BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479675
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21560.1 | Symbols: UGT84A2 | UDP-Glycosyltransferase superf... 2551 0.0
> AT3G21560.1 | Symbols: UGT84A2 | UDP-Glycosyltransferase superfamily
protein | chr3:7595806-7597577 FORWARD LENGTH=1772
Length=1772
Score = 2551 bits (1381), Expect = 0.0
Identities = 1613/1724 (94%), Gaps = 20/1724 (1%)
Strand=Plus/Plus
Query 1 CAAAACAAAAACAGAGCATACAAAAAGAGAAACCAAGTTTT-TTGAAGAATGGAACTAGA 59
|||||||||||||||||| |||||||||||||||||||||| || || |||||| |||||
Sbjct 31 CAAAACAAAAACAGAGCACACAAAAAGAGAAACCAAGTTTTCTT-AAAAATGGAGCTAGA 89
Query 60 ATCTTCTCCTCCTCTACCTCCTCTACCTCCTCATGTGATGCTTGTATCATTCCCAGGGCA 119
| | || ||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 90 A-----T-CT--TCT-CCTCCTCTACCTCCTCATGTGATGCTCGTATCTTTTCCAGGGCA 140
Query 120 AGGCCACGTTAATCCACTTCTTCGTCTCGGCAAGCTCTTAGCTTCAAAGGGTTTACTCAT 179
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 141 AGGCCACGTTAATCCACTTCTTCGTCTTGGTAAGCTCTTAGCTTCAAAGGGTTTGCTCAT 200
Query 180 AACCTTCGTCACCACAGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AACCTTCGTCACCACTGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 260
Query 240 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTACGATTTTTTCGACGACGGGCT 299
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 261 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTATGATTTCTTCGACGACGGGCT 320
Query 300 TCCTGAAGACGACGAAGCTAGCAGAACCGACTTAACCATCCTCCGACCACAACTCGAGCT 359
|||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 321 TCCTGAAGACGACGAAGCTAGCAGAACCAACTTAACCATCCTCCGACCACATCTAGAGCT 380
Query 360 GGTCGGTAAAAGAGAGATCAAGAACCTTGTGAAACGTTACGCGGAAGTGACGAAACAGCC 419
|||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 381 GGTCGGCAAAAGAGAGATCAAGAACCTTGTGAAACGTTACAAGGAAGTAACGAAACAGCC 440
Query 420 AGTAACATGTCTCATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCTGAAGATCT 479
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 441 CGTGACATGTCTTATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCAGAAGATCT 500
Query 480 TCAAATCCCTTGTGCTGTTCTCTGGGTTCAGTCTTGTGCCTGCTTAGCTGCTTATTACTA 539
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 501 TCAAATCCCTTGTGCTGTTCTTTGGGTTCAATCTTGTGCCTGCTTAGCTGCTTATTACTA 560
Query 540 TTACCACCACAACCTAGTTGACTTCCCGAGCAAAACAGAACCCGAGATCGATGTCCAAAT 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 561 TTACCACCACAACCTAGTTGACTTCCCGACCAAAACAGAACCCGAGATCGATGTCCAAAT 620
Query 600 CCCTGGCATGCCTCTCTTGAAACCCGACGAGACCCCTTCTTTCATTCACCCTTCAAGTCC 659
| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 621 CTCTGGCATGCCTCTCTTGAAACATGACGAGATCCCTTCTTTCATTCACCCTTCAAGTCC 680
Query 660 TTATTCCGCTTTGCGAGAAGTGATCATAGATCAGATCAAACGGCTTCACAAGACTTTCTC 719
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 681 TCACTCCGCTTTGCGAGAAGTGATCATAGATCAGATTAAACGGCTTCACAAGACTTTCTC 740
Query 720 TATTTTCATCGACACTTTCAACTCCTTGGAGAAAGAAATCATCGACCACATGTCAACTCT 779
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct 741 CATTTTCATCGACACTTTCAACTCATTGGAGAAAGACATCATTGACCACATGTCGACGCT 800
Query 780 CTCTCTCCCCGGCGTTATCAGACCGCTCGGACCGCTTTACAAAATGGCTAAAACCGTAGC 839
