BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479684
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | chitin elicitor recep... 2782 0.0
> AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor
kinase 1 | chr3:7615385-7618581 REVERSE LENGTH=2063
Length=2063
Score = 2782 bits (1506), Expect = 0.0
Identities = 1769/1893 (93%), Gaps = 29/1893 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCT-AA-A-ttctctaatcgctccgcttcttcttcttctcttctcatcgtcgttt 57
|||||||| || | |||||||||||||||| ||||||||||||||||| |
Sbjct 52 ATGAAGCTAAAGATTTCTCTAATCGCTCCG---ATTCTTCTTCTCTTCTCA--------T 100
Query 58 ctcttcttcGCCGTCGAATCTAAGTGCAGGAAC-AGCTG-CGATTTAGCTCTAGCTTCTT 115
||||||||||||| ||||||||||||||| || ||||| | ||||||||||||||| |
Sbjct 101 -TCTTCTTCGCCGTGGAATCTAAGTGCAGG-ACTAGCTGTC-CTTTAGCTCTAGCTTCGT 157
Query 116 ACTA-CGTCGCTAACGGAACAACTCTCTCCGCCATCAACCAAAACCTCAATTCTTCAATC 174
|||| | ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 158 ACTATC-TCGAGAACGGAACAACACTCTCCGTCATCAACCAAAACCTCAATTCTTCAATC 216
Query 175 GCGCCTTACGATCAAGTCAATTTCGATCCAATCCTTAGGTACAACCCG-AACATTAGAGA 233
||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||| |||
Sbjct 217 GCGCCTTACGATCAAATCAATTTCGATCCAATCCTCAGGTACAA-CAGTAACATTAAAGA 275
Query 234 CAAAGATAGAATCCAGATGGGTTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAGCC 293
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 276 CAAAGATAGAATCCAGATGGGCTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAACC 335
Query 294 TGGTGATTTTCTAGGGCACAATTTCAGCTACAGTGTTCGACAAGAAGATACTTATGAAAG 353
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 336 TGGTGATTTCCTAGGGCACAATTTCAGCTACAGTGTTCGACAGGAAGATACTTACGAAAG 395
Query 354 AGTGGCGATCAGGAATTACGCGAATTTAACGACGGTGGAATCCTTGCAGGCGAGGAATCC 413
||| ||||| || |||||||||||| | |||||| |||| || || ||||||||||||||
Sbjct 396 AGTCGCGATTAGTAATTACGCGAATCTCACGACGATGGAGTCGTTACAGGCGAGGAATCC 455
Query 414 TTTTCCGGCGACTAATATCCCGCTCTCTGCGACGCTTAATGTGTTGGTGAATTGTTCTTG 473
||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||
Sbjct 456 TTTTCCGGCGACTAACATACCTCTCTCTGCGACGCTTAATGTATTGGTGAATTGTTCTTG 515
Query 474 TGGTGATGAGAGTGTTTCTAAGGATTTTGGTTTGTTTGTTACTTATCCGCTTCGTCCTGA 533
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 516 TGGTGATGAGAGTGTTTCGAAAGATTTTGGTTTGTTTGTTACGTATCCGCTTCGTCCTGA 575
Query 534 GGATAGTCTCAGTTCGATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGGTA 593
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 AGACAGTCTCAGTTCTATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGATA 635
Query 594 TAATCCTGATGTTAATTTTAACTCAGGGAATGGAATCGTTTATGTCCCGGGAAAAGATCC 653
|||||| | ||||||||||||||| |||||||||||||||||||| || |||| ||||||
Sbjct 636 TAATCCCGGTGTTAATTTTAACTCCGGGAATGGAATCGTTTATGTGCCTGGAAGAGATCC 695
Query 654 AAGTGGTGCATTTCCAGCTTTCAAATCAAGTAAACAAGGTGGTATTGGTGCTGGAGTTAT 713
|| ||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 696 AAATGGTGCATTTCCACCATTCAAATCAAGTAAACAAGATGGTGTTGGTGCTGGAGTTAT 755
Query 714 TGCTGGTATAGTTGTAGGAGTGATTGTGGCTTTGTTGTTAATCTTGTTTATCATATATTA 773
||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 756 TGCTGGTATAGTTATAGGAGTGATTGTGGCTTTGTTGTTGATCTTGTTTATCGTATATTA 815
Query 774 TGCTTACCGGAAGAGCAAGTCGAAGGGTGATTCGTATTCATCTTCTATTCCGTTGTCTAC 833
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 816 TGCTTACCGGAAGAATAAGTCGAAGGGTGATTCGTTTTCTTCTTCTATTCCGTTGTCTAC 875
Query 834 TAAGGCTGATCTTGCTTCTTCTACCAGCCTCCAAAGTGGAGGCTTGGGTGGTACCGGAGT 893
