||| || ||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1 ATTGATATGATATTATAGTCTTGTTGTTTGTTTAATTGTCTCATGAAAAGTTCAAATCTT 60
Query 61 TGTTTGGAAAGCTCTCAAAGTGTTAATCTTTTGTAGCTGTTTCTATTTTTTGAAGCAGAA 120
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TGTTTTGAAAACTCTCAAAGTGTTAATCTTTTGTAGCTGTTTCCATTTTTTGAAGCAGAA 120
Query 121 TAACAGAGAGATTACATGTTGTGTGTGTTTAGAAGGAAGCTTGGTTGCtttttttCAAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TAACAGAGAGATTACATGTTGTGTGTGTTTAGAAGGAAGCTTGGTTGCCTTTTTTCAAGA 180
Query 181 ATTCGATGGGTGATCAAGAAACGGGTGAGAGCCAGAGTTATAGTCAGGAGGTTCAGGAAA 240
|| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 CTTAGATGGGTTATCAAGAAACGGGTGAGGGCTAGAGTTATAGTCAGGAGGTTCAGGAAA 240
Query 241 GCAAGGTGGAGAGCTCGAAGAAAAGAGAGTCCGGAATCCGAAGTTTCTTCTATCCATCTA 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GCAAGGTGGAGAGCTCGAAGAAAAGAGAGTCCGGAATCTGAAGTTTCTTCTATCCATCTG 300
Query 301 AGCTCAAACTCTAGAAGACATATTCGGGTTGCAACGTTTAACGTGGCGATGTTCTCACTT 360
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGCTCAAACTCTGGAAGACATATTCGGGTTGCAACGTTTAACGTGGCTATGTTCTCACTT 360
Query 361 GCGCCTGTTGTGCAAAACATAGAGGAAACAACTTTTCTTGGTCATATAGATAGCAACAAC 420
|||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| ||||
Sbjct 361 GCGCCTGTTGTGCAAACCATGGAGGAAACAGCTTTTCTTGGTCATCTAGATAGCAGCAAC 420
Query 421 ATCACATGCCCTTCTCCAAAAGGGATTCTGAAGCAGTCTCCTTTACATTCTTCTGCAGTC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCACATGCCCTTCTCCAAAAGGGATTCTGAAGCAGTCTCCATTACATTCTTCTGCAGTC 480
Query 481 AGGAAACCAAAGGTCTGTATTAATCTTCCAGACAATGAGATTTCCTTAGCACAGAGCTAC 540
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGGAAACCAAAGGTTTGCATTAATCTCCCAGACAATGAGATTTCCTTAGCACAGAGCTAC 540
Query 541 AGCTTTCTGAGTATGGTGGAGAATGATAACGACGGGAAGGAAAACAGAGGAAGTATCTCT 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGCTTTCTGAGTATGGTAGAGAATGATAACGACGGGAAGGAAAACAGAGGAAGTCTCTCG 600
Query 601 ATGAGATCTCCCGTGTGTCTTCCCTCTTGTTGGTGGGACCAAGAAAGCTTTAACGGATAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAGATCTCCCGTGTGTCTTCCCTCTTGTTGGTGGGACCAAGAAAGCTTTAACGGATAC 660
Query 661 AGCAGCAGAAGAAGCATAGCTGAGTTGTTAAGAGAGTTGGATGCAGACATCTTGGCTTTA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCAGCAGAAGAAGCATAGCTGAATTGTTAAGAGAGTTGGATGCAGACATCTTGGCTTTA 720
Query 721 CAAGACGTGAAAGCAGAGGAAGAGACTCTTATGAAGCCATTATCAGATTTGGCTTCTGCC 780
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 721 CAAGACGTGAAAGCAGAGGAAGAGACACTTATGAAACCATTATCAGATTTGGCTTCCGCC 780
Query 781 TTAGGTATGAAATATGTTTTTGCAGAGAGCTGGGCGCCGGAGTATGGCAACGCCATTCTG 840
|||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 781 TTAGGTATGAAATACGTGTTTGCAGAGAGCTGGGCGCCTGAGTATGGAAACGCCATACTA 840