|||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 801 CTCTCTCCCCGGTGTTATCAGACCGCTAGGACCACTCTACAAAATGGCTAAAACCGTAGC 860
Query 840 TTATGATGACGGCAAAGGAAACATCTCTGAGCCAACGGATCCTTGCATGGAATGGTTAGA 899
|||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 861 TTATGATGTCGTTAAAGTAAACATCTCTGAGCCAACGGATCCTTGCATGGAGTGGTTAGA 920
Query 900 CTCGCAGCCTGTTTCCTCCGTTGTATACATCTCATTCGGGACCGTTGCTTACTTGAAACA 959
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 921 CTCGCAGCCAGTTTCCTCCGTTGTTTACATCTCATTCGGGACCGTTGCTTACTTGAAACA 980
Query 960 AGAACAGATAGATGAGATCGCGTACGGTGTGTTAAACGCGGACGTTACGTTCTTATGGGT 1019
|||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 981 AGAACAAATAGACGAGATCGCTTACGGTGTGTTAAACGCCGACGTTACGTTCTTGTGGGT 1040
Query 1020 GATTAGACAACAAGAGTTAGGTTTCAACAAAGA-ACGACATGTTTTGCCGGAAGAAGTAA 1078
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1041 GATTAGACAACAAGAGTTAGGTTTCAACAAAGAGA-AACATGTTTTGCCGGAAGAAGTTA 1099
Query 1079 AATGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTTTTGTCTCATCCTTCGG 1138
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1100 AAGGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTATTATCTCATCCTTCAG 1159
Query 1139 TGGCATGTTTCGTGACTCATTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGGCATGTTTCGTGACTCACTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1219
Query 1199 TCCCGACGGTTTGTTTCCCTCAGTGGGGAGATCAAGTCACGGACGCAGTTTACATGATCG 1258
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1220 TCCCGACGGTTTGTTTTCCTCAATGGGGAGATCAAGTCACGGACGCCGTTTACATGATCG 1279
Query 1259 ATGTTTGGAAGACGGGAGTGAGGCTTGGCCGTGGAGAGGCGGATGAGAGGTTGGTGCCGA 1318
||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 1280 ATGTTTGGAAGACGGGAGTGAGGCTAAGCCGTGGAGAGGCGGAGGAGAGGTTAGTGCCGA 1339
Query 1319 GGGAGGAAGTGGCGGAGAGGCTGAGAGAGGTTACTAAAGGAGAGAAAGCAATCGAGCTGA 1378
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 1340 GGGAGGAAGTTGCGGAGAGGTTGAGAGAGGTTACTAAAGGAGAGAAAGCGATCGAGTTGA 1399
Query 1379 AGAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGATCGT 1438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1400 AAAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGTTCGT 1459
Query 1439 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1519
Query 1499 AAAACGGGAGTCATAATCATGTTTTGGCTGGATCAATCAAAAGCTTTTAAAAATTCATCA 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1520 AAAACGGGAGTCATAATCATGTCTTGGCTGGATCAATCAAAAGCTTTTAAAAAGTCATTT 1579
Query 1559 AAGttttttggttttttGTCTTTGGTTTCTGCGAATCCTTAATTGTGTTTGTATGCATTC 1618
||||||||| |||||||| ||||||||||||| ||| | ||||||||||||||| ||| |
Sbjct 1580 AAGTTTTTTTGTTTTTTGCCTTTGGTTTCTGCAAATTCGTAATTGTGTTTGTATCCATCC 1639
Query 1619 TCCCATTGCGTTCTTTGTTTCTGTGTTTACTTTCttttttttttGGTATGGGTCTAGGGG 1678
|||||||| ||||||||||| | |||||||| | |||||||| ||||||||||||||||
Sbjct 1640 TCCCATTGTGTTCTTTGTTTTTCTGTTTACTAT-TTTTTTTT--GGTATGGGTCTAGGGG 1696
Query 1679 AGAGTCAAT-ATCCTT-CTTGAAGAATGTCAGTCAAGCATTAAA 1720
||||||||| | |||| || ||||||||||||||| ||||||||
Sbjct 1697 AGAGTCAATGA-CCTTACT-GAAGAATGTCAGTCACGCATTAAA 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85039723230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5