||||||||||| |||||||||||| || |||||||||||||| ||||||||| |||||||
Sbjct 876 TAAGGCTGATCATGCTTCTTCTACTAGTCTCCAAAGTGGAGGTTTGGGTGGTGCCGGAGT 935
Query 894 ATCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTACGTTGGAGGAGCT 953
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 936 GTCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTTCGTTGGAGGAACT 995
Query 954 CGCAAAGGCTACTGATAATTTCAATCTGTCTTTTAAGATTGGTCAAGGTGGTTTTGGGGC 1013
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 996 AGCAAAGGCTACTGATAATTTCAATTTGTCTTTTAAGATTGGGCAAGGTGGTTTTGGGGC 1055
Query 1014 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATCAAGAAGATGGACATGGAGGC 1073
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1056 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATTAAGAAGATGGACATGGAGGC 1115
Query 1074 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1175
Query 1134 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1235
Query 1194 TGGCAACCTTGGACAACATTTACATGGGTCAGGACAAGAACCACTACCGTGGACTAAGAG 1253
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1236 TGGTAACCTTGGACAACATTTACATGGGTCAGGACGAGAACCATTACCGTGGACTAAGAG 1295
Query 1254 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1355
Query 1314 TGTCTATGTCCACAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAATTTTCGAGC 1373
|| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1356 AGTTTATGTCCATAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAAATTCCGAGC 1415
Query 1374 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGCTCAGCAACTCGTGG 1433
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1416 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGTTCAGCAACTCGGGG 1475
Query 1434 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTATCTGCAAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1476 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTGTCTGCAAA 1535
Query 1494 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGCGCGGT 1553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1536 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGTGCGGT 1595
Query 1554 TGTCAAAATGACGGAAGCCGTTGGTGAATTTAGAGGCCTCGTTGGTGTGTTCGAAGAAGC 1613
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1596 TGTCAAAATGACAGAAGCCGTTGGTGAATTTAGAGGCCTTGTTGGTGTGTTCGAAGAATC 1655
Query 1614 ATTCAAGGAGACCGACAAAGAAGAAGCACTACGTAAGATTATAGACCCGAGGCTTGGGGA 1673
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1656 ATTCAAGGAAACCGACAAAGAAGAAGCACTACGCAAGATTATAGACCCGAGGCTCGGTGA 1715
Query 1674 TAGCTACCCGTTTGATTCGGTATATAAGATGGCGGAATTAGGGAAAGCTTGTACACAAGA 1733
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1716 TAGTTACCCGTTTGATTCGGTATACAAGATGGCGGAATTAGGGAAAGCATGTACACAAGA 1775
Query 1734 GAATGCTCAACTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCT-TTTCT 1792
|||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1776 GAATGCGCAGCTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCTCTTT-T 1834
Query 1793 CGTCAACCGGAAATTGGGATGTTGCAAACTTCCAAAACGATGATTTAGTCAGTCTTATGT 1852
|||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1835 CGTCTACCGGAAATTGGGATGTTGGAAACTTCCAAAACGAAGATTTAGTCAGTCTTATGT 1894
Query 1853 CTGGCCGGTAGA---GTTT-CCGGTTTGCTGtt 1881
| |||||||||| |||| |||||||||||||
Sbjct 1895 CCGGCCGGTAGACTCGTTTTCCGGTTTGCTGTT 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96535648035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5