Query 841 TCAAAATGGCCCATAAAGAAGTGGAGAGTTCAGAGAATTGCTGATGTAGATGACTTTAGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TCAAAATGGCCCATAAAGAAGTGGAGAGTTCAGAGAATTGCTGATGTAGATGATTTTAGG 900
Query 901 AATGTGTTGAAGGTGACTGTAGAGGTCCCATGGGCTGGAGATGTTAATGTGTATTGTACT 960
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 901 AATGTGTTGAAGGTGACTGTAGAGATCCCATGGGCTGGAGATGTAAATGTGTATTGTACT 960
Query 961 CAACTTGACCATCTAGATGAGAACTGGCGGATGAAGCAAATCGATGCAATAACTCGAGGA 1020
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 961 CAACTTGACCATCTAGATGAGAACTGGCGTATGAAGCAGATCGATGCAATTACTCGAGGA 1020
Query 1021 GATGAATCTCCTCACATCTTGCTGGGAGGCTTGAATTCTCTTGATGGCTCTGATTATTCC 1080
|| |||||||| |||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GACGAATCTCCCCACATCCTCCTTGGAGGCTTGAATTCTCTTGATGGCTCTGATTATTCC 1080
Query 1081 ATAGCAAGATGGAACCACATATTAAAGGTAAAGTATTACGAGGATTCTGGAAAACCGACA 1140
|||||||||||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct 1081 ATAGCAAGATGGAACCAC--A-T---CGTAAAGTATTACGAGGATTCTGGAAAGCCGACG 1134
Query 1141 CCTAGAGTTGAAGTGATGAGATTTCTCAAGGGAAAAGGATACTTGGATTCAAAAGAATTT 1200
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CCTAGAGTTGAAGTGATGAGGTTTCTCAAGGGAAAAGGATACTTGGATTCAAAAGAATTT 1194
Query 1201 GCAGGAGAATGTGAGCCTGTTGTCATTATTGCCAAAGGACAAAATGTACAAGGAACATGC 1260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GCAGGAGAATGTGAGCCTGTAGTCATTATTGCCAAAGGACAAAATGTACAAGGAACATGC 1254
Query 1261 AAGTACGGGACACGGGTCGATTACATTCTGGCATCTCCAGAGTCACCTTACGAATTCGTT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1255 AAGTACGGGACACGGGTCGATTACATTCTGGCATCTCCAGAGTCACCTTACGAATTTGTT 1314
Query 1321 CCAGGCTCATATTCAGTTGTTTCTTCCAAAGGTACTTCTGATCATCATATAGTCAAAGTC 1380
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCTGGCTCGTACTCAGTTGTTTCTTCCAAAGGTACTTCTGATCATCATATAGTCAAAGTC 1374
Query 1381 GATTTAGTTATAACCAAAGAGCGATCTCGAGGTAGCTTCAAACATTCGCGCAAGAAGGCA 1440
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct 1375 GATTTAGTTATAACCAAAGAGCGATCTCGAGGTAACTTCAAACATTCACGCAAGAAAGCA 1434
Query 1441 AAGCAGAAGATCTTTCAGATTAAAGCTAATTTGATGTCAGGA-GATACATGGAAACTAGG 1499
|||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||
Sbjct 1435 AAGCAGAAGATCTTTCAGATAAAAGCTAATTTGATGTC-GAAAGATACATGGAAACTAGG 1493
Query 1500 AAATCTTATGTCTTCATAATGTTTGGCCACTAATTAAGGAACAACACTTGT-TCATATGA 1558
|||||| |||||||||||| |||||| |||| |||||| |||||||||||| | ||||||
Sbjct 1494 AAATCTGATGTCTTCATAAAGTTTGGACACTGATTAAGAAACAACACTTGTGT-ATATGA 1552
Query 1559 TAACGTTTATTCCAATCATATTAAGATACAATACAACATTTA 1600
||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1553 TAACGTTTATTCCCATCATATTAAGATGCAATACAACATTTA 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5