BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479690
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21690.1 | Symbols: | MATE efflux family protein | chr3:763... 2832 0.0
> AT3G21690.1 | Symbols: | MATE efflux family protein | chr3:7638663-7642205
FORWARD LENGTH=1952
Length=1952
Score = 2832 bits (1533), Expect = 0.0
Identities = 1723/1812 (95%), Gaps = 24/1812 (1%)
Strand=Plus/Plus
Query 1 ACATCCTCAAGCGATAACACcaac-aacaaaacaacaaacaaaaaaaaaaaaaaCagaga 59
||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||
Sbjct 1 ACATCCTCAAGCGATAACACC-ACAAACAAAACAACAAACCAAAAAAAAAAAAA-AGAGA 58
Query 60 gagagagagagCAAA--T-C-TC--CATCATGGACTCGTCTCAAAACGACGGCGTATACC 113
||||||||||||||| | | || ||||||||||||||||| ||||||||||||| |||
Sbjct 59 GAGAGAGAGAGCAAATCTCCATCATCATCATGGACTCGTCTCCAAACGACGGCGTACACC 118
Query 114 AACCGCTTCTCCATCCTCAACCATCTCCACCTACGACGGAATCAAGCAACGGCGAGCTAG 173
||||||||||||||||||||||||||||| || || |||| |||| ||||||||||||||
Sbjct 119 AACCGCTTCTCCATCCTCAACCATCTCCATCTCCGCCGGAGTCAACCAACGGCGAGCTAG 178
Query 174 AAACCGTCCTCTCCGACGTCGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACAATAA 233
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 AAACTGTCCTCTCCGACGTAGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACCATAA 238
Query 234 TCGAATCAAAACTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 293
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCGAATCAAAGCTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 298
Query 294 ATCTCATGTCCATGTCCACTCAAATCTTCTCCGGCCATCTCGGTAACCTAGAACTCGCCG 353
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 ACCTCATGTCCATGTCTACTCAAATCTTCTCCGGCCATCTCGGTAACCTCGAACTCGCCG 358
Query 354 CCGCTTCTCTTGGTAACACCGGTATCCAAGTCTTCGCTTATGGTCTCATGCTAGGCATGG 413
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 359 CCGCTTCTCTTGGTAACACCGGTATTCAAGTCTTCGCTTACGGTCTCATGCTAGGCATGG 418
Query 414 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCATACGGTGGTCGAAAATACGACATGCTTG 473
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 419 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCGTACGGTGGTAGAAAATACGAGATGCTTG 478
Query 474 GAGTTTATCTCCAAAGATCAACCGTATTACTAACTCTCACCGGCCTCCTCCTTACCTTAA 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 479 GAGTTTATCTCCAAAGATCAACCGTATTACTAACACTCACCGGCCTCCTCCTTACTTTAA 538
Query 534 TCTACGTTTTCTCCGAACCATTCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCCG 593
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TCTACGTTTTCTCCGAACCAATCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCGG 598
Query 594 CTGCATCGCTCTTCGTATACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 653
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCGCATCGCTCTTCGTCTACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 658
Query 654 CTATCCAAAAATTCCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 713
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAATACAAAAATTTCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 718
Query 714 CTACACTCTTTGTCCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 773
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTACGCTCTTTGTTCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 778
Query 774 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATTGTTGTGGCTCAGTTTG 833
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 779 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATAGTCGTGGCTCAGTTTG 838
Query 834 TTTATATTGTTACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 893
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTATATTGTGACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 898
Query 894 TCTCGGGTTTATGGAGTTTCTTTAAACTCTCTGCTGCCTCCGCCGTGATGCTTTGCCTTG 953
|||||||||| |||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 899 TCTCGGGTTTGTGGAGTTTCTTTAAACTCTCCGCCGCTTCTGCCGTGATGCTTTGCCTTG 958
Query 954 AGACTTGGTATTTTCAGATTCTCGTTCTTCTCGCCGGACTTCTCGAGAATCCTGAACTTG 1013
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 AGACTTGGTATTTTCAGATTCTCGTTCTTCTTGCCGGACTTCTCGAGAATCCTGAACTTG 1018
Query 1014 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1078
Query 1074 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1138
Query 1134 CAGCAGCGTTTTCTGTAATCATCGTTAATATTTATTCGTTAATCACTTGTGTGATCCTAG 1193
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 CAGCAGCTTTTTCTGTGATCATCGTTAACATTTATTCGTTAATCACTTGTGTGATCCTAG 1198
Query 1194 CCATTGTTATTTTGGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1253
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCATTGTTATTTTAGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1258
Query 1254 TCTCCGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCTGTAACGCTTGTCCTTAACGGAA 1313
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1259 TCTCGGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCCGTAACACTTGTCCTTAACGGAA 1318
Query 1314 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAAG 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAGG 1378
Query 1374 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGAGCTCTCTTTGGGTTTTACT 1433
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGGGCTCTCTTTGGGTTTTACT 1438
Query 1434 TCAACTTTGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1493
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTAACTTCGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1498
Query 1494 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1558
Query 1554 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGATCATGCAAGT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1559 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGAT---GCAGGT 1615
Query 1614 CGATGGAAGTTTGGTATCCAATGAACCGATTAGATTTTCATCGGCTAA-CCGATGCAAAA 1672
|||| ||||||||||||||| |||||||||||||| |||||| ||| ||||||||||
Sbjct 1616 TGATGAAAGTTTGGTATCCAAGGAACCGATTAGATT--CATCGG-TAAACCGATGCAAAT 1672
Query 1673 GCTCATATTA----GTGAGCTGGTAATAAAGGATATGGATCTACCTTTTAAACTTCTACA 1728
||||| | || |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1673 GCTCAAAGTAACATGTGAGCTGGTAAAAAAGGATATGGATCAACCTTTTAAACTTCTACA 1732
Query 1729 ACTCGATTTTAAGCTTTTTGTGTTCTTGTTTTAAA-GATTACACAGGTAGGTTATGTATA 1787
|||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||
Sbjct 1733 ACTCAATTTTAAGTTTTTTGTGTTCTTGTTTAAAATG-TTAGA--GGTAGGTTATGTATT 1789
Query 1788 TTTGTATGCCAA 1799
||||||||||||
Sbjct 1790 TTTGTATGCCAA 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91816796805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5