BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479691
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21700.3 | Symbols: SGP2 | Ras-related small GTP-binding fam... 1801 0.0
> AT3G21700.3 | Symbols: SGP2 | Ras-related small GTP-binding family
protein | chr3:7644350-7646355 FORWARD LENGTH=1275
Length=1275
Score = 1801 bits (975), Expect = 0.0
Identities = 1192/1285 (93%), Gaps = 62/1285 (5%)
Strand=Plus/Plus
Query 1 aaaaaa-aGGAAGAAACACAGAAAAGCTAAAGCTTC-GGCATTATGTATTG--ATCAAAT 56
|||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 12 AAAAAAGAGGAAGAAACACAGAAAAGCTAAAGCTTCGGGCATTATGTATTGAAATCAAAT 71
Query 57 CTCTCTCTCTTTTTCTTCCATGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCAtctc 116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 72 CTCTCTCTCTTTTTCTTCCGTGGCCAAAATGGATCCAAGCAGCTTCTCTTTGGCCA---- 127
Query 117 ttcttcttcttgaagctgc-ttcttcctccaa------tttttccagattatcctctcc- 168
|| ||||||||||||||| ||||||||| || |||||||||| | || |||||
Sbjct 128 -TC-TCTTCTTGAAGCTGCTTTCTTCCTCAAATTCTTTTTTTTCCAGA-T-TCTTCTCCT 183
Query 169 ttcttcttccttcttccttatttcgatttcG-ATTTTGAAAATTTAT-TAAATGGCTCAA 226
||||||||||||||||||||||||||||||| |||||| ||||| | | ||||||||||
Sbjct 184 TTCTTCTTCCTTCTTCCTTATTTCGATTTCGAATTTTG--AATTT-TCTCAATGGCTCAA 240
Query 227 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTGTCTTAAAATTGTTCGAATCAACAATCTAAGGAACAGAGTGAATCGTCGGATTTTG 300
Query 287 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCTCCGACGATTCACACGGTTGTTATGGAGTAGAATCGTTGCTTGTACTCCTGGCAAA 360
Query 347 TCTCGGAGATATCTCTTGCTTTCTCGCGCTGTTCCGTCTCCGACTGTTTCTCGTCCTTCT 406
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TCTCGGAGATATCTCTTGCTTTCTCGCGCTCTTCCGTCTCCGACTGTTTCTCGTCCTTCT 420
Query 407 CCTCCTCCTCCAATCCCCGCCGTGGATGTCGAT-GTCG-TCGTCGTCGGTGGTGGTGGTG 464
||| || ||| ||||||||||| ||||||| | |||| | || || |||||||||||||
Sbjct 421 CCT--TC-TCCGATCCCCGCCGTCGATGTCG-TCGTCGGTGGTGGT-GGTGGTGGTGGTG 475
Query 465 AGTTCGTTCGTCGTTCATCGGTTGTCTACGATAACGATAACAGTCATCGGAGATCGGATT 524
|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 476 AGTTTGTTCGTCGTTCGTCGGTTGTTTACGATAATGATAACAGTCATCGGAGATCGGATT 535
Query 525 CTGATTTGGTTTCTTTGAAGATCAGCCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 584
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 536 CTGATTTGGTTTCTTTGAAGATTAGTCTCTTAGGAGATCCAGAAATCGGAAAAACTAGCT 595
Query 585 TCCTGGCGAAATATGTTGGAGAAGGGAAAGAAGTGGAAATGAGAGAATTGGAGAAAGGGA 644
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 596 TCCTGGCGAAATATGTTGGAGAAGAGAAAGAAGTAGAAATGAGAGAATTGGAGAAAGGTA 655
Query 645 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TAAATTGTACGGACAAGACGTTATACATGGGAGGTGCTCGCATTTCATATAGTATCTGGG 715
Query 705 ACTTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTATGGCTTGCAAGGACTCTGTTG 764
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 AATTAGAAGGAGCTGAGAGATCACGAGATCAAATCCCTGTGGCTTGCAAGGACTCTGTTG 775
Query 765 CTATTCTCTTTATGTTTGATCTTA-CCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 823
| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 776 CCATTCTCTTTATGTTTGAT-TTAACCAGTCGTTGCACGCTTAATAGTGTCATTAGCTGG 834
Query 824 TATCAACAAGCTAGGAAGTCTAATCAGACGGCAATACCAGTTATGGTAGGAACCAAGTTT 883
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 TATCAACAAGCTAGGAAGTCTAATCAGACGGCGATACCAGTTATGGTAGGAACCAAGTTT 894
Query 884 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGGCGAGAACA 954
Query 944 TATGCGAAGGCTTTAAACGCGACACTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1003
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 TATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTG 1014
Query 1004 AATAAGATCTTCAAGTTTGTGACGGCGAAGCTCTTCGACTTACCTTGGACGGTAGAGCGC 1063
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1015 AATAAGATCTTTAAGTTTGTGACGGCGAAGCTCTTCGACTTACCATGGACGGTGGAGCGC 1074
Query 1064 AATCTCACAATTGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AATCTCACAATCGGAGAACCAATCATCGACTTCTAGAATATGTATTTGTATATAATATAA 1134
Query 1124 AAGAAGCGAATT-T------TG--tttttttC----------AATTCACCGCCAAAGCTT 1164
||||||||||| | || ||||||| |||||||||| |||||||
Sbjct 1135 AAGAAGCGAATCCTGAAGAATGCGTTTTTTTTTTTTTTTTTTAATTCACCGCTAAAGCTT 1194
Query 1165 GTCGCCGTGGGACTGATCGGACCACAGTTTCTAGTCGTATTTAAGCGAAATGGAGAGATG 1224
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 1195 GTCGCCGTGGGACTGATCGGAC-----T----AGTCGAATTTAAGCGAAATGGAGAGATG 1245
Query 1225 AAGCGGCGGAGATTTCGCCCGCTTT 1249
|||||||||||||||||||||||||
Sbjct 1246 AAGCGGCGGAGATTTCGCCCGCTTT 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5